Wall clock time and date at job start Mon Mar 30 2020 03:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38262 * 119.99919 * 2 1 4 4 C 1.38210 * 119.99838 * 180.02562 * 3 2 1 5 5 C 1.38249 * 120.00034 * 359.94995 * 4 3 2 6 6 C 1.50701 * 119.99949 * 180.02562 * 5 4 3 7 7 C 1.50703 * 112.84755 * 114.82409 * 6 5 4 8 8 H 1.08002 * 119.99721 * 114.78291 * 7 6 5 9 9 C 1.37874 * 120.00225 * 294.77993 * 7 6 5 10 10 N 1.31520 * 119.99903 * 355.17629 * 9 7 6 11 11 Si 1.86801 * 120.00366 * 175.16818 * 9 7 6 12 12 H 1.48500 * 109.47318 * 270.00778 * 11 9 7 13 13 H 1.48502 * 109.46652 * 30.00179 * 11 9 7 14 14 H 1.48496 * 109.47257 * 150.00055 * 11 9 7 15 15 C 1.53781 * 113.61835 * 246.01954 * 6 5 4 16 16 C 1.54044 * 86.98730 * 140.01826 * 15 6 5 17 17 C 1.53776 * 87.07918 * 334.57213 * 16 15 6 18 18 C 1.38217 * 120.00453 * 0.28009 * 5 4 3 19 19 C 1.38211 * 119.99831 * 180.02562 * 2 1 3 20 20 C 1.50692 * 120.00252 * 0.02562 * 19 2 1 21 21 H 1.09002 * 109.46780 * 90.00264 * 1 2 3 22 22 H 1.08997 * 109.46703 * 210.00071 * 1 2 3 23 23 H 1.08993 * 109.47098 * 329.99966 * 1 2 3 24 24 H 1.07997 * 119.99821 * 0.02562 * 3 2 1 25 25 H 1.08002 * 119.99910 * 179.97438 * 4 3 2 26 26 H 0.96999 * 119.99643 * 355.08812 * 10 9 7 27 27 H 1.09000 * 113.61883 * 254.61714 * 15 6 5 28 28 H 1.09004 * 113.61099 * 25.51385 * 15 6 5 29 29 H 1.08997 * 113.62300 * 220.01895 * 16 15 6 30 30 H 1.09007 * 113.68689 * 89.12547 * 16 15 6 31 31 H 1.09003 * 113.61386 * 270.87864 * 17 16 15 32 32 H 1.08997 * 113.69580 * 139.98452 * 17 16 15 33 33 H 1.07997 * 120.00239 * 179.72166 * 18 5 4 34 34 H 1.08997 * 109.47475 * 89.99510 * 20 19 2 35 35 H 1.09003 * 109.47114 * 209.99799 * 20 19 2 36 36 H 1.09001 * 109.46962 * 329.99379 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 0.0000 6 6 5.7787 0.0001 0.0000 7 6 6.3638 -0.5824 1.2607 8 1 6.9348 -1.4982 1.2180 9 6 6.1703 0.0537 2.4685 10 7 5.5573 1.2166 2.5085 11 14 6.7786 -0.7362 4.0483 12 1 5.7102 -1.5988 4.6137 13 1 7.9791 -1.5610 3.7588 14 1 7.1301 0.3229 5.0279 15 6 6.3948 -0.5731 -1.2872 16 6 7.4423 0.5521 -1.1901 17 6 6.3948 1.3518 -0.3978 18 6 3.5807 -1.1969 -0.0048 19 6 2.1981 -1.1970 -0.0005 20 6 1.4446 -2.5020 -0.0017 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3632 -0.8900 0.5138 23 1 -0.3633 0.8899 0.5138 24 1 1.6583 2.1326 0.0004 25 1 4.1204 2.1327 -0.0010 26 1 5.3049 1.6603 1.6837 27 1 6.8125 -1.5723 -1.1640 28 1 5.7438 -0.4897 -2.1575 29 1 7.6955 0.9974 -2.1522 30 1 8.3211 0.2830 -0.6039 31 1 5.7438 1.9605 -1.0253 32 1 6.8111 1.9062 0.4433 33 1 4.1207 -2.1322 -0.0090 34 1 1.2633 -2.8160 -1.0296 35 1 2.0335 -3.2620 0.5118 36 1 0.4921 -2.3720 0.5120 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261040187.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:47 Heat of formation + Delta-G solvation = 23.647984 kcal Electronic energy + Delta-G solvation = -16301.796686 eV Core-core repulsion = 13943.531712 eV Total energy + Delta-G solvation = -2358.264974 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.38002 -37.43120 -32.61440 -32.03656 -31.39273 -27.48522 -26.23293 -25.26455 -24.25955 -22.60597 -21.04247 -19.79356 -18.44477 -16.41591 -15.53527 -14.92077 -14.26122 -13.80346 -13.75005 -13.69394 -13.04251 -12.59350 -12.48248 -12.32870 -12.07334 -11.83737 -11.52617 -11.29934 -10.91729 -10.79126 -10.56218 -10.32070 -10.20082 -10.04261 -10.01801 -9.32920 -9.02078 -8.65109 -8.26083 -7.86645 -7.40169 -6.26311 -4.05544 2.24779 2.30681 3.44799 3.46806 3.62147 4.53457 4.63945 5.34613 5.39804 5.45917 5.58207 5.66431 5.77990 5.83858 5.85386 5.91876 5.95106 6.02988 6.16027 6.20093 6.24518 6.35991 6.47917 6.50364 6.59782 6.60874 6.80869 6.96830 7.01140 7.12650 7.24634 7.32272 7.39101 7.60695 7.81299 7.96757 8.28923 8.44035 8.91211 9.67630 11.08461 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.021909 B = 0.010458 C = 0.008864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.727246 B = 2676.634609 C = 3157.918060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.121 4.121 3 C -0.121 4.121 4 C -0.121 4.121 5 C -0.020 4.020 6 C 0.082 3.918 7 C -0.575 4.575 8 H 0.053 0.947 9 C 0.029 3.971 10 N -0.904 5.904 11 Si 1.063 2.937 12 H -0.288 1.288 13 H -0.289 1.289 14 H -0.285 1.285 15 C -0.130 4.130 16 C -0.126 4.126 17 C -0.146 4.146 18 C -0.107 4.107 19 C -0.098 4.098 20 C -0.109 4.109 21 H 0.058 0.942 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.107 0.893 25 H 0.113 0.887 26 H 0.281 0.719 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.042 0.958 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.112 0.888 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.608 -2.598 -5.608 8.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.121 4.121 3 C -0.139 4.139 4 C -0.139 4.139 5 C -0.020 4.020 6 C 0.082 3.918 7 C -0.612 4.612 8 H 0.071 0.929 9 C -0.177 4.177 10 N -0.539 5.539 11 Si 0.892 3.108 12 H -0.215 1.215 13 H -0.215 1.215 14 H -0.211 1.211 15 C -0.167 4.167 16 C -0.163 4.163 17 C -0.184 4.184 18 C -0.125 4.125 19 C -0.098 4.098 20 C -0.166 4.166 21 H 0.077 0.923 22 H 0.081 0.919 23 H 0.075 0.925 24 H 0.125 0.875 25 H 0.131 0.869 26 H 0.094 0.906 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.130 0.870 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.582 -2.406 -3.953 7.251 hybrid contribution -0.017 -0.091 -1.513 1.516 sum -5.599 -2.498 -5.466 8.213 Atomic orbital electron populations 1.20713 0.92530 1.01866 1.01115 1.19435 0.94893 0.92933 1.04839 1.20813 0.94398 0.96521 1.02208 1.20998 0.93401 0.98180 1.01324 1.20455 0.97716 0.91801 0.92040 1.18524 0.86579 0.92991 0.93724 1.21477 1.36876 1.11271 0.91599 0.92874 1.25658 0.94690 0.95750 1.01632 1.70683 1.35836 1.14550 1.32833 0.83638 0.76092 0.75482 0.75625 1.21486 1.21508 1.21118 1.22950 0.98007 0.97745 0.98003 1.22587 0.97444 0.98073 0.98191 1.23145 0.98122 0.98212 0.98929 1.20714 0.92336 0.98233 1.01191 1.19602 0.93919 0.94117 1.02178 1.20756 0.99666 0.94876 1.01255 0.92328 0.91935 0.92486 0.87538 0.86906 0.90646 0.92685 0.92568 0.93925 0.90574 0.92853 0.91495 0.86955 0.92148 0.92091 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 9.60 36.01 0.35 -1.17 16 2 C -0.12 -2.26 5.88 -104.62 -0.62 -2.87 16 3 C -0.12 -2.41 9.70 -39.58 -0.38 -2.79 16 4 C -0.12 -2.70 7.89 -39.59 -0.31 -3.01 16 5 C -0.02 -0.46 4.32 -104.63 -0.45 -0.91 16 6 C 0.08 1.98 0.45 -156.00 -0.07 1.91 16 7 C -0.57 -15.52 7.89 -34.44 -0.27 -15.80 16 8 H 0.05 1.45 7.81 -52.49 -0.41 1.04 16 9 C 0.03 0.82 5.23 -17.82 -0.09 0.72 16 10 N -0.90 -26.43 13.11 55.43 0.73 -25.71 16 11 Si 1.06 25.11 29.91 -169.99 -5.08 20.03 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 15 C -0.13 -2.75 7.12 -25.78 -0.18 -2.93 16 16 C -0.13 -2.57 7.81 -25.78 -0.20 -2.77 16 17 C -0.15 -3.33 5.31 -25.92 -0.14 -3.46 16 18 C -0.11 -2.34 9.12 -39.58 -0.36 -2.71 16 19 C -0.10 -1.90 5.88 -104.63 -0.62 -2.51 16 20 C -0.11 -1.65 9.60 36.00 0.35 -1.30 16 21 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 22 H 0.06 0.82 5.95 -51.93 -0.31 0.51 16 23 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 24 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 25 H 0.11 2.51 5.91 -52.49 -0.31 2.20 16 26 H 0.28 7.95 3.82 -40.82 -0.16 7.80 16 27 H 0.05 1.15 8.09 -51.93 -0.42 0.73 16 28 H 0.06 1.11 8.09 -51.93 -0.42 0.69 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.60 8.14 -51.92 -0.42 1.18 16 31 H 0.05 1.13 6.76 -51.93 -0.35 0.78 16 32 H 0.07 1.68 6.94 -51.93 -0.36 1.31 16 33 H 0.11 2.43 8.06 -52.49 -0.42 2.00 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.90 8.09 -51.93 -0.42 0.48 16 36 H 0.06 0.84 5.95 -51.93 -0.31 0.53 16 LS Contribution 284.30 15.07 4.28 4.28 Total: -1.00 -29.38 284.30 -8.30 -37.68 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.22 Total: 3.33 kcal Atomic # 6 Polarization: -36.60 SS G_CDS: -3.01 Total: -39.61 kcal Atomic # 7 Polarization: -26.43 SS G_CDS: 0.73 Total: -25.71 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.08 Total: 20.03 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.38 -8.30 -37.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261040187.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.327 kcal (2) G-P(sol) polarization free energy of solvation -29.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds