Wall clock time and date at job start Mon Mar 30 2020 03:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38262 * 119.99919 * 2 1 4 4 C 1.38210 * 119.99838 * 180.02562 * 3 2 1 5 5 C 1.38249 * 120.00034 * 359.94995 * 4 3 2 6 6 C 1.50701 * 119.99949 * 180.02562 * 5 4 3 7 7 C 1.50703 * 112.84755 * 114.82409 * 6 5 4 8 8 H 1.08002 * 119.99721 * 114.78291 * 7 6 5 9 9 C 1.37874 * 120.00225 * 294.77993 * 7 6 5 10 10 N 1.31520 * 119.99903 * 355.17629 * 9 7 6 11 11 Si 1.86801 * 120.00366 * 175.16818 * 9 7 6 12 12 H 1.48500 * 109.47318 * 270.00778 * 11 9 7 13 13 H 1.48502 * 109.46652 * 30.00179 * 11 9 7 14 14 H 1.48496 * 109.47257 * 150.00055 * 11 9 7 15 15 C 1.53781 * 113.61835 * 246.01954 * 6 5 4 16 16 C 1.54044 * 86.98730 * 140.01826 * 15 6 5 17 17 C 1.53776 * 87.07918 * 334.57213 * 16 15 6 18 18 C 1.38217 * 120.00453 * 0.28009 * 5 4 3 19 19 C 1.38211 * 119.99831 * 180.02562 * 2 1 3 20 20 C 1.50692 * 120.00252 * 0.02562 * 19 2 1 21 21 H 1.09002 * 109.46780 * 90.00264 * 1 2 3 22 22 H 1.08997 * 109.46703 * 210.00071 * 1 2 3 23 23 H 1.08993 * 109.47098 * 329.99966 * 1 2 3 24 24 H 1.07997 * 119.99821 * 0.02562 * 3 2 1 25 25 H 1.08002 * 119.99910 * 179.97438 * 4 3 2 26 26 H 0.96999 * 119.99643 * 355.08812 * 10 9 7 27 27 H 1.09000 * 113.61883 * 254.61714 * 15 6 5 28 28 H 1.09004 * 113.61099 * 25.51385 * 15 6 5 29 29 H 1.08997 * 113.62300 * 220.01895 * 16 15 6 30 30 H 1.09007 * 113.68689 * 89.12547 * 16 15 6 31 31 H 1.09003 * 113.61386 * 270.87864 * 17 16 15 32 32 H 1.08997 * 113.69580 * 139.98452 * 17 16 15 33 33 H 1.07997 * 120.00239 * 179.72166 * 18 5 4 34 34 H 1.08997 * 109.47475 * 89.99510 * 20 19 2 35 35 H 1.09003 * 109.47114 * 209.99799 * 20 19 2 36 36 H 1.09001 * 109.46962 * 329.99379 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 0.0000 6 6 5.7787 0.0001 0.0000 7 6 6.3638 -0.5824 1.2607 8 1 6.9348 -1.4982 1.2180 9 6 6.1703 0.0537 2.4685 10 7 5.5573 1.2166 2.5085 11 14 6.7786 -0.7362 4.0483 12 1 5.7102 -1.5988 4.6137 13 1 7.9791 -1.5610 3.7588 14 1 7.1301 0.3229 5.0279 15 6 6.3948 -0.5731 -1.2872 16 6 7.4423 0.5521 -1.1901 17 6 6.3948 1.3518 -0.3978 18 6 3.5807 -1.1969 -0.0048 19 6 2.1981 -1.1970 -0.0005 20 6 1.4446 -2.5020 -0.0017 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3632 -0.8900 0.5138 23 1 -0.3633 0.8899 0.5138 24 1 1.6583 2.1326 0.0004 25 1 4.1204 2.1327 -0.0010 26 1 5.3049 1.6603 1.6837 27 1 6.8125 -1.5723 -1.1640 28 1 5.7438 -0.4897 -2.1575 29 1 7.6955 0.9974 -2.1522 30 1 8.3211 0.2830 -0.6039 31 1 5.7438 1.9605 -1.0253 32 1 6.8111 1.9062 0.4433 33 1 4.1207 -2.1322 -0.0090 34 1 1.2633 -2.8160 -1.0296 35 1 2.0335 -3.2620 0.5118 36 1 0.4921 -2.3720 0.5120 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261040187.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:47 Heat of formation + Delta-G solvation = 9.975784 kcal Electronic energy + Delta-G solvation = -16302.389557 eV Core-core repulsion = 13943.531712 eV Total energy + Delta-G solvation = -2358.857845 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.04140 -39.06400 -34.39490 -33.77950 -32.85783 -28.99579 -27.71462 -27.09961 -26.01913 -24.31238 -22.61924 -21.37524 -20.34875 -18.28471 -17.17665 -16.40085 -15.90095 -15.62461 -15.48331 -15.03620 -14.63841 -14.49956 -13.90593 -13.68231 -13.53775 -13.36882 -13.03874 -12.68737 -12.65021 -12.48194 -12.10858 -12.04724 -11.94580 -11.81678 -11.68861 -11.06662 -10.81466 -10.56485 -10.28388 -9.44902 -9.04065 -8.39157 -6.20733 0.65589 0.72495 1.51459 1.58800 1.75324 2.59344 3.02960 3.28505 3.97339 4.04779 4.06663 4.11568 4.16617 4.29599 4.34798 4.45752 4.56166 4.68728 4.76725 4.84547 4.86552 4.92663 4.94434 5.02354 5.07796 5.10414 5.13732 5.32209 5.38007 5.44770 5.55311 5.69443 5.85633 5.88470 6.09491 6.24862 6.34076 6.42543 6.80681 7.59049 8.94972 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.021909 B = 0.010458 C = 0.008864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.727246 B = 2676.634609 C = 3157.918060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.122 4.122 3 C -0.128 4.128 4 C -0.143 4.143 5 C -0.045 4.045 6 C 0.063 3.937 7 C -0.580 4.580 8 H 0.042 0.958 9 C -0.017 4.017 10 N -0.935 5.935 11 Si 1.101 2.899 12 H -0.282 1.282 13 H -0.272 1.272 14 H -0.287 1.287 15 C -0.121 4.121 16 C -0.115 4.115 17 C -0.143 4.143 18 C -0.131 4.131 19 C -0.101 4.101 20 C -0.106 4.106 21 H 0.080 0.920 22 H 0.078 0.922 23 H 0.067 0.933 24 H 0.130 0.870 25 H 0.100 0.900 26 H 0.277 0.723 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.034 0.966 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.315 -3.479 -6.290 10.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.122 4.122 3 C -0.146 4.146 4 C -0.161 4.161 5 C -0.045 4.045 6 C 0.063 3.937 7 C -0.618 4.618 8 H 0.060 0.940 9 C -0.218 4.218 10 N -0.572 5.572 11 Si 0.926 3.074 12 H -0.208 1.208 13 H -0.197 1.197 14 H -0.213 1.213 15 C -0.158 4.158 16 C -0.152 4.152 17 C -0.181 4.181 18 C -0.149 4.149 19 C -0.101 4.101 20 C -0.162 4.162 21 H 0.099 0.901 22 H 0.097 0.903 23 H 0.086 0.914 24 H 0.148 0.852 25 H 0.118 0.882 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.123 0.877 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.284 -3.298 -4.655 9.252 hybrid contribution 0.455 0.181 -1.355 1.441 sum -6.828 -3.117 -6.010 9.615 Atomic orbital electron populations 1.20784 0.88931 1.03249 1.02914 1.19979 0.97497 0.92014 1.02688 1.21160 0.93601 0.98403 1.01441 1.21019 0.94738 0.97372 1.02989 1.20423 0.97277 0.92838 0.93985 1.18602 0.87605 0.93782 0.93739 1.21734 1.36335 1.10564 0.93150 0.94016 1.26778 0.94628 0.95754 1.04610 1.70740 1.37889 1.15653 1.32869 0.83133 0.76454 0.75026 0.72831 1.20803 1.19749 1.21274 1.22884 0.98027 0.97705 0.97223 1.22526 0.96367 0.97148 0.99147 1.23055 0.98977 0.97727 0.98383 1.20834 0.93908 0.97401 1.02744 1.20084 0.93162 0.96488 1.00378 1.20824 0.99966 0.92495 1.02964 0.90145 0.90312 0.91421 0.85199 0.88158 0.91071 0.92883 0.91126 0.90675 0.91530 0.91735 0.94672 0.87742 0.89974 0.92186 0.89737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.51 9.60 71.24 0.68 -1.83 16 2 C -0.12 -4.25 5.88 -19.86 -0.12 -4.37 16 3 C -0.13 -4.95 9.70 22.27 0.22 -4.74 16 4 C -0.14 -6.47 7.89 22.27 0.18 -6.30 16 5 C -0.04 -2.13 4.32 -19.87 -0.09 -2.22 16 6 C 0.06 3.10 0.45 -53.15 -0.02 3.07 16 7 C -0.58 -32.08 7.89 25.60 0.20 -31.88 16 8 H 0.04 2.33 7.81 -2.91 -0.02 2.30 16 9 C -0.02 -0.94 5.23 84.65 0.44 -0.50 16 10 N -0.93 -56.21 13.11 21.45 0.28 -55.93 16 11 Si 1.10 51.25 29.91 68.60 2.05 53.30 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 14 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 15 C -0.12 -5.10 7.12 31.21 0.22 -4.88 16 16 C -0.11 -4.64 7.81 31.21 0.24 -4.40 16 17 C -0.14 -6.67 5.31 31.12 0.17 -6.51 16 18 C -0.13 -5.75 9.12 22.27 0.20 -5.55 16 19 C -0.10 -3.73 5.88 -19.87 -0.12 -3.84 16 20 C -0.11 -2.88 9.60 71.23 0.68 -2.20 16 21 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 22 H 0.08 1.69 5.95 -2.39 -0.01 1.68 16 23 H 0.07 1.53 8.08 -2.39 -0.02 1.52 16 24 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 25 H 0.10 4.64 5.91 -2.91 -0.02 4.62 16 26 H 0.28 16.31 3.82 -92.71 -0.35 15.96 16 27 H 0.05 2.21 8.09 -2.39 -0.02 2.19 16 28 H 0.07 2.74 8.09 -2.39 -0.02 2.72 16 29 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.07 2.80 8.14 -2.38 -0.02 2.78 16 31 H 0.06 2.79 6.76 -2.39 -0.02 2.78 16 32 H 0.03 1.82 6.94 -2.39 -0.02 1.81 16 33 H 0.10 4.60 8.06 -2.91 -0.02 4.57 16 34 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.06 1.64 8.09 -2.39 -0.02 1.62 16 36 H 0.08 1.92 5.95 -2.39 -0.01 1.91 16 Total: -1.00 -64.37 284.30 6.69 -57.68 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 1.46 Total: 21.06 kcal Atomic # 6 Polarization: -79.02 SS G_CDS: 2.90 Total: -76.12 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: 0.28 Total: -55.93 kcal Atomic # 14 Polarization: 51.25 SS G_CDS: 2.05 Total: 53.30 kcal Total: -64.37 6.69 -57.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261040187.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.657 kcal (2) G-P(sol) polarization free energy of solvation -64.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds