Wall clock time and date at job start Mon Mar 30 2020 03:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99763 * 2 1 4 4 H 1.48498 * 109.47076 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47115 * 299.99790 * 3 2 1 6 6 H 1.48498 * 109.47287 * 59.99675 * 3 2 1 7 7 C 1.37872 * 120.00383 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00480 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99794 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.46933 * 299.99128 * 9 7 2 11 11 C 1.52999 * 109.47354 * 179.97438 * 9 7 2 12 12 C 1.50704 * 109.47199 * 63.85537 * 11 9 7 13 13 C 1.38234 * 119.99602 * 84.60081 * 12 11 9 14 14 C 1.38240 * 119.99939 * 180.02562 * 13 12 11 15 15 C 1.38238 * 119.99325 * 359.95315 * 14 13 12 16 16 C 1.38229 * 120.00613 * 0.27524 * 15 14 13 17 17 C 1.38230 * 119.99838 * 264.62074 * 12 11 9 18 18 C 1.52998 * 109.47716 * 59.99418 * 9 7 2 19 19 C 1.53789 * 113.61610 * 270.66545 * 18 9 7 20 20 C 1.53955 * 87.01660 * 220.04438 * 19 18 9 21 21 C 1.53777 * 113.61928 * 173.05429 * 18 9 7 22 22 H 0.97008 * 120.00370 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.46970 * 303.85468 * 11 9 7 24 24 H 1.08999 * 109.47253 * 183.85795 * 11 9 7 25 25 H 1.08001 * 120.00582 * 359.97438 * 13 12 11 26 26 H 1.07998 * 120.00536 * 179.97438 * 14 13 12 27 27 H 1.08008 * 119.99743 * 180.02562 * 15 14 13 28 28 H 1.08006 * 120.00298 * 179.72338 * 16 15 14 29 29 H 1.07994 * 120.00409 * 0.02562 * 17 12 11 30 30 H 1.09000 * 112.84710 * 41.85726 * 18 9 7 31 31 H 1.09006 * 113.60687 * 334.56158 * 19 18 9 32 32 H 1.08996 * 113.61477 * 105.46059 * 19 18 9 33 33 H 1.09003 * 113.53227 * 270.80336 * 20 19 18 34 34 H 1.09001 * 113.73619 * 139.94259 * 20 19 18 35 35 H 1.08995 * 113.61656 * 254.53028 * 21 18 9 36 36 H 1.09001 * 113.61464 * 25.43273 * 21 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6242 -2.5567 0.8904 11 6 2.2453 -3.6620 0.0005 12 6 3.0476 -3.6370 1.2760 13 6 2.5459 -4.2293 2.4198 14 6 3.2816 -4.2060 3.5900 15 6 4.5194 -3.5911 3.6159 16 6 5.0190 -2.9947 2.4733 17 6 4.2850 -3.0214 1.3022 18 6 0.3718 -2.5805 -1.2489 19 6 -1.0339 -1.9884 -1.0527 20 6 -1.5606 -3.1708 -1.8862 21 6 -0.3119 -3.9455 -1.4332 22 1 -0.4851 0.8401 -0.0004 23 1 2.9166 -3.5661 -0.8529 24 1 1.7021 -4.6045 -0.0686 25 1 1.5788 -4.7097 2.3995 26 1 2.8895 -4.6684 4.4837 27 1 5.0944 -3.5732 4.5300 28 1 5.9842 -2.5104 2.4948 29 1 4.6767 -2.5580 0.4088 30 1 0.8761 -2.2201 -2.1455 31 1 -1.3717 -1.9999 -0.0163 32 1 -1.1704 -1.0194 -1.5326 33 1 -1.5860 -2.9710 -2.9574 34 1 -2.4944 -3.5901 -1.5116 35 1 0.1335 -4.5543 -2.2201 36 1 -0.4520 -4.4931 -0.5012 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261042000.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:13 Heat of formation + Delta-G solvation = 20.796439 kcal Electronic energy + Delta-G solvation = -16054.730412 eV Core-core repulsion = 13696.341786 eV Total energy + Delta-G solvation = -2358.388626 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.28087 -39.27523 -35.32921 -33.79150 -31.61286 -30.54965 -26.99560 -26.03652 -25.69416 -23.29510 -22.56105 -21.19912 -19.83413 -18.44942 -17.40932 -16.52681 -16.00160 -15.83098 -15.72830 -15.24628 -14.45292 -14.27231 -14.04496 -13.68240 -13.29223 -13.01492 -12.90860 -12.74902 -12.58201 -12.38737 -12.06334 -11.79041 -11.65764 -11.61210 -11.32549 -11.04794 -10.48730 -10.27798 -10.11233 -9.63672 -9.25526 -7.90721 -6.03220 0.66833 0.70041 1.37956 1.42223 1.50361 2.48405 3.07987 3.31121 4.10575 4.15526 4.19972 4.25002 4.28060 4.34605 4.42036 4.59820 4.66769 4.83397 4.91994 4.96714 5.04025 5.11086 5.14049 5.26649 5.29824 5.34338 5.41283 5.58217 5.71453 5.74632 5.81699 5.91543 5.92820 6.00562 6.05425 6.19403 6.33833 6.54736 7.03505 7.59773 9.06116 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.018563 B = 0.011020 C = 0.007623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.045545 B = 2540.252894 C = 3672.425479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.017 3.983 3 Si 0.932 3.068 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.289 1.289 7 C -0.515 4.515 8 H 0.052 0.948 9 C 0.067 3.933 10 H -0.006 1.006 11 C -0.067 4.067 12 C -0.062 4.062 13 C -0.141 4.141 14 C -0.125 4.125 15 C -0.141 4.141 16 C -0.130 4.130 17 C -0.129 4.129 18 C -0.083 4.083 19 C -0.065 4.065 20 C -0.154 4.154 21 C -0.132 4.132 22 H 0.252 0.748 23 H 0.053 0.947 24 H 0.065 0.935 25 H 0.120 0.880 26 H 0.141 0.859 27 H 0.144 0.856 28 H 0.135 0.865 29 H 0.109 0.891 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.039 0.961 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.969 -7.941 2.436 9.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.181 4.181 3 Si 0.760 3.240 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.215 1.215 7 C -0.554 4.554 8 H 0.070 0.930 9 C 0.048 3.952 10 H 0.012 0.988 11 C -0.104 4.104 12 C -0.062 4.062 13 C -0.159 4.159 14 C -0.143 4.143 15 C -0.159 4.159 16 C -0.148 4.148 17 C -0.147 4.147 18 C -0.102 4.102 19 C -0.103 4.103 20 C -0.192 4.192 21 C -0.169 4.169 22 H 0.062 0.938 23 H 0.072 0.928 24 H 0.084 0.916 25 H 0.138 0.862 26 H 0.159 0.841 27 H 0.162 0.838 28 H 0.153 0.847 29 H 0.127 0.873 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.830 -7.810 2.436 9.033 hybrid contribution 0.254 1.475 -0.094 1.499 sum 4.084 -6.336 2.342 7.893 Atomic orbital electron populations 1.70287 1.06199 1.25584 1.51491 1.25546 0.95625 1.01154 0.95815 0.85904 0.79394 0.81683 0.77020 1.19669 1.21165 1.21549 1.21530 0.92916 0.91744 1.49196 0.92995 1.18570 0.92037 0.91804 0.92754 0.98759 1.20653 0.97284 0.98897 0.93570 1.20074 0.94294 0.95520 0.96338 1.21188 1.00082 1.01387 0.93266 1.21370 0.95147 0.99916 0.97893 1.21345 0.96633 0.99236 0.98708 1.21368 1.00503 0.99905 0.93022 1.21150 0.95262 0.99484 0.98844 1.22301 0.95671 0.94489 0.97764 1.22311 0.95596 0.94929 0.97489 1.23131 0.97374 0.98884 0.99807 1.22916 0.97117 0.96436 1.00417 0.93804 0.92835 0.91649 0.86226 0.84081 0.83801 0.84722 0.87256 0.93524 0.93495 0.94183 0.90797 0.91747 0.91575 0.90947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.16 8.90 21.44 0.19 -49.97 16 2 C 0.02 0.96 5.30 84.65 0.45 1.41 16 3 Si 0.93 44.22 29.54 68.60 2.03 46.25 16 4 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 5 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 6 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 7 C -0.52 -27.66 7.96 25.60 0.20 -27.46 16 8 H 0.05 2.78 6.03 -2.91 -0.02 2.76 16 9 C 0.07 3.22 1.77 -11.54 -0.02 3.20 16 10 H -0.01 -0.31 7.81 -2.38 -0.02 -0.33 16 11 C -0.07 -2.71 4.59 29.85 0.14 -2.58 16 12 C -0.06 -2.44 4.72 -19.87 -0.09 -2.54 16 13 C -0.14 -5.00 9.72 22.27 0.22 -4.78 16 14 C -0.13 -3.78 10.05 22.27 0.22 -3.56 16 15 C -0.14 -4.08 10.05 22.27 0.22 -3.85 16 16 C -0.13 -4.15 10.05 22.27 0.22 -3.93 16 17 C -0.13 -4.87 8.51 22.27 0.19 -4.68 16 18 C -0.08 -3.77 2.94 -10.27 -0.03 -3.80 16 19 C -0.07 -2.99 5.17 31.18 0.16 -2.83 16 20 C -0.15 -5.57 8.09 31.18 0.25 -5.32 16 21 C -0.13 -4.78 6.46 31.12 0.20 -4.58 16 22 H 0.25 13.73 8.31 -92.70 -0.77 12.96 16 23 H 0.05 2.16 8.05 -2.39 -0.02 2.14 16 24 H 0.06 2.38 6.87 -2.39 -0.02 2.37 16 25 H 0.12 3.95 8.06 -2.91 -0.02 3.93 16 26 H 0.14 3.33 8.06 -2.91 -0.02 3.30 16 27 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 28 H 0.13 3.55 8.06 -2.91 -0.02 3.52 16 29 H 0.11 4.16 7.50 -2.91 -0.02 4.14 16 30 H 0.05 2.24 8.11 -2.39 -0.02 2.23 16 31 H 0.05 2.35 7.59 -2.38 -0.02 2.33 16 32 H 0.04 2.00 7.04 -2.39 -0.02 1.98 16 33 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.06 2.08 8.14 -2.39 -0.02 2.07 16 35 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.07 2.55 7.76 -2.39 -0.02 2.54 16 Total: -1.00 -58.63 286.87 5.59 -53.04 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 1.03 Total: 15.97 kcal Atomic # 6 Polarization: -67.63 SS G_CDS: 2.34 Total: -65.29 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: 0.19 Total: -49.97 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -58.63 5.59 -53.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261042000.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.841 kcal (2) G-P(sol) polarization free energy of solvation -58.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds