Wall clock time and date at job start Mon Mar 30 2020 02:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.46992 * 2 1 4 4 N 1.30750 * 125.41604 * 89.97906 * 3 2 1 5 5 C 1.33493 * 109.90165 * 179.97438 * 4 3 2 6 6 C 1.50704 * 126.14699 * 179.97438 * 5 4 3 7 7 C 1.38107 * 107.70603 * 0.02562 * 5 4 3 8 8 C 1.41257 * 132.66549 * 179.97438 * 7 5 4 9 9 C 1.35420 * 119.80483 * 179.97438 * 8 7 5 10 10 C 1.46687 * 118.98846 * 0.02562 * 9 8 7 11 11 C 1.41206 * 120.38057 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00527 * 203.27062 * 11 10 9 13 13 C 1.39539 * 119.99713 * 23.26417 * 11 10 9 14 14 N 1.31080 * 120.00257 * 17.57256 * 13 11 10 15 15 Si 1.86809 * 120.00193 * 197.56594 * 13 11 10 16 16 H 1.48500 * 109.46743 * 60.00083 * 15 13 11 17 17 H 1.48491 * 109.47303 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47235 * 300.00724 * 15 13 11 19 19 C 1.39245 * 119.24747 * 359.97438 * 10 9 8 20 20 N 1.36158 * 120.16218 * 0.02562 * 19 10 9 21 21 H 1.08996 * 109.46920 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47120 * 299.99849 * 1 2 3 23 23 H 1.09003 * 109.47228 * 59.99761 * 1 2 3 24 24 H 1.09003 * 109.46923 * 240.00709 * 2 1 3 25 25 H 1.08997 * 109.47147 * 120.00678 * 2 1 3 26 26 H 1.08994 * 109.47242 * 90.02787 * 6 5 4 27 27 H 1.09003 * 109.46785 * 210.03180 * 6 5 4 28 28 H 1.08996 * 109.46825 * 330.02836 * 6 5 4 29 29 H 1.08002 * 120.09419 * 359.97438 * 8 7 5 30 30 H 1.08005 * 120.50650 * 179.97438 * 9 8 7 31 31 H 0.97008 * 120.00216 * 179.97438 * 14 13 11 32 32 H 1.08003 * 119.92439 * 180.02562 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2845 2.1353 1.0656 5 6 2.7139 3.3479 0.7085 6 6 3.1072 4.4626 1.6433 7 6 2.7318 3.3976 -0.6716 8 6 3.0901 4.4106 -1.5885 9 6 3.0073 4.1739 -2.9192 10 6 2.5432 2.8610 -3.3803 11 6 2.4451 2.5828 -4.7612 12 1 1.7791 1.8073 -5.1099 13 6 3.2087 3.3098 -5.6753 14 7 4.2486 3.9932 -5.2636 15 14 2.7489 3.3089 -7.4859 16 1 1.3778 3.8557 -7.6486 17 1 3.7109 4.1508 -8.2414 18 1 2.7925 1.9191 -8.0071 19 6 2.2004 1.8922 -2.4408 20 7 2.2961 2.1653 -1.1103 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5137 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 4.1709 4.3888 1.8694 27 1 2.9019 5.4229 1.1703 28 1 2.5332 4.3821 2.5664 29 1 3.4292 5.3710 -1.2291 30 1 3.2781 4.9405 -3.6303 31 1 4.7797 4.4983 -5.8992 32 1 1.8578 0.9216 -2.7681 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261045237.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:20 Heat of formation + Delta-G solvation = 50.458693 kcal Electronic energy + Delta-G solvation = -15517.495581 eV Core-core repulsion = 13056.852863 eV Total energy + Delta-G solvation = -2460.642718 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.33610 -36.25234 -33.70854 -33.62953 -31.64010 -29.80525 -29.14265 -25.94546 -24.94120 -22.95472 -21.67350 -20.17733 -19.42479 -17.44159 -15.80655 -15.51074 -15.25414 -14.72814 -14.03999 -13.90900 -13.40613 -13.00304 -12.55563 -12.41125 -12.13964 -11.80213 -11.73632 -11.46193 -11.34393 -11.15598 -10.98907 -10.65976 -10.48299 -10.23907 -9.89769 -9.44931 -9.22728 -9.08580 -7.87065 -7.13355 -6.22503 -4.64335 2.27103 2.54573 2.91225 2.92879 3.00055 3.69100 3.96991 4.06265 4.27481 5.14308 5.18381 5.53106 5.71786 5.78797 5.83881 5.91178 6.14912 6.18446 6.19095 6.29490 6.31016 6.42511 6.46969 6.58633 6.60339 6.74321 6.85925 7.21067 7.42857 7.49192 7.77523 7.87572 8.05043 8.33773 8.50315 8.75942 9.08234 9.85413 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.031009 B = 0.007885 C = 0.006479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.754992 B = 3550.370080 C = 4320.808358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.017 4.017 3 C 0.097 3.903 4 N -0.468 5.468 5 C -0.045 4.045 6 C -0.046 4.046 7 C -0.010 4.010 8 C -0.120 4.120 9 C -0.082 4.082 10 C 0.107 3.893 11 C -0.443 4.443 12 H 0.086 0.914 13 C 0.075 3.925 14 N -0.790 5.790 15 Si 0.918 3.082 16 H -0.261 1.261 17 H -0.275 1.275 18 H -0.262 1.262 19 C -0.179 4.179 20 N -0.295 5.295 21 H 0.054 0.946 22 H 0.056 0.944 23 H 0.052 0.948 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.119 0.881 30 H 0.137 0.863 31 H 0.287 0.713 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.356 -0.480 1.722 2.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.057 4.057 3 C -0.154 4.154 4 N -0.185 5.185 5 C -0.183 4.183 6 C -0.104 4.104 7 C -0.126 4.126 8 C -0.140 4.140 9 C -0.104 4.104 10 C 0.103 3.897 11 C -0.473 4.473 12 H 0.104 0.896 13 C -0.144 4.144 14 N -0.414 5.414 15 Si 0.742 3.258 16 H -0.185 1.185 17 H -0.200 1.200 18 H -0.187 1.187 19 C -0.301 4.301 20 N 0.041 4.959 21 H 0.073 0.927 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.086 0.914 25 H 0.098 0.902 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.137 0.863 30 H 0.155 0.845 31 H 0.098 0.902 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.311 -0.808 2.396 3.426 hybrid contribution 0.069 0.293 -1.801 1.826 sum -2.242 -0.515 0.594 2.376 Atomic orbital electron populations 1.21729 0.95311 1.00894 1.02195 1.19577 0.95327 0.88333 1.02429 1.22575 1.15518 0.97147 0.80174 1.69445 1.16932 1.03781 1.28352 1.20473 1.12879 0.95038 0.89889 1.19738 0.99982 0.93905 0.96758 1.19093 1.11214 0.88130 0.94116 1.20131 1.04324 0.97086 0.92463 1.22614 0.96524 0.97261 0.93975 1.18298 0.89280 0.89394 0.92745 1.19285 1.21028 1.16965 0.89988 0.89594 1.25959 0.93023 0.92990 1.02428 1.69882 1.11017 1.22493 1.38056 0.86178 0.79696 0.79643 0.80276 1.18529 1.20024 1.18684 1.21277 1.28457 1.01247 0.79089 1.42039 1.37224 1.10559 1.06125 0.92724 0.92494 0.92908 0.91377 0.90208 0.92787 0.92347 0.92360 0.86310 0.84523 0.90168 0.85003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.89 37.16 0.37 -1.87 16 2 C -0.02 -0.31 6.37 -27.88 -0.18 -0.49 16 3 C 0.10 2.20 7.24 -154.09 -1.12 1.08 16 4 N -0.47 -10.91 11.19 -6.11 -0.07 -10.97 16 5 C -0.04 -1.01 7.20 -81.92 -0.59 -1.60 16 6 C -0.05 -0.81 10.41 36.01 0.37 -0.43 16 7 C -0.01 -0.23 6.72 -84.05 -0.56 -0.79 16 8 C -0.12 -2.73 10.03 -39.44 -0.40 -3.13 16 9 C -0.08 -1.97 8.86 -37.18 -0.33 -2.30 16 10 C 0.11 2.70 5.70 -104.99 -0.60 2.10 16 11 C -0.44 -10.81 9.04 -37.97 -0.34 -11.15 16 12 H 0.09 1.99 7.90 -52.49 -0.41 1.58 16 13 C 0.08 1.72 5.19 -17.39 -0.09 1.63 16 14 N -0.79 -18.60 10.86 55.53 0.60 -17.99 16 15 Si 0.92 17.06 29.59 -169.99 -5.03 12.03 16 16 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 17 H -0.28 -4.99 7.11 56.52 0.40 -4.59 16 18 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 19 C -0.18 -4.37 10.59 -15.26 -0.16 -4.53 16 20 N -0.29 -7.17 2.93 -56.87 -0.17 -7.34 16 21 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 22 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 23 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.07 1.16 7.97 -51.93 -0.41 0.74 16 25 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.12 2.31 8.06 -52.49 -0.42 1.88 16 30 H 0.14 3.25 6.24 -52.48 -0.33 2.92 16 31 H 0.29 6.12 8.30 -40.82 -0.34 5.78 16 32 H 0.13 3.01 7.92 -52.48 -0.42 2.59 16 LS Contribution 276.52 15.07 4.17 4.17 Total: -1.00 -27.78 276.52 -8.21 -35.98 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -4.09 Total: 5.61 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: -3.62 Total: -21.48 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.37 Total: -36.31 kcal Atomic # 14 Polarization: 17.06 SS G_CDS: -5.03 Total: 12.03 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -27.78 -8.21 -35.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261045237.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.441 kcal (2) G-P(sol) polarization free energy of solvation -27.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds