Wall clock time and date at job start Mon Mar 30 2020 02:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.46992 * 2 1 4 4 N 1.30750 * 125.41604 * 89.97906 * 3 2 1 5 5 C 1.33493 * 109.90165 * 179.97438 * 4 3 2 6 6 C 1.50704 * 126.14699 * 179.97438 * 5 4 3 7 7 C 1.38107 * 107.70603 * 0.02562 * 5 4 3 8 8 C 1.41257 * 132.66549 * 179.97438 * 7 5 4 9 9 C 1.35420 * 119.80483 * 179.97438 * 8 7 5 10 10 C 1.46687 * 118.98846 * 0.02562 * 9 8 7 11 11 C 1.41206 * 120.38057 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00527 * 203.27062 * 11 10 9 13 13 C 1.39539 * 119.99713 * 23.26417 * 11 10 9 14 14 N 1.31080 * 120.00257 * 17.57256 * 13 11 10 15 15 Si 1.86809 * 120.00193 * 197.56594 * 13 11 10 16 16 H 1.48500 * 109.46743 * 60.00083 * 15 13 11 17 17 H 1.48491 * 109.47303 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47235 * 300.00724 * 15 13 11 19 19 C 1.39245 * 119.24747 * 359.97438 * 10 9 8 20 20 N 1.36158 * 120.16218 * 0.02562 * 19 10 9 21 21 H 1.08996 * 109.46920 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47120 * 299.99849 * 1 2 3 23 23 H 1.09003 * 109.47228 * 59.99761 * 1 2 3 24 24 H 1.09003 * 109.46923 * 240.00709 * 2 1 3 25 25 H 1.08997 * 109.47147 * 120.00678 * 2 1 3 26 26 H 1.08994 * 109.47242 * 90.02787 * 6 5 4 27 27 H 1.09003 * 109.46785 * 210.03180 * 6 5 4 28 28 H 1.08996 * 109.46825 * 330.02836 * 6 5 4 29 29 H 1.08002 * 120.09419 * 359.97438 * 8 7 5 30 30 H 1.08005 * 120.50650 * 179.97438 * 9 8 7 31 31 H 0.97008 * 120.00216 * 179.97438 * 14 13 11 32 32 H 1.08003 * 119.92439 * 180.02562 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2845 2.1353 1.0656 5 6 2.7139 3.3479 0.7085 6 6 3.1072 4.4626 1.6433 7 6 2.7318 3.3976 -0.6716 8 6 3.0901 4.4106 -1.5885 9 6 3.0073 4.1739 -2.9192 10 6 2.5432 2.8610 -3.3803 11 6 2.4451 2.5828 -4.7612 12 1 1.7791 1.8073 -5.1099 13 6 3.2087 3.3098 -5.6753 14 7 4.2486 3.9932 -5.2636 15 14 2.7489 3.3089 -7.4859 16 1 1.3778 3.8557 -7.6486 17 1 3.7109 4.1508 -8.2414 18 1 2.7925 1.9191 -8.0071 19 6 2.2004 1.8922 -2.4408 20 7 2.2961 2.1653 -1.1103 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5137 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 4.1709 4.3888 1.8694 27 1 2.9019 5.4229 1.1703 28 1 2.5332 4.3821 2.5664 29 1 3.4292 5.3710 -1.2291 30 1 3.2781 4.9405 -3.6303 31 1 4.7797 4.4983 -5.8992 32 1 1.8578 0.9216 -2.7681 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261045237.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:19 Heat of formation + Delta-G solvation = 37.288816 kcal Electronic energy + Delta-G solvation = -15518.066670 eV Core-core repulsion = 13056.852863 eV Total energy + Delta-G solvation = -2461.213807 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.08706 -38.02612 -35.45491 -35.19354 -33.25118 -31.60132 -30.71154 -27.67647 -26.56247 -24.55253 -23.44686 -21.84110 -21.15547 -19.21431 -17.52963 -17.29342 -16.95436 -16.46501 -15.62878 -15.44996 -14.96723 -14.57465 -14.09560 -13.87370 -13.74083 -13.35225 -13.27482 -12.99819 -12.88342 -12.77191 -12.43415 -12.11330 -11.97826 -11.89683 -11.66273 -11.16788 -11.00141 -10.86238 -9.70344 -8.86773 -7.98652 -6.49291 0.46454 0.79164 1.38873 1.48153 1.52415 2.13248 2.24861 2.34926 2.51915 3.34003 3.62984 4.05829 4.10045 4.29564 4.35360 4.42465 4.44374 4.59796 4.76620 4.82131 4.94416 4.95350 4.97805 5.04947 5.10218 5.20261 5.28944 5.46918 5.60096 5.69881 6.04405 6.09832 6.24803 6.52224 6.69528 6.96485 7.31764 8.14609 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.031009 B = 0.007885 C = 0.006479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.754992 B = 3550.370080 C = 4320.808358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.020 4.020 3 C 0.093 3.907 4 N -0.489 5.489 5 C -0.045 4.045 6 C -0.045 4.045 7 C -0.049 4.049 8 C -0.111 4.111 9 C -0.105 4.105 10 C 0.084 3.916 11 C -0.471 4.471 12 H 0.088 0.912 13 C 0.040 3.960 14 N -0.814 5.814 15 Si 0.991 3.009 16 H -0.258 1.258 17 H -0.264 1.264 18 H -0.259 1.259 19 C -0.202 4.202 20 N -0.309 5.309 21 H 0.090 0.910 22 H 0.051 0.949 23 H 0.035 0.965 24 H 0.072 0.928 25 H 0.097 0.903 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.150 0.850 30 H 0.135 0.865 31 H 0.297 0.703 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.514 -0.413 1.617 3.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.059 4.059 3 C -0.159 4.159 4 N -0.206 5.206 5 C -0.183 4.183 6 C -0.103 4.103 7 C -0.164 4.164 8 C -0.130 4.130 9 C -0.127 4.127 10 C 0.080 3.920 11 C -0.499 4.499 12 H 0.106 0.894 13 C -0.177 4.177 14 N -0.438 5.438 15 Si 0.811 3.189 16 H -0.182 1.182 17 H -0.188 1.188 18 H -0.183 1.183 19 C -0.324 4.324 20 N 0.026 4.974 21 H 0.109 0.891 22 H 0.070 0.930 23 H 0.054 0.946 24 H 0.091 0.909 25 H 0.115 0.885 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.167 0.833 30 H 0.153 0.847 31 H 0.108 0.892 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.461 -0.733 2.301 3.448 hybrid contribution 0.149 0.258 -1.652 1.679 sum -2.312 -0.475 0.649 2.448 Atomic orbital electron populations 1.21654 0.93529 1.02926 1.01052 1.19813 0.96787 0.85880 1.03461 1.23579 1.14035 0.98623 0.79710 1.69534 1.18056 1.04384 1.28609 1.21329 1.10969 0.95809 0.90178 1.19894 1.01024 0.92950 0.96399 1.19601 1.12917 0.88732 0.95170 1.20458 1.02678 0.98015 0.91870 1.22624 0.98312 0.97125 0.94647 1.18663 0.89667 0.90146 0.93510 1.19584 1.21904 1.18041 0.90397 0.89409 1.26807 0.92339 0.91960 1.06608 1.69910 1.11513 1.22485 1.39932 0.85097 0.79479 0.79824 0.74528 1.18246 1.18846 1.18284 1.21339 1.29985 1.01571 0.79473 1.42231 1.37760 1.11125 1.06284 0.89103 0.92986 0.94604 0.90918 0.88475 0.91294 0.90497 0.91047 0.83282 0.84741 0.89190 0.84588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.99 9.89 71.98 0.71 -3.27 16 2 C -0.02 -0.71 6.37 29.85 0.19 -0.51 16 3 C 0.09 4.17 7.24 137.67 1.00 5.16 16 4 N -0.49 -22.41 11.19 -173.23 -1.94 -24.35 16 5 C -0.04 -1.98 7.20 42.28 0.30 -1.67 16 6 C -0.04 -1.48 10.41 71.24 0.74 -0.74 16 7 C -0.05 -2.37 6.72 38.90 0.26 -2.11 16 8 C -0.11 -5.03 10.03 22.36 0.22 -4.81 16 9 C -0.11 -5.18 8.86 23.83 0.21 -4.97 16 10 C 0.08 4.37 5.70 -20.10 -0.11 4.26 16 11 C -0.47 -23.38 9.04 23.31 0.21 -23.17 16 12 H 0.09 4.16 7.90 -2.91 -0.02 4.14 16 13 C 0.04 1.83 5.19 85.12 0.44 2.27 16 14 N -0.81 -38.34 10.86 21.76 0.24 -38.10 16 15 Si 0.99 34.27 29.59 68.60 2.03 36.30 16 16 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16 17 H -0.26 -8.60 7.11 99.48 0.71 -7.89 16 18 H -0.26 -8.75 7.11 99.48 0.71 -8.04 16 19 C -0.20 -10.19 10.59 84.26 0.89 -9.30 16 20 N -0.31 -15.22 2.93 -333.83 -0.98 -16.20 16 21 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 22 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.07 2.43 7.97 -2.39 -0.02 2.41 16 25 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 26 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.15 5.61 8.06 -2.91 -0.02 5.58 16 30 H 0.13 6.52 6.24 -2.91 -0.02 6.50 16 31 H 0.30 12.49 8.30 -92.70 -0.77 11.73 16 32 H 0.14 6.44 7.92 -2.91 -0.02 6.42 16 Total: -1.00 -59.85 276.52 5.53 -54.32 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 1.11 Total: 26.88 kcal Atomic # 6 Polarization: -43.93 SS G_CDS: 5.07 Total: -38.86 kcal Atomic # 7 Polarization: -75.97 SS G_CDS: -2.68 Total: -78.65 kcal Atomic # 14 Polarization: 34.27 SS G_CDS: 2.03 Total: 36.30 kcal Total: -59.85 5.53 -54.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261045237.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.613 kcal (2) G-P(sol) polarization free energy of solvation -59.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds