Wall clock time and date at job start Mon Mar 30 2020 03:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46894 * 111.00221 * 2 1 4 4 C 1.46901 * 110.99731 * 123.96050 * 2 1 3 5 5 C 1.53001 * 109.46975 * 169.99926 * 4 2 1 6 6 N 1.46897 * 109.47121 * 179.97438 * 5 4 2 7 7 C 1.46898 * 111.00150 * 174.61864 * 6 5 4 8 8 C 1.50699 * 112.49474 * 297.85011 * 7 6 5 9 9 H 1.08005 * 119.99619 * 123.13124 * 8 7 6 10 10 C 1.37877 * 120.00168 * 302.84902 * 8 7 6 11 11 N 1.31512 * 119.99948 * 354.39095 * 10 8 7 12 12 Si 1.86800 * 120.00040 * 174.38987 * 10 8 7 13 13 H 1.48501 * 109.47075 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.47083 * 120.00528 * 12 10 8 15 15 H 1.48502 * 109.46898 * 240.00539 * 12 10 8 16 16 C 1.53042 * 113.15054 * 67.63489 * 7 6 5 17 17 S 1.81499 * 89.86326 * 82.41519 * 16 7 6 18 18 C 1.53044 * 113.15054 * 168.06388 * 7 6 5 19 19 H 1.09002 * 109.47121 * 296.04691 * 1 2 3 20 20 H 1.09004 * 109.47090 * 56.04180 * 1 2 3 21 21 H 1.08997 * 109.47551 * 176.04477 * 1 2 3 22 22 H 1.09006 * 109.47002 * 183.95318 * 3 2 1 23 23 H 1.09001 * 109.47399 * 303.95378 * 3 2 1 24 24 H 1.09000 * 109.47102 * 63.95523 * 3 2 1 25 25 H 1.08993 * 109.47661 * 49.99414 * 4 2 1 26 26 H 1.08999 * 109.46513 * 289.99282 * 4 2 1 27 27 H 1.08998 * 109.46910 * 59.99329 * 5 4 2 28 28 H 1.08999 * 109.46974 * 299.99074 * 5 4 2 29 29 H 1.00903 * 111.00013 * 298.57546 * 6 5 4 30 30 H 0.96996 * 120.00229 * 179.97438 * 11 10 8 31 31 H 1.09001 * 113.14627 * 197.65652 * 16 7 6 32 32 H 1.08993 * 113.15073 * 327.14536 * 16 7 6 33 33 H 1.08995 * 113.15046 * 32.86497 * 18 7 6 34 34 H 1.09006 * 113.14893 * 162.30078 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.9953 -0.7661 1.1375 5 6 3.5044 -0.9555 0.9703 6 7 4.0309 -1.7211 2.1081 7 6 5.4540 -2.0327 1.9196 8 6 5.6999 -2.8950 0.7084 9 1 6.3718 -2.5578 -0.0671 10 6 5.0717 -4.1169 0.5929 11 7 4.3456 -4.5795 1.5871 12 14 5.2517 -5.1152 -0.9757 13 1 6.1145 -4.3792 -1.9345 14 1 5.8712 -6.4271 -0.6591 15 1 3.9129 -5.3329 -1.5802 16 6 6.3527 -0.7950 1.9696 17 16 6.3474 -0.8697 3.7830 18 6 6.1255 -2.5685 3.1861 19 1 -0.3633 0.4513 0.9233 20 1 -0.3633 0.5741 -0.8524 21 1 -0.3634 -1.0252 -0.0709 22 1 3.0828 1.3431 -0.0709 23 1 1.5898 1.9163 -0.8524 24 1 1.7044 1.8723 0.9233 25 1 1.5088 -1.7407 1.1756 26 1 1.7975 -0.2249 2.0627 27 1 3.9908 0.0192 0.9322 28 1 3.7022 -1.4968 0.0451 29 1 3.8803 -1.2287 2.9758 30 1 3.9034 -5.4389 1.5058 31 1 7.3387 -0.9637 1.5367 32 1 5.8714 0.1002 1.5758 33 1 5.4541 -3.1579 3.8105 34 1 7.0674 -3.0803 2.9881 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261049010.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:46 Heat of formation + Delta-G solvation = 33.813889 kcal Electronic energy + Delta-G solvation = -14859.147774 eV Core-core repulsion = 12533.227235 eV Total energy + Delta-G solvation = -2325.920539 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -37.76768 -36.60050 -32.20357 -31.56509 -27.47374 -27.16477 -25.46164 -25.24206 -22.83882 -20.28936 -19.42247 -16.53149 -15.32496 -15.25857 -14.98776 -14.67611 -14.55139 -13.96334 -13.88174 -12.96152 -12.56675 -12.20629 -11.99698 -11.89614 -11.75569 -11.47567 -11.12227 -11.00375 -10.93313 -10.46004 -10.37287 -10.23116 -9.99616 -9.52115 -8.86670 -8.37905 -8.07532 -7.12935 -6.95963 -6.01263 -4.14622 2.75473 3.03206 3.29559 3.38905 3.41388 4.20973 4.40358 5.18989 5.31100 5.39748 5.51525 5.58064 5.65709 5.83850 5.84602 5.97603 6.03003 6.07466 6.15175 6.26363 6.36587 6.51934 6.58064 6.72371 6.95520 7.09152 7.32442 7.42484 7.76319 7.96762 8.40542 8.71389 8.96960 9.53568 11.02844 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.017136 B = 0.011546 C = 0.007750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.587296 B = 2424.580106 C = 3611.915236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.546 5.546 3 C 0.023 3.977 4 C 0.061 3.939 5 C 0.082 3.918 6 N -0.635 5.635 7 C 0.265 3.735 8 C -0.524 4.524 9 H 0.063 0.937 10 C 0.093 3.907 11 N -0.839 5.839 12 Si 0.883 3.117 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.282 1.282 16 C -0.091 4.091 17 S -0.417 6.417 18 C -0.022 4.022 19 H 0.020 0.980 20 H 0.062 0.938 21 H 0.067 0.933 22 H 0.072 0.928 23 H 0.061 0.939 24 H 0.019 0.981 25 H 0.082 0.918 26 H 0.022 0.978 27 H 0.006 0.994 28 H 0.090 0.910 29 H 0.317 0.683 30 H 0.258 0.742 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.896 6.570 -1.706 7.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.270 5.270 3 C -0.125 4.125 4 C -0.067 4.067 5 C -0.048 4.048 6 N -0.264 5.264 7 C 0.172 3.828 8 C -0.565 4.565 9 H 0.081 0.919 10 C -0.116 4.116 11 N -0.472 5.472 12 Si 0.711 3.289 13 H -0.197 1.197 14 H -0.212 1.212 15 H -0.208 1.208 16 C -0.242 4.242 17 S -0.192 6.192 18 C -0.170 4.170 19 H 0.038 0.962 20 H 0.081 0.919 21 H 0.086 0.914 22 H 0.090 0.910 23 H 0.080 0.920 24 H 0.038 0.962 25 H 0.100 0.900 26 H 0.040 0.960 27 H 0.024 0.976 28 H 0.108 0.892 29 H 0.134 0.866 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.985 6.394 -1.059 7.608 hybrid contribution 0.169 0.164 -0.677 0.717 sum -3.816 6.558 -1.736 7.783 Atomic orbital electron populations 1.22339 0.87924 1.02103 0.99719 1.61891 1.07233 1.13447 1.44411 1.22414 1.01406 0.89087 0.99592 1.22129 0.97377 0.97777 0.89420 1.21604 0.91165 0.94603 0.97399 1.60258 1.16567 1.47070 1.02470 1.19056 0.83331 0.87182 0.93213 1.20595 1.29098 1.02055 1.04727 0.91868 1.24883 0.94071 0.97011 0.95626 1.70060 1.29284 1.17999 1.29891 0.86701 0.78025 0.80056 0.84162 1.19744 1.21163 1.20805 1.25531 1.05240 1.04916 0.88467 1.88464 1.97129 1.18642 1.14974 1.24858 1.03154 0.90639 0.98394 0.96180 0.91904 0.91375 0.90970 0.92024 0.96207 0.89977 0.95981 0.97630 0.89186 0.86565 0.93170 0.89015 0.91120 0.89145 0.89132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.57 60.06 0.57 0.93 16 2 N -0.55 -8.58 5.02 -251.27 -1.26 -9.85 16 3 C 0.02 0.32 9.32 60.06 0.56 0.88 16 4 C 0.06 1.07 5.26 -3.82 -0.02 1.05 16 5 C 0.08 1.64 5.22 -3.83 -0.02 1.62 16 6 N -0.63 -13.96 5.81 -111.84 -0.65 -14.61 16 7 C 0.27 6.01 0.41 -132.71 -0.05 5.96 16 8 C -0.52 -13.04 7.20 -34.44 -0.25 -13.29 16 9 H 0.06 1.58 7.82 -52.48 -0.41 1.17 16 10 C 0.09 2.36 5.37 -17.82 -0.10 2.26 16 11 N -0.84 -22.15 12.64 55.43 0.70 -21.45 16 12 Si 0.88 20.00 29.54 -169.99 -5.02 14.98 16 13 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 14 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 C -0.09 -1.87 7.05 37.18 0.26 -1.61 16 17 S -0.42 -8.74 23.80 -107.50 -2.56 -11.30 16 18 C -0.02 -0.50 6.89 37.18 0.26 -0.24 16 19 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 20 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 21 H 0.07 0.88 8.12 -51.93 -0.42 0.45 16 22 H 0.07 1.04 6.47 -51.93 -0.34 0.70 16 23 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 24 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 25 H 0.08 1.56 8.06 -51.93 -0.42 1.15 16 26 H 0.02 0.38 8.12 -51.93 -0.42 -0.04 16 27 H 0.01 0.11 5.23 -51.93 -0.27 -0.16 16 28 H 0.09 2.05 7.15 -51.93 -0.37 1.68 16 29 H 0.32 6.80 7.74 -39.29 -0.30 6.50 16 30 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 31 H 0.09 1.84 8.11 -51.93 -0.42 1.42 16 32 H 0.07 1.40 6.74 -51.93 -0.35 1.05 16 33 H 0.09 2.15 8.14 -51.93 -0.42 1.72 16 34 H 0.09 2.02 8.11 -51.93 -0.42 1.60 16 LS Contribution 285.07 15.07 4.30 4.30 Total: -1.00 -25.85 285.07 -8.67 -34.53 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -5.39 Total: 5.83 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: 1.22 Total: -2.43 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: -1.21 Total: -45.90 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 16 Polarization: -8.74 SS G_CDS: -2.56 Total: -11.30 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -25.85 -8.67 -34.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261049010.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.343 kcal (2) G-P(sol) polarization free energy of solvation -25.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds