Wall clock time and date at job start Mon Mar 30 2020 03:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38236 * 119.99764 * 2 1 4 4 C 1.38236 * 120.00200 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.00111 * 179.97438 * 4 3 2 6 6 C 1.38231 * 119.99895 * 0.02562 * 4 3 2 7 7 C 1.38242 * 120.00127 * 359.95255 * 6 4 3 8 8 C 1.50696 * 119.99919 * 180.02562 * 7 6 4 9 9 C 1.50700 * 112.90863 * 305.02601 * 8 7 6 10 10 H 1.08003 * 119.99514 * 133.76751 * 9 8 7 11 11 C 1.37876 * 120.00007 * 313.76412 * 9 8 7 12 12 N 1.31519 * 119.99407 * 170.93326 * 11 9 8 13 13 Si 1.86796 * 120.00301 * 350.93474 * 11 9 8 14 14 H 1.48497 * 109.47141 * 84.78263 * 13 11 9 15 15 H 1.48499 * 109.47224 * 204.78406 * 13 11 9 16 16 H 1.48506 * 109.47063 * 324.78053 * 13 11 9 17 17 C 1.53785 * 113.61179 * 173.77968 * 8 7 6 18 18 C 1.53788 * 87.08098 * 220.01905 * 17 8 7 19 19 C 1.53776 * 113.61553 * 76.28452 * 8 7 6 20 20 C 1.38236 * 119.99848 * 0.27762 * 7 6 4 21 21 H 1.08991 * 109.46908 * 90.00472 * 1 2 3 22 22 H 1.09006 * 109.46639 * 210.00040 * 1 2 3 23 23 H 1.08997 * 109.47536 * 330.00140 * 1 2 3 24 24 H 1.08002 * 120.00071 * 359.97438 * 3 2 1 25 25 H 1.08993 * 109.46947 * 270.02364 * 5 4 3 26 26 H 1.08997 * 109.46868 * 30.02816 * 5 4 3 27 27 H 1.09007 * 109.46869 * 150.01859 * 5 4 3 28 28 H 1.08003 * 120.00233 * 179.97438 * 6 4 3 29 29 H 0.97003 * 119.99093 * 180.02562 * 12 11 9 30 30 H 1.08997 * 113.61717 * 105.46919 * 17 8 7 31 31 H 1.09004 * 113.61358 * 334.56639 * 17 8 7 32 32 H 1.08993 * 113.61241 * 139.97690 * 18 17 8 33 33 H 1.08993 * 113.61356 * 270.88445 * 18 17 8 34 34 H 1.09000 * 113.61457 * 25.42603 * 19 8 7 35 35 H 1.09006 * 113.68981 * 254.54004 * 19 8 7 36 36 H 1.07994 * 120.00268 * 179.71943 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.3339 2.5025 -0.0011 6 6 4.2717 0.0002 -0.0016 7 6 3.5806 -1.1971 -0.0012 8 6 4.3342 -2.5021 -0.0017 9 6 5.3167 -2.6116 -1.1392 10 1 6.3210 -2.9626 -0.9532 11 6 4.9334 -2.2637 -2.4171 12 7 5.8314 -2.1874 -3.3750 13 14 3.1390 -1.9009 -2.7879 14 1 2.8429 -0.4829 -2.4612 15 1 2.8724 -2.1430 -4.2286 16 1 2.2749 -2.7884 -1.9687 17 6 3.4293 -3.7360 0.1516 18 6 4.5133 -4.3188 1.0738 19 6 4.9326 -2.8685 1.3666 20 6 2.1983 -1.1971 -0.0054 21 1 -0.3633 -0.0001 -1.0276 22 1 -0.3633 -0.8901 0.5139 23 1 -0.3634 0.8899 0.5138 24 1 1.6581 2.1325 -0.0004 25 1 4.5148 2.8171 -1.0289 26 1 3.7452 3.2620 0.5132 27 1 5.2868 2.3722 0.5121 28 1 5.3518 0.0002 -0.0024 29 1 5.5618 -1.9423 -4.2740 30 1 3.2952 -4.2968 -0.7734 31 1 2.4886 -3.5270 0.6611 32 1 4.1127 -4.8413 1.9424 33 1 5.2728 -4.8946 0.5451 34 1 4.4029 -2.4223 2.2084 35 1 6.0122 -2.7292 1.4240 36 1 1.6583 -2.1324 -0.0096 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261108510.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:29 Heat of formation + Delta-G solvation = 34.639528 kcal Electronic energy + Delta-G solvation = -16496.274331 eV Core-core repulsion = 14138.485986 eV Total energy + Delta-G solvation = -2357.788345 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.58480 -37.36824 -33.01691 -32.30477 -31.28183 -27.16616 -26.52251 -26.10264 -24.50550 -23.04949 -20.49500 -19.98387 -18.19305 -16.17125 -15.79609 -14.90642 -14.82814 -14.30526 -13.65200 -13.51063 -12.98136 -12.87863 -12.63878 -12.35463 -12.19168 -11.77689 -11.63311 -11.52629 -11.24544 -10.95808 -10.54227 -10.50422 -10.17244 -10.08282 -9.78978 -9.31980 -9.20105 -8.98950 -8.42523 -7.82991 -7.64248 -6.09433 -4.09608 2.06032 2.12094 3.42325 3.48729 3.53899 4.40807 4.53352 5.14886 5.26355 5.37833 5.49303 5.68674 5.70528 5.73868 5.82042 5.83290 5.86736 5.99311 6.05210 6.09616 6.17067 6.24938 6.33436 6.45109 6.50616 6.55348 6.79052 6.83183 6.86637 7.05134 7.10239 7.19208 7.26394 7.38982 7.65645 7.79315 7.85538 8.51988 8.93248 9.55670 11.01291 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.020206 B = 0.012909 C = 0.011835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.408141 B = 2168.460596 C = 2365.393523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.098 4.098 3 C -0.140 4.140 4 C -0.095 4.095 5 C -0.107 4.107 6 C -0.096 4.096 7 C -0.037 4.037 8 C 0.066 3.934 9 C -0.494 4.494 10 H 0.078 0.922 11 C 0.086 3.914 12 N -0.894 5.894 13 Si 0.862 3.138 14 H -0.264 1.264 15 H -0.303 1.303 16 H -0.255 1.255 17 C -0.151 4.151 18 C -0.127 4.127 19 C -0.124 4.124 20 C -0.141 4.141 21 H 0.062 0.938 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.108 0.892 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.124 0.876 29 H 0.264 0.736 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.045 0.955 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.296 4.576 7.570 11.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.098 4.098 3 C -0.158 4.158 4 C -0.095 4.095 5 C -0.164 4.164 6 C -0.114 4.114 7 C -0.037 4.037 8 C 0.065 3.935 9 C -0.530 4.530 10 H 0.096 0.904 11 C -0.117 4.117 12 N -0.531 5.531 13 Si 0.690 3.310 14 H -0.189 1.189 15 H -0.232 1.232 16 H -0.179 1.179 17 C -0.189 4.189 18 C -0.165 4.165 19 C -0.162 4.162 20 C -0.159 4.159 21 H 0.080 0.920 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.126 0.874 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.142 0.858 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.254 4.622 7.374 11.329 hybrid contribution -0.974 0.204 -0.562 1.143 sum -8.227 4.826 6.812 11.721 Atomic orbital electron populations 1.20708 0.92186 1.01913 1.01617 1.19731 0.95252 0.93448 1.01348 1.20617 0.93542 0.96682 1.04932 1.19853 0.93693 0.95260 1.00689 1.20711 0.99644 0.94217 1.01832 1.20885 1.00233 0.90866 0.99373 1.20309 0.92759 0.96845 0.93799 1.18791 0.93332 0.86646 0.94691 1.20498 0.97865 1.45088 0.89586 0.90436 1.24895 0.96994 0.93686 0.96167 1.69917 1.33501 1.47509 1.02181 0.87192 0.86688 0.80852 0.76287 1.18909 1.23155 1.17936 1.23386 0.96114 1.00336 0.99016 1.22571 0.99459 0.96129 0.98295 1.22881 1.00051 0.96196 0.97060 1.21066 0.94520 0.97139 1.03170 0.91965 0.92021 0.92142 0.87364 0.91716 0.92396 0.91748 0.85797 0.92654 0.91980 0.92451 0.93645 0.90297 0.92262 0.92111 0.86316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 10.01 36.01 0.36 -1.19 16 2 C -0.10 -1.81 5.73 -104.62 -0.60 -2.41 16 3 C -0.14 -2.53 9.36 -39.58 -0.37 -2.90 16 4 C -0.09 -1.80 5.88 -104.62 -0.62 -2.42 16 5 C -0.11 -1.62 10.01 36.01 0.36 -1.26 16 6 C -0.10 -2.06 8.78 -39.58 -0.35 -2.41 16 7 C -0.04 -0.82 2.50 -104.62 -0.26 -1.08 16 8 C 0.07 1.52 0.49 -156.00 -0.08 1.44 16 9 C -0.49 -13.45 8.33 -34.44 -0.29 -13.74 16 10 H 0.08 2.29 8.06 -52.48 -0.42 1.87 16 11 C 0.09 2.45 5.41 -17.82 -0.10 2.36 16 12 N -0.89 -27.23 13.96 55.43 0.77 -26.46 16 13 Si 0.86 22.18 22.93 -169.99 -3.90 18.28 16 14 H -0.26 -6.86 6.59 56.52 0.37 -6.49 16 15 H -0.30 -8.02 7.11 56.52 0.40 -7.62 16 16 H -0.25 -6.18 4.99 56.52 0.28 -5.89 16 17 C -0.15 -3.18 5.25 -25.91 -0.14 -3.31 16 18 C -0.13 -2.43 7.80 -25.92 -0.20 -2.63 16 19 C -0.12 -2.50 7.21 -25.92 -0.19 -2.68 16 20 C -0.14 -2.91 5.64 -39.58 -0.22 -3.14 16 21 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 23 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 24 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 27 H 0.06 0.91 8.09 -51.92 -0.42 0.49 16 28 H 0.12 2.73 8.02 -52.48 -0.42 2.31 16 29 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 30 H 0.06 1.39 7.33 -51.93 -0.38 1.01 16 31 H 0.06 1.11 6.22 -51.93 -0.32 0.78 16 32 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 34 H 0.06 1.10 8.09 -51.93 -0.42 0.68 16 35 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 36 H 0.12 2.37 5.47 -52.49 -0.29 2.08 16 LS Contribution 280.54 15.07 4.23 4.23 Total: -1.00 -29.95 280.54 -7.33 -37.28 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -5.75 Total: 2.05 kcal Atomic # 6 Polarization: -32.69 SS G_CDS: -2.68 Total: -35.37 kcal Atomic # 7 Polarization: -27.23 SS G_CDS: 0.77 Total: -26.46 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -3.90 Total: 18.28 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.95 -7.33 -37.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261108510.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.917 kcal (2) G-P(sol) polarization free energy of solvation -29.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds