Wall clock time and date at job start Mon Mar 30 2020 03:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38236 * 119.99764 * 2 1 4 4 C 1.38236 * 120.00200 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.00111 * 179.97438 * 4 3 2 6 6 C 1.38231 * 119.99895 * 0.02562 * 4 3 2 7 7 C 1.38242 * 120.00127 * 359.95255 * 6 4 3 8 8 C 1.50696 * 119.99919 * 180.02562 * 7 6 4 9 9 C 1.50700 * 112.90863 * 305.02601 * 8 7 6 10 10 H 1.08003 * 119.99514 * 133.76751 * 9 8 7 11 11 C 1.37876 * 120.00007 * 313.76412 * 9 8 7 12 12 N 1.31519 * 119.99407 * 170.93326 * 11 9 8 13 13 Si 1.86796 * 120.00301 * 350.93474 * 11 9 8 14 14 H 1.48497 * 109.47141 * 84.78263 * 13 11 9 15 15 H 1.48499 * 109.47224 * 204.78406 * 13 11 9 16 16 H 1.48506 * 109.47063 * 324.78053 * 13 11 9 17 17 C 1.53785 * 113.61179 * 173.77968 * 8 7 6 18 18 C 1.53788 * 87.08098 * 220.01905 * 17 8 7 19 19 C 1.53776 * 113.61553 * 76.28452 * 8 7 6 20 20 C 1.38236 * 119.99848 * 0.27762 * 7 6 4 21 21 H 1.08991 * 109.46908 * 90.00472 * 1 2 3 22 22 H 1.09006 * 109.46639 * 210.00040 * 1 2 3 23 23 H 1.08997 * 109.47536 * 330.00140 * 1 2 3 24 24 H 1.08002 * 120.00071 * 359.97438 * 3 2 1 25 25 H 1.08993 * 109.46947 * 270.02364 * 5 4 3 26 26 H 1.08997 * 109.46868 * 30.02816 * 5 4 3 27 27 H 1.09007 * 109.46869 * 150.01859 * 5 4 3 28 28 H 1.08003 * 120.00233 * 179.97438 * 6 4 3 29 29 H 0.97003 * 119.99093 * 180.02562 * 12 11 9 30 30 H 1.08997 * 113.61717 * 105.46919 * 17 8 7 31 31 H 1.09004 * 113.61358 * 334.56639 * 17 8 7 32 32 H 1.08993 * 113.61241 * 139.97690 * 18 17 8 33 33 H 1.08993 * 113.61356 * 270.88445 * 18 17 8 34 34 H 1.09000 * 113.61457 * 25.42603 * 19 8 7 35 35 H 1.09006 * 113.68981 * 254.54004 * 19 8 7 36 36 H 1.07994 * 120.00268 * 179.71943 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.3339 2.5025 -0.0011 6 6 4.2717 0.0002 -0.0016 7 6 3.5806 -1.1971 -0.0012 8 6 4.3342 -2.5021 -0.0017 9 6 5.3167 -2.6116 -1.1392 10 1 6.3210 -2.9626 -0.9532 11 6 4.9334 -2.2637 -2.4171 12 7 5.8314 -2.1874 -3.3750 13 14 3.1390 -1.9009 -2.7879 14 1 2.8429 -0.4829 -2.4612 15 1 2.8724 -2.1430 -4.2286 16 1 2.2749 -2.7884 -1.9687 17 6 3.4293 -3.7360 0.1516 18 6 4.5133 -4.3188 1.0738 19 6 4.9326 -2.8685 1.3666 20 6 2.1983 -1.1971 -0.0054 21 1 -0.3633 -0.0001 -1.0276 22 1 -0.3633 -0.8901 0.5139 23 1 -0.3634 0.8899 0.5138 24 1 1.6581 2.1325 -0.0004 25 1 4.5148 2.8171 -1.0289 26 1 3.7452 3.2620 0.5132 27 1 5.2868 2.3722 0.5121 28 1 5.3518 0.0002 -0.0024 29 1 5.5618 -1.9423 -4.2740 30 1 3.2952 -4.2968 -0.7734 31 1 2.4886 -3.5270 0.6611 32 1 4.1127 -4.8413 1.9424 33 1 5.2728 -4.8946 0.5451 34 1 4.4029 -2.4223 2.2084 35 1 6.0122 -2.7292 1.4240 36 1 1.6583 -2.1324 -0.0096 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261108510.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:28 Heat of formation + Delta-G solvation = 18.104959 kcal Electronic energy + Delta-G solvation = -16496.991323 eV Core-core repulsion = 14138.485986 eV Total energy + Delta-G solvation = -2358.505338 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.16650 -38.93976 -34.53959 -34.24743 -32.81180 -28.73089 -28.03208 -27.65708 -26.10755 -24.84322 -22.01008 -21.41975 -20.08477 -18.06253 -17.34171 -16.85225 -16.27443 -15.92272 -15.29468 -14.97237 -14.69743 -14.40572 -14.01059 -13.81147 -13.47601 -13.31792 -13.27382 -12.94482 -12.76985 -12.67527 -12.19491 -12.10351 -11.87837 -11.75477 -11.71991 -11.07788 -10.95861 -10.75585 -10.50349 -9.31136 -9.20976 -8.31688 -6.32884 0.56023 0.60606 1.35356 1.40665 1.45700 2.36898 2.93641 3.03226 3.93879 4.00080 4.05967 4.10466 4.15876 4.36357 4.37152 4.49154 4.57994 4.61518 4.77551 4.80246 4.85100 4.91153 4.95875 5.01120 5.04134 5.07010 5.18229 5.29322 5.37012 5.42054 5.46240 5.69525 5.76004 5.77987 5.82698 6.07918 6.29347 6.36542 6.73836 7.34640 8.82641 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.020206 B = 0.012909 C = 0.011835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.408141 B = 2168.460596 C = 2365.393523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.097 4.097 3 C -0.142 4.142 4 C -0.099 4.099 5 C -0.107 4.107 6 C -0.127 4.127 7 C -0.056 4.056 8 C 0.048 3.952 9 C -0.483 4.483 10 H 0.037 0.963 11 C 0.034 3.966 12 N -0.945 5.945 13 Si 0.920 3.080 14 H -0.266 1.266 15 H -0.317 1.317 16 H -0.230 1.230 17 C -0.146 4.146 18 C -0.117 4.117 19 C -0.119 4.119 20 C -0.158 4.158 21 H 0.069 0.931 22 H 0.074 0.926 23 H 0.086 0.914 24 H 0.144 0.856 25 H 0.065 0.935 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.100 0.900 29 H 0.262 0.738 30 H 0.043 0.957 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.047 0.953 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.477 5.686 9.269 15.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.097 4.097 3 C -0.160 4.160 4 C -0.099 4.099 5 C -0.163 4.163 6 C -0.145 4.145 7 C -0.056 4.056 8 C 0.047 3.953 9 C -0.521 4.521 10 H 0.055 0.945 11 C -0.164 4.164 12 N -0.585 5.585 13 Si 0.747 3.253 14 H -0.191 1.191 15 H -0.246 1.246 16 H -0.153 1.153 17 C -0.184 4.184 18 C -0.155 4.155 19 C -0.156 4.156 20 C -0.176 4.176 21 H 0.087 0.913 22 H 0.093 0.907 23 H 0.105 0.895 24 H 0.161 0.839 25 H 0.084 0.916 26 H 0.107 0.893 27 H 0.085 0.915 28 H 0.118 0.882 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.066 0.934 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.442 5.719 9.109 14.990 hybrid contribution 0.093 -0.091 -1.015 1.023 sum -10.349 5.629 8.094 14.293 Atomic orbital electron populations 1.20803 0.88982 1.03961 1.02635 1.20254 0.97655 0.92715 0.99084 1.21081 0.93174 0.98209 1.03549 1.20272 0.94741 0.95676 0.99170 1.20777 0.99983 0.93192 1.02371 1.20881 0.99350 0.92347 1.01913 1.20206 0.93736 0.96090 0.95583 1.18773 0.93628 0.88550 0.94340 1.20703 0.97168 1.42978 0.91213 0.94522 1.25577 1.00510 0.94155 0.96134 1.70056 1.35462 1.50363 1.02603 0.86276 0.82858 0.80837 0.75295 1.19077 1.24600 1.15348 1.23319 0.97365 0.98733 0.98955 1.22510 0.98330 0.95634 0.98997 1.22852 0.99465 0.97002 0.96311 1.21194 0.93713 0.98499 1.04197 0.91261 0.90746 0.89522 0.83852 0.91622 0.89276 0.91533 0.88207 0.92934 0.93824 0.89815 0.89928 0.91861 0.90050 0.93386 0.85693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.55 10.01 71.24 0.71 -1.84 16 2 C -0.10 -3.22 5.73 -19.86 -0.11 -3.33 16 3 C -0.14 -4.60 9.36 22.27 0.21 -4.39 16 4 C -0.10 -3.55 5.88 -19.87 -0.12 -3.67 16 5 C -0.11 -2.99 10.01 71.24 0.71 -2.27 16 6 C -0.13 -5.46 8.78 22.27 0.20 -5.27 16 7 C -0.06 -2.43 2.50 -19.87 -0.05 -2.48 16 8 C 0.05 2.19 0.49 -53.15 -0.03 2.17 16 9 C -0.48 -27.42 8.33 25.60 0.21 -27.21 16 10 H 0.04 2.31 8.06 -2.91 -0.02 2.29 16 11 C 0.03 2.02 5.41 84.65 0.46 2.48 16 12 N -0.94 -60.24 13.96 21.45 0.30 -59.94 16 13 Si 0.92 46.65 22.93 68.60 1.57 48.22 16 14 H -0.27 -13.38 6.59 99.48 0.66 -12.73 16 15 H -0.32 -16.53 7.11 99.48 0.71 -15.83 16 16 H -0.23 -10.59 4.99 99.48 0.50 -10.09 16 17 C -0.15 -5.91 5.25 31.12 0.16 -5.74 16 18 C -0.12 -4.31 7.80 31.12 0.24 -4.06 16 19 C -0.12 -4.69 7.21 31.12 0.22 -4.47 16 20 C -0.16 -6.09 5.64 22.27 0.13 -5.97 16 21 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 22 H 0.07 1.59 8.09 -2.38 -0.02 1.57 16 23 H 0.09 1.62 8.09 -2.39 -0.02 1.60 16 24 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 25 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.09 1.92 8.09 -2.39 -0.02 1.90 16 27 H 0.07 1.81 8.09 -2.38 -0.02 1.79 16 28 H 0.10 4.62 8.02 -2.91 -0.02 4.60 16 29 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 30 H 0.04 1.90 7.33 -2.39 -0.02 1.88 16 31 H 0.08 2.95 6.22 -2.39 -0.01 2.94 16 32 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.08 2.85 8.09 -2.39 -0.02 2.83 16 35 H 0.05 1.97 8.10 -2.38 -0.02 1.95 16 36 H 0.13 4.55 5.47 -2.91 -0.02 4.53 16 Total: -1.00 -67.15 280.54 5.60 -61.55 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.78 Total: 16.22 kcal Atomic # 6 Polarization: -69.01 SS G_CDS: 2.95 Total: -66.06 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: 0.30 Total: -59.94 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 1.57 Total: 48.22 kcal Total: -67.15 5.60 -61.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261108510.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.658 kcal (2) G-P(sol) polarization free energy of solvation -67.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds