Wall clock time and date at job start Mon Mar 30 2020 03:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 C 1.33987 * 125.02244 * 124.71790 * 3 2 1 5 5 C 1.38239 * 107.90574 * 179.89855 * 4 3 2 6 6 C 1.41134 * 134.81593 * 180.11917 * 5 4 3 7 7 C 1.35652 * 119.53298 * 180.25934 * 6 5 4 8 8 C 1.39681 * 121.73081 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.09336 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47562 * 90.00211 * 9 8 7 11 11 H 1.08001 * 119.99787 * 359.97438 * 10 9 8 12 12 C 1.37872 * 120.00261 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00116 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00251 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46896 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47434 * 119.99729 * 14 12 10 17 17 H 1.48500 * 109.46814 * 239.99698 * 14 12 10 18 18 C 1.35633 * 121.81493 * 359.96978 * 8 7 6 19 19 C 1.41155 * 119.59943 * 0.02562 * 18 8 7 20 20 N 1.32055 * 134.68552 * 180.02562 * 19 18 8 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99854 * 1 2 3 23 23 H 1.08996 * 109.46952 * 59.99873 * 1 2 3 24 24 H 1.09001 * 109.47289 * 239.99872 * 2 1 3 25 25 H 1.09004 * 109.47261 * 120.00128 * 2 1 3 26 26 H 1.08000 * 126.04583 * 0.02562 * 4 3 2 27 27 H 1.07994 * 120.23146 * 0.28554 * 6 5 4 28 28 H 1.08001 * 119.13696 * 180.02562 * 7 6 5 29 29 H 1.09008 * 109.47290 * 210.00450 * 9 8 7 30 30 H 1.09004 * 109.47367 * 329.99470 * 9 8 7 31 31 H 0.96997 * 120.00071 * 180.02562 * 13 12 10 32 32 H 1.08004 * 120.20509 * 180.02562 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8639 1.8979 0.9019 5 6 3.0876 3.2201 0.5662 6 6 3.8619 4.2673 1.1102 7 6 3.8505 5.4861 0.5148 8 6 3.0893 5.7380 -0.6290 9 6 3.1204 7.1145 -1.2413 10 6 4.2278 7.1860 -2.2610 11 1 4.8474 6.3212 -2.4466 12 6 4.4505 8.3557 -2.9560 13 7 3.6963 9.4090 -2.7295 14 14 5.8237 8.4445 -4.2194 15 1 6.5209 7.1350 -4.2854 16 1 5.2513 8.7687 -5.5506 17 1 6.7907 9.5005 -3.8259 18 6 2.3231 4.7777 -1.2037 19 6 2.2857 3.4846 -0.6387 20 7 1.6656 2.3579 -0.9383 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.2959 1.3735 1.7414 27 1 4.4594 4.0992 1.9939 28 1 4.4457 6.2827 0.9362 29 1 2.1658 7.3179 -1.7268 30 1 3.2963 7.8554 -0.4613 31 1 3.8528 10.2318 -3.2188 32 1 1.7450 5.0009 -2.0883 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261110437.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:46 Heat of formation + Delta-G solvation = 82.360111 kcal Electronic energy + Delta-G solvation = -14937.634622 eV Core-core repulsion = 12478.375254 eV Total energy + Delta-G solvation = -2459.259369 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.82907 -37.24917 -34.06808 -32.83424 -31.52375 -30.08622 -28.17382 -27.21067 -24.43655 -22.64142 -21.82933 -20.42745 -19.72708 -16.78857 -16.41156 -16.22591 -15.35790 -14.91409 -14.23240 -14.08420 -13.85634 -13.32421 -12.82713 -12.44166 -12.34843 -12.12145 -11.69740 -11.41759 -11.25098 -11.02645 -10.68731 -10.51128 -10.50045 -9.80060 -9.76265 -9.46146 -9.30325 -8.37189 -7.76632 -7.02533 -5.98861 -4.02041 1.16354 2.50798 2.58172 2.94973 3.33794 3.41231 3.47058 4.33645 4.44210 4.63621 4.70976 4.78125 4.95659 5.08499 5.32311 5.36139 5.52026 5.56174 5.75052 5.92673 5.96674 6.00521 6.29133 6.58376 6.77526 7.06504 7.16812 7.20457 7.31181 7.54544 7.67799 7.92210 7.97672 8.14687 8.38085 9.03535 9.61435 11.11093 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043967 B = 0.005383 C = 0.005217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.693618 B = 5200.769591 C = 5365.732701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.125 3.875 3 N -0.335 5.335 4 C 0.056 3.944 5 C -0.207 4.207 6 C -0.072 4.072 7 C -0.124 4.124 8 C 0.001 3.999 9 C 0.046 3.954 10 C -0.508 4.508 11 H 0.058 0.942 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.894 3.106 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.130 4.130 19 C 0.115 3.885 20 N -0.321 5.321 21 H 0.073 0.927 22 H 0.060 0.940 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.175 0.825 27 H 0.114 0.886 28 H 0.120 0.880 29 H 0.031 0.969 30 H 0.031 0.969 31 H 0.261 0.739 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.805 -16.789 8.653 19.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.003 3.997 3 N -0.111 5.111 4 C -0.098 4.098 5 C -0.217 4.217 6 C -0.092 4.092 7 C -0.143 4.143 8 C -0.003 4.003 9 C 0.009 3.991 10 C -0.547 4.547 11 H 0.077 0.923 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.722 3.278 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.151 4.151 19 C -0.037 4.037 20 N -0.149 5.149 21 H 0.092 0.908 22 H 0.079 0.921 23 H 0.092 0.908 24 H 0.105 0.895 25 H 0.113 0.887 26 H 0.192 0.808 27 H 0.132 0.868 28 H 0.138 0.862 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.727 -17.388 7.754 19.400 hybrid contribution 1.358 0.398 -0.130 1.421 sum -2.369 -16.990 7.625 18.772 Atomic orbital electron populations 1.22040 0.93581 1.02647 1.03948 1.21747 0.96384 0.77778 1.03749 1.48570 1.32598 1.10252 1.19639 1.22417 0.96702 0.94380 0.96295 1.19596 1.07258 0.93888 1.00958 1.20112 0.98164 0.91804 0.99153 1.20667 1.00366 0.96635 0.96668 1.20174 0.90293 0.97996 0.91868 1.18438 0.98151 0.86806 0.95736 1.21102 1.15341 0.97653 1.20560 0.92341 1.24999 0.96486 0.95658 0.97181 1.69968 1.39106 1.02314 1.42006 0.86490 0.81991 0.78072 0.81242 1.19675 1.20978 1.20978 1.19696 1.04965 0.88504 1.01951 1.21089 0.94594 0.93597 0.94427 1.77615 1.26900 0.97120 1.13269 0.90828 0.92069 0.90762 0.89526 0.88716 0.80761 0.86791 0.86154 0.95113 0.95065 0.92947 0.85942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 10.06 37.16 0.37 -1.04 16 2 C 0.12 1.12 7.17 -4.04 -0.03 1.10 16 3 N -0.33 -4.80 3.63 -60.82 -0.22 -5.02 16 4 C 0.06 0.78 11.45 -16.61 -0.19 0.59 16 5 C -0.21 -3.67 6.33 -105.19 -0.67 -4.33 16 6 C -0.07 -1.24 10.09 -39.41 -0.40 -1.64 16 7 C -0.12 -2.46 9.51 -39.97 -0.38 -2.84 16 8 C 0.00 0.03 5.03 -105.02 -0.53 -0.50 16 9 C 0.05 1.19 5.05 -29.04 -0.15 1.05 16 10 C -0.51 -14.47 9.09 -34.44 -0.31 -14.78 16 11 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 14 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 15 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 C -0.13 -2.88 9.65 -39.41 -0.38 -3.26 16 19 C 0.12 2.36 7.49 -83.05 -0.62 1.74 16 20 N -0.32 -6.07 12.34 33.25 0.41 -5.66 16 21 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.07 0.81 8.13 -51.93 -0.42 0.38 16 24 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.09 0.53 8.04 -51.93 -0.42 0.11 16 26 H 0.18 1.55 8.06 -52.49 -0.42 1.12 16 27 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 28 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 29 H 0.03 0.84 8.06 -51.92 -0.42 0.43 16 30 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.12 2.72 8.06 -52.48 -0.42 2.30 16 LS Contribution 281.50 15.07 4.24 4.24 Total: -1.00 -33.15 281.50 -7.41 -40.56 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -4.18 Total: -2.66 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -3.38 Total: -22.36 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.93 Total: -36.62 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -33.15 -7.41 -40.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261110437.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.919 kcal (2) G-P(sol) polarization free energy of solvation -33.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds