Wall clock time and date at job start Mon Mar 30 2020 03:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 C 1.33987 * 125.02244 * 124.71790 * 3 2 1 5 5 C 1.38239 * 107.90574 * 179.89855 * 4 3 2 6 6 C 1.41134 * 134.81593 * 180.11917 * 5 4 3 7 7 C 1.35652 * 119.53298 * 180.25934 * 6 5 4 8 8 C 1.39681 * 121.73081 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.09336 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47562 * 90.00211 * 9 8 7 11 11 H 1.08001 * 119.99787 * 359.97438 * 10 9 8 12 12 C 1.37872 * 120.00261 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00116 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00251 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46896 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47434 * 119.99729 * 14 12 10 17 17 H 1.48500 * 109.46814 * 239.99698 * 14 12 10 18 18 C 1.35633 * 121.81493 * 359.96978 * 8 7 6 19 19 C 1.41155 * 119.59943 * 0.02562 * 18 8 7 20 20 N 1.32055 * 134.68552 * 180.02562 * 19 18 8 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99854 * 1 2 3 23 23 H 1.08996 * 109.46952 * 59.99873 * 1 2 3 24 24 H 1.09001 * 109.47289 * 239.99872 * 2 1 3 25 25 H 1.09004 * 109.47261 * 120.00128 * 2 1 3 26 26 H 1.08000 * 126.04583 * 0.02562 * 4 3 2 27 27 H 1.07994 * 120.23146 * 0.28554 * 6 5 4 28 28 H 1.08001 * 119.13696 * 180.02562 * 7 6 5 29 29 H 1.09008 * 109.47290 * 210.00450 * 9 8 7 30 30 H 1.09004 * 109.47367 * 329.99470 * 9 8 7 31 31 H 0.96997 * 120.00071 * 180.02562 * 13 12 10 32 32 H 1.08004 * 120.20509 * 180.02562 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8639 1.8979 0.9019 5 6 3.0876 3.2201 0.5662 6 6 3.8619 4.2673 1.1102 7 6 3.8505 5.4861 0.5148 8 6 3.0893 5.7380 -0.6290 9 6 3.1204 7.1145 -1.2413 10 6 4.2278 7.1860 -2.2610 11 1 4.8474 6.3212 -2.4466 12 6 4.4505 8.3557 -2.9560 13 7 3.6963 9.4090 -2.7295 14 14 5.8237 8.4445 -4.2194 15 1 6.5209 7.1350 -4.2854 16 1 5.2513 8.7687 -5.5506 17 1 6.7907 9.5005 -3.8259 18 6 2.3231 4.7777 -1.2037 19 6 2.2857 3.4846 -0.6387 20 7 1.6656 2.3579 -0.9383 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.2959 1.3735 1.7414 27 1 4.4594 4.0992 1.9939 28 1 4.4457 6.2827 0.9362 29 1 2.1658 7.3179 -1.7268 30 1 3.2963 7.8554 -0.4613 31 1 3.8528 10.2318 -3.2188 32 1 1.7450 5.0009 -2.0883 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261110437.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:46 Heat of formation + Delta-G solvation = 61.676335 kcal Electronic energy + Delta-G solvation = -14938.531538 eV Core-core repulsion = 12478.375254 eV Total energy + Delta-G solvation = -2460.156284 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.10896 -38.71443 -35.50655 -34.50863 -33.04895 -31.51032 -29.53502 -28.92091 -25.99760 -24.19278 -23.03179 -21.87616 -21.09254 -18.50396 -17.91966 -17.70745 -16.71875 -16.39305 -15.87853 -15.34798 -15.01062 -14.67855 -14.45795 -13.92375 -13.68702 -13.25043 -13.07771 -12.95107 -12.80566 -12.54163 -12.40267 -12.26897 -12.01234 -11.55176 -11.37600 -11.09505 -11.02634 -10.59849 -9.25052 -8.46428 -8.18469 -6.32283 -0.15648 1.00801 1.39700 1.40378 1.54175 1.57749 1.60096 2.41116 3.06129 3.11242 3.29769 3.80456 4.03842 4.08307 4.23843 4.34653 4.37823 4.49188 4.58345 4.73643 4.82529 4.83148 5.02728 5.21334 5.25535 5.33392 5.41829 5.62404 5.69162 5.77246 6.03951 6.14107 6.14823 6.24450 6.77095 6.80499 7.35767 8.90682 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043967 B = 0.005383 C = 0.005217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.693618 B = 5200.769591 C = 5365.732701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.111 3.889 3 N -0.324 5.324 4 C 0.104 3.896 5 C -0.244 4.244 6 C -0.028 4.028 7 C -0.170 4.170 8 C -0.010 4.010 9 C 0.054 3.946 10 C -0.527 4.527 11 H 0.052 0.948 12 C 0.005 3.995 13 N -0.930 5.930 14 Si 0.967 3.033 15 H -0.267 1.267 16 H -0.277 1.277 17 H -0.271 1.271 18 C -0.157 4.157 19 C 0.088 3.912 20 N -0.362 5.362 21 H 0.107 0.893 22 H 0.055 0.945 23 H 0.041 0.959 24 H 0.096 0.904 25 H 0.148 0.852 26 H 0.242 0.758 27 H 0.164 0.836 28 H 0.122 0.878 29 H -0.001 1.001 30 H 0.013 0.987 31 H 0.266 0.734 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.216 -20.445 10.630 23.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.008 4.008 3 N -0.098 5.098 4 C -0.053 4.053 5 C -0.253 4.253 6 C -0.048 4.048 7 C -0.190 4.190 8 C -0.014 4.014 9 C 0.017 3.983 10 C -0.565 4.565 11 H 0.070 0.930 12 C -0.193 4.193 13 N -0.570 5.570 14 Si 0.791 3.209 15 H -0.191 1.191 16 H -0.203 1.203 17 H -0.196 1.196 18 C -0.178 4.178 19 C -0.063 4.063 20 N -0.191 5.191 21 H 0.126 0.874 22 H 0.074 0.926 23 H 0.060 0.940 24 H 0.114 0.886 25 H 0.165 0.835 26 H 0.258 0.742 27 H 0.181 0.819 28 H 0.140 0.860 29 H 0.017 0.983 30 H 0.031 0.969 31 H 0.075 0.925 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.165 -21.060 9.716 23.293 hybrid contribution 0.754 1.255 -0.645 1.600 sum -1.410 -19.805 9.070 21.829 Atomic orbital electron populations 1.22021 0.93580 1.04271 1.02047 1.22370 0.96503 0.75070 1.06820 1.49137 1.31301 1.11256 1.18133 1.23389 0.93422 0.92582 0.95931 1.20020 1.08350 0.96177 1.00779 1.20525 0.95669 0.89873 0.98726 1.20601 1.02498 0.98706 0.97182 1.19888 0.92096 0.95949 0.93513 1.18193 0.96027 0.89198 0.94864 1.21360 1.15886 0.97720 1.21503 0.92969 1.25924 0.99088 0.95080 0.99224 1.70089 1.40782 1.02966 1.43167 0.85364 0.78741 0.78406 0.78343 1.19149 1.20271 1.19633 1.19493 1.05852 0.90448 1.02018 1.20993 0.96120 0.93173 0.96055 1.77562 1.28190 0.97730 1.15625 0.87433 0.92634 0.94014 0.88572 0.83455 0.74161 0.81864 0.85985 0.98305 0.96882 0.92509 0.88591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 10.06 71.98 0.72 -1.55 16 2 C 0.11 1.45 7.17 86.38 0.62 2.07 16 3 N -0.32 -8.06 3.63 -346.33 -1.26 -9.32 16 4 C 0.10 2.27 11.45 84.36 0.97 3.23 16 5 C -0.24 -7.97 6.33 -20.23 -0.13 -8.10 16 6 C -0.03 -0.89 10.09 22.38 0.23 -0.67 16 7 C -0.17 -6.92 9.51 22.02 0.21 -6.71 16 8 C -0.01 -0.50 5.03 -20.12 -0.10 -0.60 16 9 C 0.05 3.09 5.05 29.10 0.15 3.24 16 10 C -0.53 -31.70 9.09 25.60 0.23 -31.46 16 11 H 0.05 3.13 7.74 -2.91 -0.02 3.10 16 12 C 0.00 0.29 5.46 84.65 0.46 0.75 16 13 N -0.93 -57.72 13.29 21.45 0.28 -57.43 16 14 Si 0.97 45.90 29.54 68.60 2.03 47.92 16 15 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 16 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 17 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 18 C -0.16 -7.51 9.65 22.38 0.22 -7.30 16 19 C 0.09 3.66 7.49 42.16 0.32 3.98 16 20 N -0.36 -13.59 12.34 -48.70 -0.60 -14.19 16 21 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 22 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 23 H 0.04 0.87 8.13 -2.39 -0.02 0.85 16 24 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.15 0.50 8.04 -2.38 -0.02 0.48 16 26 H 0.24 1.99 8.06 -2.91 -0.02 1.96 16 27 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 28 H 0.12 4.74 8.06 -2.91 -0.02 4.71 16 29 H 0.00 -0.08 8.06 -2.38 -0.02 -0.10 16 30 H 0.01 0.76 8.07 -2.38 -0.02 0.74 16 31 H 0.27 15.36 8.31 -92.71 -0.77 14.58 16 32 H 0.10 4.85 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -79.45 281.50 5.44 -74.01 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: 1.10 Total: 2.13 kcal Atomic # 6 Polarization: -47.01 SS G_CDS: 3.89 Total: -43.13 kcal Atomic # 7 Polarization: -79.37 SS G_CDS: -1.57 Total: -80.94 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.92 kcal Total: -79.45 5.44 -74.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261110437.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.688 kcal (2) G-P(sol) polarization free energy of solvation -79.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds