Wall clock time and date at job start Mon Mar 30 2020 03:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46908 * 2 1 4 4 N 1.39869 * 125.46633 * 269.98026 * 3 2 1 5 5 C 1.30242 * 110.08470 * 180.02562 * 4 3 2 6 6 C 1.45926 * 107.78648 * 0.02562 * 5 4 3 7 7 C 1.39945 * 134.02635 * 180.02562 * 6 5 4 8 8 C 1.36469 * 119.63385 * 179.97438 * 7 6 5 9 9 C 1.38962 * 120.62766 * 0.02562 * 8 7 6 10 10 C 1.50697 * 119.59286 * 179.97438 * 9 8 7 11 11 C 1.50707 * 109.47076 * 269.97854 * 10 9 8 12 12 H 1.08001 * 119.99615 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00084 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00147 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00028 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.46901 * 90.00360 * 15 13 11 17 17 H 1.48501 * 109.47399 * 210.00560 * 15 13 11 18 18 H 1.48501 * 109.47007 * 330.00858 * 15 13 11 19 19 C 1.36591 * 120.81432 * 359.97355 * 9 8 7 20 20 C 1.37039 * 125.45568 * 90.00057 * 3 2 1 21 21 H 1.08994 * 109.47688 * 59.99717 * 1 2 3 22 22 H 1.09003 * 109.46663 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46973 * 299.99045 * 1 2 3 24 24 H 1.09003 * 109.46973 * 240.00955 * 2 1 3 25 25 H 1.08994 * 109.47688 * 120.00283 * 2 1 3 26 26 H 1.08006 * 126.10211 * 180.25921 * 5 4 3 27 27 H 1.08001 * 120.18344 * 359.94740 * 7 6 5 28 28 H 1.07997 * 119.68130 * 179.97438 * 8 7 6 29 29 H 1.08996 * 109.46975 * 29.97257 * 10 9 8 30 30 H 1.08998 * 109.47314 * 149.97705 * 10 9 8 31 31 H 0.97000 * 120.00488 * 179.97438 * 14 13 11 32 32 H 1.08004 * 120.07009 * 180.02562 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2892 2.1463 -1.1392 5 6 2.7081 3.3301 -0.7937 6 6 2.7290 3.3877 0.6643 7 6 3.0778 4.3739 1.5938 8 6 2.9833 4.1067 2.9287 9 6 2.5449 2.8651 3.3729 10 6 2.4500 2.5950 4.8524 11 6 3.7579 2.0311 5.3450 12 1 4.5758 1.8828 4.6554 13 6 3.9100 1.7036 6.6756 14 7 5.0515 1.2120 7.1055 15 14 2.4950 1.9594 7.8680 16 1 1.6613 0.7315 7.9176 17 1 3.0341 2.2467 9.2216 18 1 1.6647 3.1034 7.4128 19 6 2.1988 1.8866 2.4850 20 6 2.2833 2.1307 1.1163 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8901 24 1 1.8933 -0.5137 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 2.9864 4.1280 -1.4663 27 1 3.4203 5.3411 1.2566 28 1 3.2527 4.8671 3.6467 29 1 2.2343 3.5249 5.3784 30 1 1.6513 1.8775 5.0403 31 1 5.1586 0.9819 8.0418 32 1 1.8592 0.9260 2.8434 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261112588.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:49 Heat of formation + Delta-G solvation = 57.212106 kcal Electronic energy + Delta-G solvation = -15219.830097 eV Core-core repulsion = 12759.480229 eV Total energy + Delta-G solvation = -2460.349868 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.13163 -38.61677 -35.53465 -34.97610 -32.78395 -31.89834 -29.59834 -29.06646 -25.02027 -24.69770 -23.29890 -21.98945 -21.04791 -18.96847 -17.96246 -17.63575 -16.43207 -16.16948 -15.91861 -15.51469 -15.19697 -14.67933 -14.46966 -14.17739 -13.79979 -13.47529 -13.39626 -13.06614 -12.67568 -12.49466 -12.25492 -12.08251 -11.81888 -11.74753 -11.60977 -11.51658 -10.92898 -10.78290 -9.29983 -8.75042 -8.29255 -6.34868 0.12095 0.66722 1.38017 1.39875 1.49951 1.51875 1.63707 2.36189 2.95075 3.05215 3.54751 3.69114 3.91508 4.11144 4.15802 4.18723 4.33096 4.44158 4.50364 4.74390 4.80265 4.82290 5.00844 5.02959 5.09223 5.14802 5.23999 5.52243 5.57631 5.63216 5.96424 6.01872 6.16677 6.28112 6.70622 6.73012 7.28539 8.87317 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.031611 B = 0.006831 C = 0.006153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.564441 B = 4097.851754 C = 4549.268482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.128 3.872 3 N -0.417 5.417 4 N -0.284 5.284 5 C 0.084 3.916 6 C -0.215 4.215 7 C -0.033 4.033 8 C -0.170 4.170 9 C -0.008 4.008 10 C 0.020 3.980 11 C -0.519 4.519 12 H 0.026 0.974 13 C 0.009 3.991 14 N -0.949 5.949 15 Si 0.950 3.050 16 H -0.266 1.266 17 H -0.283 1.283 18 H -0.242 1.242 19 C -0.163 4.163 20 C 0.116 3.884 21 H 0.057 0.943 22 H 0.100 0.900 23 H 0.046 0.954 24 H 0.104 0.896 25 H 0.089 0.911 26 H 0.235 0.765 27 H 0.162 0.838 28 H 0.131 0.869 29 H 0.039 0.961 30 H 0.030 0.970 31 H 0.268 0.732 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.363 3.150 -13.595 16.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.007 3.993 3 N -0.206 5.206 4 N -0.095 5.095 5 C -0.113 4.113 6 C -0.223 4.223 7 C -0.053 4.053 8 C -0.189 4.189 9 C -0.010 4.010 10 C -0.017 4.017 11 C -0.557 4.557 12 H 0.045 0.955 13 C -0.188 4.188 14 N -0.590 5.590 15 Si 0.773 3.227 16 H -0.191 1.191 17 H -0.208 1.208 18 H -0.165 1.165 19 C -0.185 4.185 20 C 0.002 3.998 21 H 0.076 0.924 22 H 0.119 0.881 23 H 0.065 0.935 24 H 0.122 0.878 25 H 0.107 0.893 26 H 0.252 0.748 27 H 0.180 0.820 28 H 0.148 0.852 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.620 2.106 -14.462 17.496 hybrid contribution 0.184 0.082 1.612 1.625 sum -9.436 2.188 -12.850 16.091 Atomic orbital electron populations 1.22131 0.93646 1.04084 1.01955 1.21782 0.95858 0.76987 1.04651 1.48551 1.58639 1.12904 1.00547 1.76421 1.18230 1.05258 1.09617 1.25629 0.97619 0.95526 0.92576 1.20234 1.12203 0.95350 0.94521 1.20594 0.95224 0.98608 0.90839 1.20805 1.04425 0.97243 0.96424 1.19762 0.92184 0.93221 0.95877 1.18714 0.95919 0.97436 0.89670 1.21107 0.98183 1.42247 0.94198 0.95520 1.25971 0.98633 0.94013 1.00199 1.70056 1.27075 1.45248 1.16576 0.85661 0.79258 0.80214 0.77591 1.19133 1.20846 1.16541 1.19613 1.09560 1.00458 0.88919 1.18957 0.98603 0.92800 0.89429 0.92391 0.88132 0.93485 0.87768 0.89301 0.74848 0.82049 0.85154 0.94230 0.95158 0.92335 0.86678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 10.24 71.98 0.74 -2.55 16 2 C 0.13 3.12 7.09 86.38 0.61 3.73 16 3 N -0.42 -13.23 3.65 -339.64 -1.24 -14.47 16 4 N -0.28 -8.51 12.40 -53.09 -0.66 -9.17 16 5 C 0.08 2.18 12.28 86.92 1.07 3.24 16 6 C -0.22 -6.92 6.37 -20.24 -0.13 -7.05 16 7 C -0.03 -0.99 10.07 22.27 0.22 -0.77 16 8 C -0.17 -6.21 9.60 22.03 0.21 -6.00 16 9 C -0.01 -0.33 5.04 -20.08 -0.10 -0.43 16 10 C 0.02 0.93 4.14 29.10 0.12 1.05 16 11 C -0.52 -29.99 9.65 25.60 0.25 -29.74 16 12 H 0.03 1.73 7.98 -2.91 -0.02 1.71 16 13 C 0.01 0.52 5.47 84.65 0.46 0.98 16 14 N -0.95 -59.30 13.96 21.45 0.30 -59.00 16 15 Si 0.95 43.22 27.47 68.60 1.88 45.10 16 16 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 17 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 18 H -0.24 -10.09 6.54 99.48 0.65 -9.44 16 19 C -0.16 -6.51 9.58 22.14 0.21 -6.29 16 20 C 0.12 4.20 6.87 39.21 0.27 4.47 16 21 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 22 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.09 2.16 8.14 -2.39 -0.02 2.15 16 26 H 0.24 3.61 8.06 -2.91 -0.02 3.58 16 27 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 28 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 29 H 0.04 1.78 7.14 -2.39 -0.02 1.76 16 30 H 0.03 1.37 7.50 -2.39 -0.02 1.35 16 31 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 32 H 0.12 4.48 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -70.87 278.48 5.27 -65.60 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 1.05 Total: 11.28 kcal Atomic # 6 Polarization: -43.28 SS G_CDS: 3.93 Total: -39.35 kcal Atomic # 7 Polarization: -81.04 SS G_CDS: -1.60 Total: -82.64 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.88 Total: 45.10 kcal Total: -70.87 5.27 -65.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261112588.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.815 kcal (2) G-P(sol) polarization free energy of solvation -70.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds