Wall clock time and date at job start Mon Mar 30 2020 03:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46494 * 120.00123 * 2 1 4 4 C 1.50700 * 109.47222 * 269.99869 * 3 2 1 5 5 H 1.08003 * 120.00146 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00030 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00276 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 120.00053 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46693 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47328 * 120.00016 * 8 6 4 11 11 H 1.48506 * 109.46878 * 240.00110 * 8 6 4 12 12 C 1.39964 * 119.99590 * 179.97438 * 2 1 3 13 13 C 1.39427 * 119.88347 * 180.02562 * 12 2 1 14 14 C 1.37656 * 120.60210 * 179.97438 * 13 12 2 15 15 C 1.39118 * 120.02019 * 359.97438 * 14 13 12 16 16 N 1.37949 * 133.32661 * 180.02562 * 15 14 13 17 17 H 0.97001 * 125.07713 * 359.97438 * 16 15 14 18 18 C 1.36794 * 109.83916 * 180.26416 * 16 15 14 19 19 C 1.34240 * 109.94082 * 359.54218 * 18 16 15 20 20 C 1.40608 * 119.55578 * 0.02562 * 15 14 13 21 21 C 1.38210 * 119.88935 * 0.02562 * 12 2 1 22 22 H 1.08998 * 109.47635 * 270.00347 * 1 2 3 23 23 H 1.08998 * 109.46897 * 30.00275 * 1 2 3 24 24 H 1.09003 * 109.47089 * 149.99708 * 1 2 3 25 25 H 1.09007 * 109.47492 * 29.99955 * 3 2 1 26 26 H 1.09000 * 109.47346 * 149.99805 * 3 2 1 27 27 H 0.97001 * 120.00051 * 180.02562 * 7 6 4 28 28 H 1.07998 * 119.69572 * 359.97438 * 13 12 2 29 29 H 1.07995 * 119.98822 * 179.97438 * 14 13 12 30 30 H 1.08005 * 125.02431 * 179.73316 * 18 16 15 31 31 H 1.08005 * 126.48581 * 180.17165 * 19 18 16 32 32 H 1.07998 * 120.20658 * 0.02562 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0982 1.0957 -2.2417 6 6 3.1261 2.8779 -1.6727 7 7 3.5534 3.6180 -0.6731 8 14 3.4369 3.4175 -3.4339 9 1 2.8600 2.4168 -4.3673 10 1 2.7989 4.7380 -3.6670 11 1 4.8994 3.5262 -3.6675 12 6 2.1648 -1.2122 0.0005 13 6 3.5590 -1.2094 0.0011 14 6 4.2621 -2.3929 0.0021 15 6 3.5820 -3.6065 0.0032 16 7 3.9948 -4.9228 0.0049 17 1 4.9190 -5.2172 0.0052 18 6 2.9058 -5.7508 -0.0006 19 6 1.7776 -5.0234 0.0043 20 6 2.1760 -3.6136 0.0027 21 6 1.4713 -2.4077 0.0005 22 1 -0.3634 0.0001 1.0276 23 1 -0.3633 0.8900 -0.5139 24 1 -0.3633 -0.8900 -0.5139 25 1 1.6085 2.0284 0.5138 26 1 3.1499 1.1384 0.5139 27 1 4.0296 4.4443 -0.8504 28 1 4.0922 -0.2702 0.0007 29 1 5.3420 -2.3792 0.0021 30 1 2.9478 -6.8300 -0.0048 31 1 0.7673 -5.4052 0.0044 32 1 0.3913 -2.4095 -0.0003 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261114021.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:52 Heat of formation + Delta-G solvation = 67.091275 kcal Electronic energy + Delta-G solvation = -15289.517026 eV Core-core repulsion = 12829.595551 eV Total energy + Delta-G solvation = -2459.921475 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.57064 -37.57451 -34.35396 -32.58344 -31.29532 -28.71466 -28.24903 -27.28815 -24.82225 -22.49171 -21.70050 -20.38965 -19.48613 -17.52464 -16.45625 -15.79428 -15.50209 -14.72730 -14.05125 -13.96014 -13.50996 -13.38665 -12.92658 -12.47379 -12.20305 -12.15441 -11.72195 -11.34228 -11.17909 -11.10808 -10.80925 -10.63362 -10.19573 -9.82167 -9.61688 -9.20911 -8.47863 -8.37690 -7.33222 -6.28114 -5.88807 -4.13431 1.72623 2.50538 3.17508 3.27277 3.35335 3.40932 3.57756 4.24905 4.45641 4.65908 5.15124 5.25038 5.34615 5.65666 5.82286 5.87795 6.07737 6.09503 6.18511 6.26687 6.40040 6.50545 6.67741 6.85434 7.02302 7.22557 7.25477 7.34393 7.39368 7.68051 7.85550 7.98073 8.21674 8.37940 8.60693 8.97492 9.53571 10.99067 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.035646 B = 0.006552 C = 0.006061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.319421 B = 4272.541246 C = 4618.520621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.620 5.620 3 C 0.250 3.750 4 C -0.529 4.529 5 H 0.060 0.940 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.221 3.779 13 C -0.144 4.144 14 C -0.094 4.094 15 C 0.028 3.972 16 N -0.602 5.602 17 H 0.407 0.593 18 C 0.044 3.956 19 C -0.223 4.223 20 C -0.059 4.059 21 C -0.196 4.196 22 H 0.033 0.967 23 H 0.064 0.936 24 H 0.054 0.946 25 H 0.029 0.971 26 H 0.034 0.966 27 H 0.263 0.737 28 H 0.138 0.862 29 H 0.112 0.888 30 H 0.160 0.840 31 H 0.136 0.864 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.020 -14.029 2.010 14.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.328 5.328 3 C 0.130 3.870 4 C -0.568 4.568 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.536 5.536 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.115 3.885 13 C -0.166 4.166 14 C -0.115 4.115 15 C -0.077 4.077 16 N -0.206 5.206 17 H 0.242 0.758 18 C -0.084 4.084 19 C -0.250 4.250 20 C -0.064 4.064 21 C -0.221 4.221 22 H 0.052 0.948 23 H 0.083 0.917 24 H 0.072 0.928 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.156 0.844 29 H 0.130 0.870 30 H 0.177 0.823 31 H 0.154 0.846 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.918 -13.661 2.057 13.845 hybrid contribution 0.626 0.265 -1.045 1.246 sum -0.292 -13.396 1.012 13.437 Atomic orbital electron populations 1.21422 0.81617 1.01743 0.99494 1.46983 1.04149 1.04190 1.77517 1.19243 0.92021 0.78952 0.96777 1.21677 1.35994 1.06247 0.92879 0.92179 1.24966 0.95526 0.96338 0.97301 1.69944 1.38609 1.14355 1.30645 0.86491 0.77974 0.78463 0.84843 1.19732 1.20971 1.20916 1.17647 0.91057 0.85950 0.93838 1.20727 0.92725 0.97908 1.05251 1.19742 0.98339 0.89221 1.04178 1.18061 0.93866 0.84499 1.11312 1.41631 1.07722 1.04364 1.66888 0.75776 1.21586 0.86282 0.95504 1.05004 1.21543 0.97473 0.91363 1.14605 1.18808 0.91719 0.92739 1.03116 1.19774 0.98511 0.89348 1.14492 0.94845 0.91675 0.92760 0.95252 0.94789 0.92769 0.84446 0.87020 0.82315 0.84626 0.86779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.86 10.18 59.85 0.61 2.47 16 2 N -0.62 -13.73 3.00 -180.96 -0.54 -14.27 16 3 C 0.25 6.36 4.91 -5.20 -0.03 6.33 16 4 C -0.53 -14.59 9.39 -34.44 -0.32 -14.91 16 5 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 6 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 7 N -0.90 -25.82 13.29 55.43 0.74 -25.09 16 8 Si 0.89 21.45 29.54 -169.99 -5.02 16.42 16 9 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.22 4.68 6.55 -83.71 -0.55 4.14 16 13 C -0.14 -2.99 9.18 -39.35 -0.36 -3.35 16 14 C -0.09 -1.68 10.06 -39.47 -0.40 -2.08 16 15 C 0.03 0.48 7.27 -83.89 -0.61 -0.13 16 16 N -0.60 -8.00 6.08 -10.61 -0.06 -8.07 16 17 H 0.41 4.02 8.96 -40.82 -0.37 3.66 16 18 C 0.04 0.54 11.81 -16.75 -0.20 0.34 16 19 C -0.22 -3.29 11.08 -37.67 -0.42 -3.71 16 20 C -0.06 -1.07 6.37 -105.14 -0.67 -1.74 16 21 C -0.20 -3.77 9.26 -39.06 -0.36 -4.13 16 22 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 1.21 8.07 -51.93 -0.42 0.79 16 24 H 0.05 0.90 6.19 -51.93 -0.32 0.58 16 25 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 26 H 0.03 0.91 6.18 -51.93 -0.32 0.58 16 27 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.14 3.06 6.11 -52.49 -0.32 2.74 16 29 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.16 1.28 8.06 -52.48 -0.42 0.86 16 31 H 0.14 1.70 8.06 -52.48 -0.42 1.28 16 32 H 0.11 2.01 6.12 -52.49 -0.32 1.69 16 LS Contribution 272.90 15.07 4.11 4.11 Total: -1.00 -30.88 272.90 -7.90 -38.79 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -3.72 Total: 3.29 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -3.40 Total: -15.19 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: 0.13 Total: -47.42 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.88 -7.90 -38.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261114021.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.878 kcal (2) G-P(sol) polarization free energy of solvation -30.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds