Wall clock time and date at job start Mon Mar 30 2020 03:08:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46504 * 1
3 3 C 1.46494 * 120.00123 * 2 1
4 4 C 1.50700 * 109.47222 * 269.99869 * 3 2 1
5 5 H 1.08003 * 120.00146 * 359.97438 * 4 3 2
6 6 C 1.37874 * 120.00030 * 179.97438 * 4 3 2
7 7 N 1.31516 * 120.00276 * 0.02562 * 6 4 3
8 8 Si 1.86806 * 120.00053 * 180.02562 * 6 4 3
9 9 H 1.48500 * 109.46693 * 359.97438 * 8 6 4
10 10 H 1.48497 * 109.47328 * 120.00016 * 8 6 4
11 11 H 1.48506 * 109.46878 * 240.00110 * 8 6 4
12 12 C 1.39964 * 119.99590 * 179.97438 * 2 1 3
13 13 C 1.39427 * 119.88347 * 180.02562 * 12 2 1
14 14 C 1.37656 * 120.60210 * 179.97438 * 13 12 2
15 15 C 1.39118 * 120.02019 * 359.97438 * 14 13 12
16 16 N 1.37949 * 133.32661 * 180.02562 * 15 14 13
17 17 H 0.97001 * 125.07713 * 359.97438 * 16 15 14
18 18 C 1.36794 * 109.83916 * 180.26416 * 16 15 14
19 19 C 1.34240 * 109.94082 * 359.54218 * 18 16 15
20 20 C 1.40608 * 119.55578 * 0.02562 * 15 14 13
21 21 C 1.38210 * 119.88935 * 0.02562 * 12 2 1
22 22 H 1.08998 * 109.47635 * 270.00347 * 1 2 3
23 23 H 1.08998 * 109.46897 * 30.00275 * 1 2 3
24 24 H 1.09003 * 109.47089 * 149.99708 * 1 2 3
25 25 H 1.09007 * 109.47492 * 29.99955 * 3 2 1
26 26 H 1.09000 * 109.47346 * 149.99805 * 3 2 1
27 27 H 0.97001 * 120.00051 * 180.02562 * 7 6 4
28 28 H 1.07998 * 119.69572 * 359.97438 * 13 12 2
29 29 H 1.07995 * 119.98822 * 179.97438 * 14 13 12
30 30 H 1.08005 * 125.02431 * 179.73316 * 18 16 15
31 31 H 1.08005 * 126.48581 * 180.17165 * 19 18 16
32 32 H 1.07998 * 120.20658 * 0.02562 * 21 12 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4488 1.7037 -1.4208
5 1 2.0982 1.0957 -2.2417
6 6 3.1261 2.8779 -1.6727
7 7 3.5534 3.6180 -0.6731
8 14 3.4369 3.4175 -3.4339
9 1 2.8600 2.4168 -4.3673
10 1 2.7989 4.7380 -3.6670
11 1 4.8994 3.5262 -3.6675
12 6 2.1648 -1.2122 0.0005
13 6 3.5590 -1.2094 0.0011
14 6 4.2621 -2.3929 0.0021
15 6 3.5820 -3.6065 0.0032
16 7 3.9948 -4.9228 0.0049
17 1 4.9190 -5.2172 0.0052
18 6 2.9058 -5.7508 -0.0006
19 6 1.7776 -5.0234 0.0043
20 6 2.1760 -3.6136 0.0027
21 6 1.4713 -2.4077 0.0005
22 1 -0.3634 0.0001 1.0276
23 1 -0.3633 0.8900 -0.5139
24 1 -0.3633 -0.8900 -0.5139
25 1 1.6085 2.0284 0.5138
26 1 3.1499 1.1384 0.5139
27 1 4.0296 4.4443 -0.8504
28 1 4.0922 -0.2702 0.0007
29 1 5.3420 -2.3792 0.0021
30 1 2.9478 -6.8300 -0.0048
31 1 0.7673 -5.4052 0.0044
32 1 0.3913 -2.4095 -0.0003
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261114021.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:08:52
Heat of formation + Delta-G solvation = 67.091275 kcal
Electronic energy + Delta-G solvation = -15289.517026 eV
Core-core repulsion = 12829.595551 eV
Total energy + Delta-G solvation = -2459.921475 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 230.111 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-40.57064 -37.57451 -34.35396 -32.58344 -31.29532 -28.71466 -28.24903 -27.28815
-24.82225 -22.49171 -21.70050 -20.38965 -19.48613 -17.52464 -16.45625 -15.79428
-15.50209 -14.72730 -14.05125 -13.96014 -13.50996 -13.38665 -12.92658 -12.47379
-12.20305 -12.15441 -11.72195 -11.34228 -11.17909 -11.10808 -10.80925 -10.63362
-10.19573 -9.82167 -9.61688 -9.20911 -8.47863 -8.37690 -7.33222 -6.28114
-5.88807 -4.13431 1.72623 2.50538 3.17508 3.27277 3.35335 3.40932
3.57756 4.24905 4.45641 4.65908 5.15124 5.25038 5.34615 5.65666
5.82286 5.87795 6.07737 6.09503 6.18511 6.26687 6.40040 6.50545
6.67741 6.85434 7.02302 7.22557 7.25477 7.34393 7.39368 7.68051
7.85550 7.98073 8.21674 8.37940 8.60693 8.97492 9.53571 10.99067
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.035646 B = 0.006552 C = 0.006061
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 785.319421 B = 4272.541246 C = 4618.520621
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.101 3.899
2 N -0.620 5.620
3 C 0.250 3.750
4 C -0.529 4.529
5 H 0.060 0.940
6 C 0.060 3.940
7 N -0.896 5.896
8 Si 0.894 3.106
9 H -0.273 1.273
10 H -0.284 1.284
11 H -0.283 1.283
12 C 0.221 3.779
13 C -0.144 4.144
14 C -0.094 4.094
15 C 0.028 3.972
16 N -0.602 5.602
17 H 0.407 0.593
18 C 0.044 3.956
19 C -0.223 4.223
20 C -0.059 4.059
21 C -0.196 4.196
22 H 0.033 0.967
23 H 0.064 0.936
24 H 0.054 0.946
25 H 0.029 0.971
26 H 0.034 0.966
27 H 0.263 0.737
28 H 0.138 0.862
29 H 0.112 0.888
30 H 0.160 0.840
31 H 0.136 0.864
32 H 0.114 0.886
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.020 -14.029 2.010 14.209
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.043 4.043
2 N -0.328 5.328
3 C 0.130 3.870
4 C -0.568 4.568
5 H 0.078 0.922
6 C -0.141 4.141
7 N -0.536 5.536
8 Si 0.722 3.278
9 H -0.197 1.197
10 H -0.210 1.210
11 H -0.209 1.209
12 C 0.115 3.885
13 C -0.166 4.166
14 C -0.115 4.115
15 C -0.077 4.077
16 N -0.206 5.206
17 H 0.242 0.758
18 C -0.084 4.084
19 C -0.250 4.250
20 C -0.064 4.064
21 C -0.221 4.221
22 H 0.052 0.948
23 H 0.083 0.917
24 H 0.072 0.928
25 H 0.047 0.953
26 H 0.052 0.948
27 H 0.072 0.928
28 H 0.156 0.844
29 H 0.130 0.870
30 H 0.177 0.823
31 H 0.154 0.846
32 H 0.132 0.868
Dipole moment (debyes) X Y Z Total
from point charges -0.918 -13.661 2.057 13.845
hybrid contribution 0.626 0.265 -1.045 1.246
sum -0.292 -13.396 1.012 13.437
Atomic orbital electron populations
1.21422 0.81617 1.01743 0.99494 1.46983 1.04149 1.04190 1.77517
1.19243 0.92021 0.78952 0.96777 1.21677 1.35994 1.06247 0.92879
0.92179 1.24966 0.95526 0.96338 0.97301 1.69944 1.38609 1.14355
1.30645 0.86491 0.77974 0.78463 0.84843 1.19732 1.20971 1.20916
1.17647 0.91057 0.85950 0.93838 1.20727 0.92725 0.97908 1.05251
1.19742 0.98339 0.89221 1.04178 1.18061 0.93866 0.84499 1.11312
1.41631 1.07722 1.04364 1.66888 0.75776 1.21586 0.86282 0.95504
1.05004 1.21543 0.97473 0.91363 1.14605 1.18808 0.91719 0.92739
1.03116 1.19774 0.98511 0.89348 1.14492 0.94845 0.91675 0.92760
0.95252 0.94789 0.92769 0.84446 0.87020 0.82315 0.84626 0.86779
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 1.86 10.18 59.85 0.61 2.47 16
2 N -0.62 -13.73 3.00 -180.96 -0.54 -14.27 16
3 C 0.25 6.36 4.91 -5.20 -0.03 6.33 16
4 C -0.53 -14.59 9.39 -34.44 -0.32 -14.91 16
5 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16
6 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16
7 N -0.90 -25.82 13.29 55.43 0.74 -25.09 16
8 Si 0.89 21.45 29.54 -169.99 -5.02 16.42 16
9 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16
10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
12 C 0.22 4.68 6.55 -83.71 -0.55 4.14 16
13 C -0.14 -2.99 9.18 -39.35 -0.36 -3.35 16
14 C -0.09 -1.68 10.06 -39.47 -0.40 -2.08 16
15 C 0.03 0.48 7.27 -83.89 -0.61 -0.13 16
16 N -0.60 -8.00 6.08 -10.61 -0.06 -8.07 16
17 H 0.41 4.02 8.96 -40.82 -0.37 3.66 16
18 C 0.04 0.54 11.81 -16.75 -0.20 0.34 16
19 C -0.22 -3.29 11.08 -37.67 -0.42 -3.71 16
20 C -0.06 -1.07 6.37 -105.14 -0.67 -1.74 16
21 C -0.20 -3.77 9.26 -39.06 -0.36 -4.13 16
22 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16
23 H 0.06 1.21 8.07 -51.93 -0.42 0.79 16
24 H 0.05 0.90 6.19 -51.93 -0.32 0.58 16
25 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16
26 H 0.03 0.91 6.18 -51.93 -0.32 0.58 16
27 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16
28 H 0.14 3.06 6.11 -52.49 -0.32 2.74 16
29 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16
30 H 0.16 1.28 8.06 -52.48 -0.42 0.86 16
31 H 0.14 1.70 8.06 -52.48 -0.42 1.28 16
32 H 0.11 2.01 6.12 -52.49 -0.32 1.69 16
LS Contribution 272.90 15.07 4.11 4.11
Total: -1.00 -30.88 272.90 -7.90 -38.79
By element:
Atomic # 1 Polarization: 7.02 SS G_CDS: -3.72 Total: 3.29 kcal
Atomic # 6 Polarization: -11.79 SS G_CDS: -3.40 Total: -15.19 kcal
Atomic # 7 Polarization: -47.55 SS G_CDS: 0.13 Total: -47.42 kcal
Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal
Total LS contribution 4.11 Total: 4.11 kcal
Total: -30.88 -7.90 -38.79 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261114021.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 105.878 kcal
(2) G-P(sol) polarization free energy of solvation -30.883 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.995 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.787 kcal
(6) G-S(sol) free energy of system = (1) + (5) 67.091 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds