Wall clock time and date at job start Mon Mar 30 2020 03:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46494 * 120.00123 * 2 1 4 4 C 1.50700 * 109.47222 * 269.99869 * 3 2 1 5 5 H 1.08003 * 120.00146 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00030 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00276 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 120.00053 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46693 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47328 * 120.00016 * 8 6 4 11 11 H 1.48506 * 109.46878 * 240.00110 * 8 6 4 12 12 C 1.39964 * 119.99590 * 179.97438 * 2 1 3 13 13 C 1.39427 * 119.88347 * 180.02562 * 12 2 1 14 14 C 1.37656 * 120.60210 * 179.97438 * 13 12 2 15 15 C 1.39118 * 120.02019 * 359.97438 * 14 13 12 16 16 N 1.37949 * 133.32661 * 180.02562 * 15 14 13 17 17 H 0.97001 * 125.07713 * 359.97438 * 16 15 14 18 18 C 1.36794 * 109.83916 * 180.26416 * 16 15 14 19 19 C 1.34240 * 109.94082 * 359.54218 * 18 16 15 20 20 C 1.40608 * 119.55578 * 0.02562 * 15 14 13 21 21 C 1.38210 * 119.88935 * 0.02562 * 12 2 1 22 22 H 1.08998 * 109.47635 * 270.00347 * 1 2 3 23 23 H 1.08998 * 109.46897 * 30.00275 * 1 2 3 24 24 H 1.09003 * 109.47089 * 149.99708 * 1 2 3 25 25 H 1.09007 * 109.47492 * 29.99955 * 3 2 1 26 26 H 1.09000 * 109.47346 * 149.99805 * 3 2 1 27 27 H 0.97001 * 120.00051 * 180.02562 * 7 6 4 28 28 H 1.07998 * 119.69572 * 359.97438 * 13 12 2 29 29 H 1.07995 * 119.98822 * 179.97438 * 14 13 12 30 30 H 1.08005 * 125.02431 * 179.73316 * 18 16 15 31 31 H 1.08005 * 126.48581 * 180.17165 * 19 18 16 32 32 H 1.07998 * 120.20658 * 0.02562 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0982 1.0957 -2.2417 6 6 3.1261 2.8779 -1.6727 7 7 3.5534 3.6180 -0.6731 8 14 3.4369 3.4175 -3.4339 9 1 2.8600 2.4168 -4.3673 10 1 2.7989 4.7380 -3.6670 11 1 4.8994 3.5262 -3.6675 12 6 2.1648 -1.2122 0.0005 13 6 3.5590 -1.2094 0.0011 14 6 4.2621 -2.3929 0.0021 15 6 3.5820 -3.6065 0.0032 16 7 3.9948 -4.9228 0.0049 17 1 4.9190 -5.2172 0.0052 18 6 2.9058 -5.7508 -0.0006 19 6 1.7776 -5.0234 0.0043 20 6 2.1760 -3.6136 0.0027 21 6 1.4713 -2.4077 0.0005 22 1 -0.3634 0.0001 1.0276 23 1 -0.3633 0.8900 -0.5139 24 1 -0.3633 -0.8900 -0.5139 25 1 1.6085 2.0284 0.5138 26 1 3.1499 1.1384 0.5139 27 1 4.0296 4.4443 -0.8504 28 1 4.0922 -0.2702 0.0007 29 1 5.3420 -2.3792 0.0021 30 1 2.9478 -6.8300 -0.0048 31 1 0.7673 -5.4052 0.0044 32 1 0.3913 -2.4095 -0.0003 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261114021.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:52 Heat of formation + Delta-G solvation = 48.621302 kcal Electronic energy + Delta-G solvation = -15290.317944 eV Core-core repulsion = 12829.595551 eV Total energy + Delta-G solvation = -2460.722393 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.82286 -39.09270 -35.96591 -34.57378 -32.63806 -30.31339 -29.67460 -28.86504 -26.55076 -24.31332 -23.08634 -21.60131 -20.93464 -18.79268 -18.58595 -17.36641 -16.96912 -16.48961 -15.70257 -15.39611 -14.93797 -14.76258 -14.35752 -13.99809 -13.81962 -13.56841 -13.21000 -13.06695 -12.97622 -12.60987 -12.53579 -12.46148 -12.09630 -11.62191 -11.39331 -10.62083 -10.53929 -9.89837 -8.59958 -8.29157 -7.56280 -6.34769 0.37076 1.04583 1.37200 1.38613 1.51340 2.02726 2.36317 2.48238 2.71659 3.08221 3.18881 3.97332 4.16219 4.39645 4.44227 4.59347 4.64275 4.74283 4.81640 4.91339 4.93540 5.07881 5.16929 5.26422 5.38406 5.54793 5.62057 5.72493 5.86563 6.04629 6.11420 6.34249 6.55759 6.88325 6.97036 7.00750 7.37556 8.85836 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.035646 B = 0.006552 C = 0.006061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.319421 B = 4272.541246 C = 4618.520621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.636 5.636 3 C 0.267 3.733 4 C -0.540 4.540 5 H 0.047 0.953 6 C 0.013 3.987 7 N -0.927 5.927 8 Si 0.961 3.039 9 H -0.272 1.272 10 H -0.274 1.274 11 H -0.276 1.276 12 C 0.193 3.807 13 C -0.179 4.179 14 C -0.085 4.085 15 C 0.017 3.983 16 N -0.590 5.590 17 H 0.426 0.574 18 C 0.078 3.922 19 C -0.251 4.251 20 C -0.079 4.079 21 C -0.198 4.198 22 H 0.049 0.951 23 H 0.056 0.944 24 H 0.073 0.927 25 H 0.009 0.991 26 H 0.012 0.988 27 H 0.267 0.733 28 H 0.108 0.892 29 H 0.135 0.865 30 H 0.214 0.786 31 H 0.156 0.844 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.841 -17.009 1.227 17.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.346 5.346 3 C 0.146 3.854 4 C -0.579 4.579 5 H 0.066 0.934 6 C -0.186 4.186 7 N -0.567 5.567 8 Si 0.786 3.214 9 H -0.197 1.197 10 H -0.199 1.199 11 H -0.202 1.202 12 C 0.089 3.911 13 C -0.202 4.202 14 C -0.106 4.106 15 C -0.089 4.089 16 N -0.196 5.196 17 H 0.265 0.735 18 C -0.050 4.050 19 C -0.277 4.277 20 C -0.085 4.085 21 C -0.223 4.223 22 H 0.068 0.932 23 H 0.075 0.925 24 H 0.091 0.909 25 H 0.027 0.973 26 H 0.030 0.970 27 H 0.076 0.924 28 H 0.126 0.874 29 H 0.153 0.847 30 H 0.231 0.769 31 H 0.174 0.826 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.728 -16.688 1.280 16.753 hybrid contribution 0.607 0.962 -0.753 1.365 sum -0.121 -15.725 0.527 15.735 Atomic orbital electron populations 1.21531 0.79741 1.02209 1.00675 1.46866 1.05302 1.03390 1.79042 1.18762 0.91093 0.80246 0.95337 1.21836 1.36201 1.06413 0.93416 0.93433 1.25768 0.95118 0.96287 1.01438 1.70045 1.39152 1.14805 1.32713 0.85457 0.78054 0.78132 0.79715 1.19683 1.19945 1.20171 1.17878 0.91406 0.86186 0.95592 1.20599 0.92983 0.97931 1.08638 1.19887 0.99439 0.88814 1.02474 1.18126 0.93842 0.85882 1.11083 1.41722 1.09360 1.02851 1.65641 0.73524 1.22422 0.84737 0.97554 1.00323 1.21874 0.99624 0.89605 1.16609 1.19302 0.92450 0.94090 1.02637 1.19927 0.99141 0.89209 1.13990 0.93233 0.92518 0.90880 0.97316 0.96959 0.92401 0.87405 0.84714 0.76942 0.82646 0.85660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.81 10.18 127.77 1.30 5.11 16 2 N -0.64 -29.48 3.00 -726.44 -2.18 -31.66 16 3 C 0.27 14.46 4.91 85.63 0.42 14.88 16 4 C -0.54 -31.04 9.39 25.60 0.24 -30.79 16 5 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 6 C 0.01 0.73 5.46 84.65 0.46 1.20 16 7 N -0.93 -54.98 13.29 21.45 0.28 -54.70 16 8 Si 0.96 44.69 29.54 68.60 2.03 46.72 16 9 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 C 0.19 8.50 6.55 38.12 0.25 8.75 16 13 C -0.18 -7.81 9.18 22.42 0.21 -7.61 16 14 C -0.09 -3.05 10.06 22.34 0.22 -2.83 16 15 C 0.02 0.55 7.27 38.97 0.28 0.83 16 16 N -0.59 -13.26 6.08 -187.49 -1.14 -14.40 16 17 H 0.43 6.48 8.96 -92.71 -0.83 5.65 16 18 C 0.08 1.49 11.81 83.01 0.98 2.47 16 19 C -0.25 -6.49 11.08 23.51 0.26 -6.23 16 20 C -0.08 -2.75 6.37 -20.20 -0.13 -2.88 16 21 C -0.20 -7.61 9.26 22.61 0.21 -7.40 16 22 H 0.05 1.66 8.14 -2.39 -0.02 1.65 16 23 H 0.06 2.17 8.07 -2.39 -0.02 2.15 16 24 H 0.07 2.42 6.19 -2.39 -0.01 2.40 16 25 H 0.01 0.50 8.07 -2.38 -0.02 0.48 16 26 H 0.01 0.72 6.18 -2.39 -0.01 0.70 16 27 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 28 H 0.11 5.24 6.11 -2.91 -0.02 5.22 16 29 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 30 H 0.21 1.83 8.06 -2.91 -0.02 1.80 16 31 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 32 H 0.13 4.36 6.12 -2.91 -0.02 4.34 16 Total: -1.00 -69.18 272.90 4.01 -65.18 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 0.30 Total: 13.34 kcal Atomic # 6 Polarization: -29.20 SS G_CDS: 4.71 Total: -24.49 kcal Atomic # 7 Polarization: -97.72 SS G_CDS: -3.03 Total: -100.75 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -69.18 4.01 -65.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261114021.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.798 kcal (2) G-P(sol) polarization free energy of solvation -69.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds