Wall clock time and date at job start Mon Mar 30 2020 03:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99950 * 2 1 4 4 H 1.48500 * 109.46918 * 264.41013 * 3 2 1 5 5 H 1.48504 * 109.47148 * 24.40736 * 3 2 1 6 6 H 1.48495 * 109.47059 * 144.41107 * 3 2 1 7 7 C 1.37866 * 119.99918 * 179.72525 * 2 1 3 8 8 H 1.08005 * 120.00352 * 5.10560 * 7 2 1 9 9 C 1.50700 * 120.00239 * 185.10250 * 7 2 1 10 10 H 1.09007 * 109.47199 * 335.03022 * 9 7 2 11 11 C 1.53002 * 109.47382 * 95.02669 * 9 7 2 12 12 C 1.53002 * 109.47397 * 185.00266 * 11 9 7 13 13 C 1.50704 * 109.46702 * 180.02562 * 12 11 9 14 14 C 1.38233 * 120.00169 * 269.72472 * 13 12 11 15 15 C 1.38233 * 120.00145 * 179.77164 * 14 13 12 16 16 C 1.38234 * 119.99798 * 0.48518 * 15 14 13 17 17 C 1.38234 * 120.00110 * 359.78661 * 16 15 14 18 18 C 1.38235 * 120.00201 * 359.96155 * 17 16 15 19 19 C 1.52996 * 109.47597 * 215.02954 * 9 7 2 20 20 C 1.53005 * 117.49984 * 124.31387 * 19 9 7 21 21 C 1.53003 * 117.49823 * 55.65991 * 19 9 7 22 22 H 0.97007 * 119.99936 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.46945 * 305.00883 * 11 9 7 24 24 H 1.09003 * 109.46711 * 64.99755 * 11 9 7 25 25 H 1.09001 * 109.46900 * 300.00077 * 12 11 9 26 26 H 1.08999 * 109.46961 * 60.00339 * 12 11 9 27 27 H 1.08002 * 119.99625 * 0.02562 * 14 13 12 28 28 H 1.07998 * 120.00279 * 180.25469 * 15 14 13 29 29 H 1.08000 * 119.99910 * 179.77441 * 16 15 14 30 30 H 1.08002 * 120.00254 * 179.97438 * 17 16 15 31 31 H 1.07992 * 120.00289 * 179.97438 * 18 17 16 32 32 H 1.08999 * 115.55053 * 269.98906 * 19 9 7 33 33 H 1.09002 * 117.49642 * 0.02562 * 20 19 9 34 34 H 1.09003 * 117.49748 * 145.02192 * 20 19 9 35 35 H 1.09008 * 117.49889 * 214.98370 * 21 19 9 36 36 H 1.09002 * 117.49818 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6148 1.9782 -1.3934 5 1 1.3925 2.6840 0.5786 6 1 3.4827 1.4772 0.8148 7 6 2.0045 -1.1940 0.0057 8 1 1.4677 -2.1279 -0.0730 9 6 3.5070 -1.1961 0.1218 10 1 3.9012 -0.2484 -0.2454 11 6 3.9051 -1.3801 1.5876 12 6 5.4242 -1.2577 1.7228 13 6 5.8162 -1.4396 3.1666 14 6 5.8907 -0.3438 4.0060 15 6 6.2456 -0.5113 5.3314 16 6 6.5359 -1.7733 5.8150 17 6 6.4669 -2.8685 4.9743 18 6 6.1069 -2.7017 3.6501 19 6 4.0813 -2.3441 -0.7106 20 6 5.1237 -1.9930 -1.7742 21 6 3.7081 -2.3971 -2.1935 22 1 -0.4850 0.8401 0.0004 23 1 3.4233 -0.6131 2.1940 24 1 3.5880 -2.3655 1.9292 25 1 5.9059 -2.0248 1.1165 26 1 5.7411 -0.2723 1.3813 27 1 5.6675 0.6426 3.6271 28 1 6.2998 0.3443 5.9882 29 1 6.8167 -1.9037 6.8497 30 1 6.6941 -3.8544 5.3520 31 1 6.0534 -3.5572 2.9932 32 1 4.1969 -3.2928 -0.1865 33 1 5.4006 -0.9441 -1.8806 34 1 5.9248 -2.7109 -1.9500 35 1 3.5784 -3.3807 -2.6450 36 1 3.0531 -1.6143 -2.5759 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261119981.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:34 Heat of formation + Delta-G solvation = 11.392354 kcal Electronic energy + Delta-G solvation = -15534.650943 eV Core-core repulsion = 13175.854525 eV Total energy + Delta-G solvation = -2358.796418 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.18891 -38.78328 -35.37448 -34.43307 -31.88573 -31.70662 -28.63991 -25.31093 -23.45960 -23.34653 -23.02204 -21.68666 -20.55464 -18.95705 -17.53921 -16.55068 -16.28708 -16.15464 -15.73024 -15.41888 -14.61413 -14.22472 -14.18773 -14.03610 -13.78248 -13.43297 -13.02574 -12.74460 -12.55838 -12.22528 -12.08207 -11.85730 -11.80566 -11.67983 -11.49098 -11.08971 -10.88337 -10.59159 -10.33760 -9.76272 -9.47492 -8.25499 -6.25551 0.53249 0.55828 1.32064 1.33966 1.44132 2.35601 2.94025 3.11340 3.21157 3.94698 4.01681 4.08965 4.22887 4.33176 4.34092 4.37458 4.43956 4.58466 4.71596 4.74115 4.79556 4.89186 4.92591 4.99794 5.18993 5.23888 5.24335 5.30610 5.43568 5.48087 5.49778 5.64939 5.66756 5.73946 5.82957 5.87137 6.20702 6.39140 6.81028 7.38061 8.91976 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.023238 B = 0.007775 C = 0.006547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.626842 B = 3600.362920 C = 4275.869026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.009 3.991 3 Si 0.931 3.069 4 H -0.269 1.269 5 H -0.292 1.292 6 H -0.243 1.243 7 C -0.495 4.495 8 H 0.029 0.971 9 C 0.042 3.958 10 H 0.029 0.971 11 C -0.088 4.088 12 C -0.075 4.075 13 C -0.089 4.089 14 C -0.142 4.142 15 C -0.126 4.126 16 C -0.136 4.136 17 C -0.123 4.123 18 C -0.132 4.132 19 C -0.136 4.136 20 C -0.170 4.170 21 C -0.184 4.184 22 H 0.262 0.738 23 H 0.029 0.971 24 H 0.046 0.954 25 H 0.084 0.916 26 H 0.061 0.939 27 H 0.116 0.884 28 H 0.139 0.861 29 H 0.145 0.855 30 H 0.144 0.856 31 H 0.129 0.871 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.112 0.888 35 H 0.096 0.904 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.326 -2.874 7.089 18.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.187 4.187 3 Si 0.756 3.244 4 H -0.194 1.194 5 H -0.219 1.219 6 H -0.166 1.166 7 C -0.533 4.533 8 H 0.048 0.952 9 C 0.023 3.977 10 H 0.047 0.953 11 C -0.127 4.127 12 C -0.112 4.112 13 C -0.089 4.089 14 C -0.160 4.160 15 C -0.143 4.143 16 C -0.153 4.153 17 C -0.141 4.141 18 C -0.150 4.150 19 C -0.154 4.154 20 C -0.206 4.206 21 C -0.221 4.221 22 H 0.071 0.929 23 H 0.048 0.952 24 H 0.065 0.935 25 H 0.102 0.898 26 H 0.080 0.920 27 H 0.134 0.866 28 H 0.156 0.844 29 H 0.163 0.837 30 H 0.162 0.838 31 H 0.147 0.853 32 H 0.115 0.885 33 H 0.104 0.896 34 H 0.130 0.870 35 H 0.114 0.886 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 16.176 -2.762 7.084 17.874 hybrid contribution -0.679 0.882 -0.207 1.132 sum 15.498 -1.880 6.877 17.059 Atomic orbital electron populations 1.70067 1.08168 1.27642 1.53631 1.25875 0.95340 1.02640 0.94851 0.85965 0.79696 0.79374 0.79374 1.19402 1.21875 1.16597 1.21210 0.91737 0.92549 1.47794 0.95222 1.18796 0.93020 0.93762 0.92133 0.95308 1.21615 0.93510 0.99934 0.97598 1.20661 0.95986 1.02426 0.92110 1.20186 0.98114 0.94098 0.96464 1.21270 1.01263 0.98668 0.94801 1.21408 0.99251 0.98575 0.95113 1.21450 1.00617 0.92445 1.00815 1.21460 0.99296 1.00008 0.93345 1.21283 1.00291 0.96636 0.96768 1.22284 1.02280 0.99965 0.90866 1.23090 0.92033 1.01951 1.03570 1.22761 0.98386 1.02051 0.98947 0.92891 0.95216 0.93527 0.89758 0.91995 0.86611 0.84360 0.83704 0.83841 0.85308 0.88506 0.89636 0.86967 0.88573 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.49 13.96 21.44 0.30 -60.19 16 2 C 0.01 0.52 5.47 84.65 0.46 0.98 16 3 Si 0.93 44.72 26.98 68.60 1.85 46.57 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.24 -10.71 6.83 99.48 0.68 -10.03 16 7 C -0.49 -28.00 8.31 25.60 0.21 -27.78 16 8 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 9 C 0.04 1.88 1.62 -11.54 -0.02 1.86 16 10 H 0.03 1.31 5.03 -2.38 -0.01 1.30 16 11 C -0.09 -3.62 4.61 30.60 0.14 -3.48 16 12 C -0.07 -2.43 5.17 29.85 0.15 -2.27 16 13 C -0.09 -2.69 5.13 -19.86 -0.10 -2.79 16 14 C -0.14 -4.10 9.70 22.27 0.22 -3.89 16 15 C -0.13 -3.02 10.05 22.27 0.22 -2.79 16 16 C -0.14 -2.91 10.05 22.27 0.22 -2.69 16 17 C -0.12 -2.77 10.05 22.27 0.22 -2.55 16 18 C -0.13 -3.51 9.70 22.27 0.22 -3.29 16 19 C -0.14 -5.18 4.20 -10.79 -0.05 -5.22 16 20 C -0.17 -5.30 10.18 30.62 0.31 -4.99 16 21 C -0.18 -6.86 9.79 30.62 0.30 -6.56 16 22 H 0.26 15.68 8.31 -92.70 -0.77 14.91 16 23 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.05 1.92 8.14 -2.39 -0.02 1.91 16 25 H 0.08 2.48 7.32 -2.39 -0.02 2.46 16 26 H 0.06 2.00 8.08 -2.39 -0.02 1.98 16 27 H 0.12 3.29 8.06 -2.91 -0.02 3.26 16 28 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 29 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 30 H 0.14 2.39 8.06 -2.91 -0.02 2.36 16 31 H 0.13 3.08 8.06 -2.91 -0.02 3.06 16 32 H 0.10 3.47 8.08 -2.39 -0.02 3.45 16 33 H 0.09 2.67 8.03 -2.39 -0.02 2.65 16 34 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 35 H 0.10 3.15 8.14 -2.38 -0.02 3.14 16 36 H 0.07 2.89 8.03 -2.39 -0.02 2.87 16 Total: -1.00 -65.80 299.82 5.67 -60.13 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 1.00 Total: 18.95 kcal Atomic # 6 Polarization: -67.98 SS G_CDS: 2.52 Total: -65.46 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: 0.30 Total: -60.19 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.85 Total: 46.57 kcal Total: -65.80 5.67 -60.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261119981.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.521 kcal (2) G-P(sol) polarization free energy of solvation -65.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds