Wall clock time and date at job start Mon Mar 30 2020 02:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47181 * 2 1 4 4 N 1.46506 * 109.47191 * 240.00509 * 2 1 3 5 5 N 1.40022 * 125.89640 * 51.51224 * 4 2 1 6 6 C 1.30232 * 109.62808 * 179.97438 * 5 4 2 7 7 C 1.41636 * 108.50140 * 0.02562 * 6 5 4 8 8 C 1.40378 * 133.40798 * 180.02562 * 7 6 5 9 9 C 1.38000 * 120.27772 * 180.02562 * 8 7 6 10 10 C 1.38090 * 120.84137 * 359.95190 * 9 8 7 11 11 C 1.40524 * 120.29101 * 0.02562 * 10 9 8 12 12 C 1.40893 * 120.32035 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99840 * 142.77158 * 12 11 10 14 14 C 1.39980 * 120.00557 * 322.77115 * 12 11 10 15 15 N 1.30837 * 119.99968 * 170.32724 * 14 12 11 16 16 Si 1.86799 * 119.99751 * 350.32908 * 14 12 11 17 17 H 1.48509 * 109.47036 * 89.09404 * 16 14 12 18 18 H 1.48498 * 109.47131 * 209.09410 * 16 14 12 19 19 H 1.48499 * 109.47080 * 329.09828 * 16 14 12 20 20 C 1.36386 * 125.89855 * 231.20473 * 4 2 1 21 21 H 1.09001 * 109.46846 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47161 * 59.99585 * 1 2 3 23 23 H 1.08997 * 109.47146 * 299.99511 * 1 2 3 24 24 H 1.08995 * 109.47433 * 120.00913 * 2 1 3 25 25 H 1.09010 * 109.46531 * 60.00478 * 3 2 1 26 26 H 1.08999 * 109.47211 * 180.02562 * 3 2 1 27 27 H 1.08995 * 109.47683 * 300.00760 * 3 2 1 28 28 H 1.08004 * 125.74415 * 179.97438 * 6 5 4 29 29 H 1.07997 * 119.85933 * 359.97438 * 8 7 6 30 30 H 1.07995 * 119.58084 * 179.97438 * 9 8 7 31 31 H 1.08004 * 119.85448 * 180.02562 * 10 9 8 32 32 H 0.97001 * 119.99516 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 -1.1963 5 7 1.6265 -0.4262 -2.5143 6 6 2.2577 -1.2245 -3.3268 7 6 3.1063 -2.0633 -2.5638 8 6 4.0014 -3.0915 -2.8989 9 6 4.7088 -3.7473 -1.9121 10 6 4.5519 -3.4065 -0.5831 11 6 3.6641 -2.3815 -0.2143 12 6 3.5039 -2.0329 1.1414 13 1 3.3645 -0.9989 1.4202 14 6 3.5254 -3.0267 2.1270 15 7 3.5673 -2.6933 3.3914 16 14 3.4942 -4.8290 1.6368 17 1 4.8846 -5.3133 1.4425 18 1 2.8389 -5.6220 2.7078 19 1 2.7344 -4.9845 0.3704 20 6 2.9375 -1.6978 -1.2189 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 0.5137 0.8900 24 1 1.8933 -0.5139 0.8898 25 1 1.6767 1.9563 0.8901 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9565 -0.8898 28 1 2.1512 -1.2442 -4.4014 29 1 4.1364 -3.3709 -3.9334 30 1 5.3942 -4.5369 -2.1826 31 1 5.1139 -3.9301 0.1762 32 1 3.5826 -3.3820 4.0743 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261122033.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:28 Heat of formation + Delta-G solvation = 59.322582 kcal Electronic energy + Delta-G solvation = -16034.775466 eV Core-core repulsion = 13574.517115 eV Total energy + Delta-G solvation = -2460.258351 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.06659 -37.96220 -36.66131 -35.08721 -32.64783 -30.68546 -30.00547 -28.19107 -26.84615 -23.85900 -23.24216 -22.63290 -20.34118 -19.35638 -18.05806 -17.25985 -16.46305 -15.97615 -15.76405 -15.48908 -15.16167 -14.67916 -14.29490 -14.00831 -13.71097 -13.42608 -13.15307 -12.98015 -12.84836 -12.61235 -12.38661 -12.23071 -11.86161 -11.70556 -11.60856 -11.21532 -11.04390 -10.55044 -9.24364 -8.84405 -8.65381 -6.39106 0.31288 0.94148 1.27165 1.38158 1.47212 1.72820 1.83486 2.14301 2.69974 3.40567 3.68620 4.00185 4.06456 4.14241 4.33119 4.38664 4.52362 4.64552 4.66018 4.78327 4.80118 4.85858 4.92783 5.09739 5.20315 5.28634 5.32203 5.36881 5.70660 5.92327 5.99287 6.14349 6.32830 6.45708 6.59401 6.80976 7.02396 8.23607 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.021689 B = 0.013516 C = 0.009280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.640991 B = 2071.064217 C = 3016.614777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.136 3.864 3 C -0.146 4.146 4 N -0.386 5.386 5 N -0.284 5.284 6 C 0.047 3.953 7 C -0.172 4.172 8 C -0.153 4.153 9 C -0.112 4.112 10 C -0.242 4.242 11 C 0.066 3.934 12 C -0.479 4.479 13 H 0.071 0.929 14 C 0.052 3.948 15 N -0.855 5.855 16 Si 0.958 3.042 17 H -0.255 1.255 18 H -0.284 1.284 19 H -0.261 1.261 20 C 0.052 3.948 21 H 0.041 0.959 22 H 0.068 0.932 23 H 0.093 0.907 24 H 0.102 0.898 25 H 0.093 0.907 26 H 0.037 0.963 27 H 0.065 0.935 28 H 0.222 0.778 29 H 0.141 0.859 30 H 0.133 0.867 31 H 0.104 0.896 32 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.705 0.817 -7.246 7.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.035 3.965 3 C -0.204 4.204 4 N -0.174 5.174 5 N -0.100 5.100 6 C -0.146 4.146 7 C -0.180 4.180 8 C -0.175 4.175 9 C -0.131 4.131 10 C -0.265 4.265 11 C 0.061 3.939 12 C -0.509 4.509 13 H 0.089 0.911 14 C -0.161 4.161 15 N -0.483 5.483 16 Si 0.783 3.217 17 H -0.180 1.180 18 H -0.211 1.211 19 H -0.186 1.186 20 C -0.065 4.065 21 H 0.061 0.939 22 H 0.087 0.913 23 H 0.111 0.889 24 H 0.120 0.880 25 H 0.112 0.888 26 H 0.056 0.944 27 H 0.084 0.916 28 H 0.239 0.761 29 H 0.159 0.841 30 H 0.151 0.849 31 H 0.122 0.878 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.642 1.863 -6.704 7.854 hybrid contribution 0.732 -1.225 0.444 1.495 sum -2.909 0.638 -6.260 6.932 Atomic orbital electron populations 1.21969 0.92532 1.01873 1.03663 1.21736 0.96233 0.93930 0.84615 1.22050 1.00391 0.94457 1.03544 1.48328 1.34765 1.29809 1.04530 1.76382 1.22469 1.23149 0.87995 1.24313 0.95405 0.94006 1.00853 1.19199 1.04267 1.02828 0.91726 1.20438 0.99622 0.98003 0.99393 1.20785 1.00120 1.00112 0.92089 1.20978 1.03723 1.05117 0.96640 1.17038 0.91849 0.93226 0.91829 1.19259 1.45899 0.95817 0.89966 0.91091 1.26577 0.90863 1.04532 0.94145 1.69654 1.38864 1.38034 1.01730 0.85573 0.80027 0.77864 0.78219 1.18012 1.21066 1.18569 1.19541 0.95622 0.94914 0.96414 0.93943 0.91334 0.88870 0.87994 0.88849 0.94380 0.91583 0.76123 0.84106 0.84943 0.87794 0.89850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.64 9.32 71.98 0.67 -3.97 16 2 C 0.14 5.34 3.49 44.99 0.16 5.50 16 3 C -0.15 -4.90 9.52 71.98 0.69 -4.22 16 4 N -0.39 -16.89 3.34 -318.06 -1.06 -17.95 16 5 N -0.28 -11.26 12.20 -56.15 -0.69 -11.95 16 6 C 0.05 1.67 12.06 85.77 1.03 2.71 16 7 C -0.17 -7.20 6.17 -21.40 -0.13 -7.33 16 8 C -0.15 -5.79 10.11 22.73 0.23 -5.56 16 9 C -0.11 -4.47 9.98 22.18 0.22 -4.25 16 10 C -0.24 -11.36 7.08 22.79 0.16 -11.20 16 11 C 0.07 3.35 5.00 -21.25 -0.11 3.24 16 12 C -0.48 -25.89 8.15 23.34 0.19 -25.70 16 13 H 0.07 4.04 6.12 -2.91 -0.02 4.03 16 14 C 0.05 2.74 5.47 85.26 0.47 3.20 16 15 N -0.86 -45.81 13.93 21.83 0.30 -45.51 16 16 Si 0.96 42.94 24.53 68.60 1.68 44.62 16 17 H -0.25 -10.75 6.61 99.48 0.66 -10.09 16 18 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 19 H -0.26 -12.22 6.89 99.48 0.69 -11.53 16 20 C 0.05 2.48 6.83 39.78 0.27 2.75 16 21 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.07 2.11 8.12 -2.38 -0.02 2.09 16 23 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 24 H 0.10 4.64 4.54 -2.39 -0.01 4.63 16 25 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 26 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.22 5.52 8.06 -2.91 -0.02 5.50 16 29 H 0.14 4.14 8.06 -2.91 -0.02 4.11 16 30 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 31 H 0.10 4.85 4.95 -2.91 -0.01 4.83 16 32 H 0.29 14.21 8.30 -92.71 -0.77 13.44 16 Total: -1.00 -60.93 264.69 5.14 -55.79 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 1.05 Total: 19.83 kcal Atomic # 6 Polarization: -48.68 SS G_CDS: 3.85 Total: -44.83 kcal Atomic # 7 Polarization: -73.96 SS G_CDS: -1.44 Total: -75.41 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.68 Total: 44.62 kcal Total: -60.93 5.14 -55.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261122033.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.108 kcal (2) G-P(sol) polarization free energy of solvation -60.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds