Wall clock time and date at job start Mon Mar 30 2020 03:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46905 * 110.99696 * 2 1 4 4 C 1.46905 * 111.00056 * 123.95344 * 2 1 3 5 5 C 1.52998 * 109.46936 * 66.04724 * 4 2 1 6 6 N 1.46508 * 109.46797 * 179.97438 * 5 4 2 7 7 C 1.36932 * 120.00151 * 270.00065 * 6 5 4 8 8 H 1.08002 * 120.00085 * 139.58206 * 7 6 5 9 9 C 1.38815 * 120.00117 * 319.58172 * 7 6 5 10 10 N 1.31618 * 119.99645 * 342.31383 * 9 7 6 11 11 Si 1.86794 * 120.00348 * 162.31450 * 9 7 6 12 12 H 1.48506 * 109.46987 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47141 * 119.99463 * 11 9 7 14 14 H 1.48498 * 109.47477 * 239.99981 * 11 9 7 15 15 C 1.46497 * 119.99453 * 89.99946 * 6 5 4 16 16 C 1.53045 * 113.15368 * 234.43358 * 15 6 5 17 17 S 1.81428 * 89.93359 * 277.62801 * 16 15 6 18 18 C 1.53051 * 113.15015 * 134.06625 * 15 6 5 19 19 H 1.09003 * 109.46996 * 296.04375 * 1 2 3 20 20 H 1.08994 * 109.47160 * 56.05022 * 1 2 3 21 21 H 1.09001 * 109.46891 * 176.05059 * 1 2 3 22 22 H 1.09005 * 109.46821 * 183.95241 * 3 2 1 23 23 H 1.09001 * 109.47105 * 303.95076 * 3 2 1 24 24 H 1.09002 * 109.47208 * 63.95829 * 3 2 1 25 25 H 1.08998 * 109.46852 * 306.04287 * 4 2 1 26 26 H 1.09005 * 109.46955 * 186.05020 * 4 2 1 27 27 H 1.08997 * 109.47185 * 60.00080 * 5 4 2 28 28 H 1.08993 * 109.47221 * 299.99770 * 5 4 2 29 29 H 0.97001 * 119.99775 * 175.34371 * 10 9 7 30 30 H 1.08996 * 112.53615 * 4.25334 * 15 6 5 31 31 H 1.09008 * 113.14670 * 32.90597 * 16 15 6 32 32 H 1.08998 * 113.15430 * 162.34842 * 16 15 6 33 33 H 1.08995 * 113.14918 * 197.61674 * 18 15 6 34 34 H 1.09003 * 113.14633 * 327.05478 * 18 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6315 -2.2426 0.9703 6 7 2.1571 -3.0066 2.1046 7 6 3.4142 -3.5459 2.0432 8 1 4.0574 -3.5165 2.9103 9 6 3.8619 -4.1306 0.8664 10 7 2.9992 -4.4832 -0.0629 11 14 5.6888 -4.4167 0.6018 12 1 6.4420 -3.9361 1.7880 13 1 5.9400 -5.8679 0.4113 14 1 6.1367 -3.6743 -0.6038 15 6 1.3376 -3.1934 3.3045 16 6 2.0383 -2.7420 4.5880 17 16 2.9126 -4.3297 4.6666 18 6 1.3391 -4.6361 3.8155 19 1 -0.3633 0.4512 0.9233 20 1 -0.3633 0.5739 -0.8524 21 1 -0.3633 -1.0252 -0.0708 22 1 3.0827 1.3433 -0.0708 23 1 1.5897 1.9164 -0.8525 24 1 1.7044 1.8724 0.9233 25 1 1.5611 -0.3872 2.0628 26 1 3.0798 -0.6610 1.1757 27 1 2.0658 -2.6213 0.0452 28 1 0.5473 -2.3475 0.9323 29 1 3.3155 -4.8291 -0.9121 30 1 0.3356 -2.7788 3.1947 31 1 2.7048 -1.8928 4.4365 32 1 1.3513 -2.5895 5.4204 33 1 0.5173 -4.8494 4.4991 34 1 1.4191 -5.3735 3.0167 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261126004.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:47 Heat of formation + Delta-G solvation = 60.542937 kcal Electronic energy + Delta-G solvation = -15010.643683 eV Core-core repulsion = 12685.882202 eV Total energy + Delta-G solvation = -2324.761481 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -37.57291 -36.36557 -32.99663 -30.68577 -27.82705 -27.16154 -25.37196 -24.53720 -22.64929 -20.39321 -19.70410 -16.53146 -15.79874 -15.17279 -14.88894 -14.69126 -14.15456 -14.00007 -13.48807 -12.62793 -12.45409 -12.11150 -12.05284 -11.96759 -11.91220 -11.36503 -11.15274 -10.97648 -10.85197 -10.64790 -10.14201 -10.01920 -9.90316 -9.54410 -9.08294 -8.41717 -7.85513 -6.81304 -6.15273 -5.63281 -3.32126 2.77424 2.92512 3.44675 3.53239 3.57408 4.37257 4.63012 5.24238 5.32134 5.51421 5.57162 5.65726 5.74739 5.82586 5.88663 5.95225 6.07912 6.10435 6.12830 6.22984 6.25930 6.41805 6.43397 6.59879 6.69678 7.07731 7.48463 7.55667 7.86652 8.09940 8.63823 9.29807 9.84800 10.39513 11.32325 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.019115 B = 0.011866 C = 0.008477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.434070 B = 2359.113769 C = 3302.374998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.545 5.545 3 C 0.028 3.972 4 C 0.041 3.959 5 C 0.153 3.847 6 N -0.555 5.555 7 C -0.251 4.251 8 H 0.091 0.909 9 C 0.014 3.986 10 N -0.892 5.892 11 Si 0.893 3.107 12 H -0.275 1.275 13 H -0.292 1.292 14 H -0.290 1.290 15 C 0.172 3.828 16 C -0.105 4.105 17 S -0.293 6.293 18 C -0.091 4.091 19 H 0.016 0.984 20 H 0.057 0.943 21 H 0.073 0.927 22 H 0.064 0.936 23 H 0.059 0.941 24 H 0.016 0.984 25 H 0.013 0.987 26 H 0.071 0.929 27 H 0.106 0.894 28 H 0.024 0.976 29 H 0.251 0.749 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.537 7.149 3.385 9.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.269 5.269 3 C -0.121 4.121 4 C -0.088 4.088 5 C 0.027 3.973 6 N -0.272 5.272 7 C -0.381 4.381 8 H 0.108 0.892 9 C -0.186 4.186 10 N -0.535 5.535 11 Si 0.723 3.277 12 H -0.200 1.200 13 H -0.219 1.219 14 H -0.217 1.217 15 C 0.060 3.940 16 C -0.256 4.256 17 S -0.068 6.068 18 C -0.242 4.242 19 H 0.035 0.965 20 H 0.076 0.924 21 H 0.091 0.909 22 H 0.083 0.917 23 H 0.078 0.922 24 H 0.035 0.965 25 H 0.031 0.969 26 H 0.089 0.911 27 H 0.124 0.876 28 H 0.043 0.957 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.124 6.135 3.254 8.076 hybrid contribution -0.261 0.691 0.287 0.792 sum -4.385 6.825 3.540 8.852 Atomic orbital electron populations 1.22376 0.88325 1.02349 0.99158 1.61951 1.07273 1.12651 1.45025 1.22334 1.00731 0.89681 0.99331 1.22916 1.00107 0.97239 0.88584 1.20953 0.95208 0.86607 0.94522 1.43722 1.14273 1.57128 1.12035 1.19756 0.89248 1.30060 0.99022 0.89202 1.25236 0.97423 0.96978 0.98950 1.70024 1.32455 1.44408 1.06651 0.86365 0.86248 0.77355 0.77717 1.19982 1.21896 1.21679 1.20965 0.93856 0.90855 0.88296 1.25133 1.00002 0.98220 1.02290 1.88376 1.28220 1.12712 1.77491 1.24878 0.93166 1.05010 1.01134 0.96524 0.92389 0.90870 0.91677 0.92216 0.96522 0.96853 0.91058 0.87590 0.95734 0.93888 0.90783 0.89607 0.89990 0.90147 0.88414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.32 60.06 0.56 0.95 16 2 N -0.54 -9.47 5.02 -251.25 -1.26 -10.73 16 3 C 0.03 0.40 9.57 60.07 0.57 0.98 16 4 C 0.04 0.80 5.28 -3.82 -0.02 0.78 16 5 C 0.15 3.40 5.22 -4.04 -0.02 3.38 16 6 N -0.55 -12.89 2.62 -177.34 -0.46 -13.35 16 7 C -0.25 -6.54 7.55 -15.06 -0.11 -6.65 16 8 H 0.09 2.42 5.62 -41.22 -0.23 2.19 16 9 C 0.01 0.37 5.02 -17.43 -0.09 0.29 16 10 N -0.89 -25.30 11.44 55.49 0.63 -24.66 16 11 Si 0.89 22.08 29.59 -169.99 -5.03 17.05 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 14 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 15 C 0.17 3.38 4.44 -67.88 -0.30 3.08 16 16 C -0.10 -1.90 7.53 37.18 0.28 -1.62 16 17 S -0.29 -6.15 21.22 -107.50 -2.28 -8.43 16 18 C -0.09 -1.77 7.41 37.18 0.28 -1.50 16 19 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 20 H 0.06 0.75 8.12 -51.93 -0.42 0.32 16 21 H 0.07 1.13 6.47 -51.93 -0.34 0.80 16 22 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 23 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 24 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.01 0.25 8.12 -51.93 -0.42 -0.17 16 26 H 0.07 1.52 8.06 -51.93 -0.42 1.10 16 27 H 0.11 2.77 5.58 -51.93 -0.29 2.48 16 28 H 0.02 0.51 6.38 -51.93 -0.33 0.18 16 29 H 0.25 6.97 8.32 -40.82 -0.34 6.63 16 30 H 0.07 1.29 7.96 -51.93 -0.41 0.88 16 31 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.10 2.19 8.14 -51.93 -0.42 1.77 16 LS Contribution 282.30 15.07 4.25 4.25 Total: -1.00 -28.35 282.30 -8.38 -36.73 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -5.38 Total: -0.54 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: 1.15 Total: -0.32 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -1.09 Total: -48.75 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Atomic # 16 Polarization: -6.15 SS G_CDS: -2.28 Total: -8.43 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.35 -8.38 -36.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261126004.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.276 kcal (2) G-P(sol) polarization free energy of solvation -28.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds