Wall clock time and date at job start Mon Mar 30 2020 03:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46905 * 110.99696 * 2 1 4 4 C 1.46905 * 111.00056 * 123.95344 * 2 1 3 5 5 C 1.52998 * 109.46936 * 66.04724 * 4 2 1 6 6 N 1.46508 * 109.46797 * 179.97438 * 5 4 2 7 7 C 1.36932 * 120.00151 * 270.00065 * 6 5 4 8 8 H 1.08002 * 120.00085 * 139.58206 * 7 6 5 9 9 C 1.38815 * 120.00117 * 319.58172 * 7 6 5 10 10 N 1.31618 * 119.99645 * 342.31383 * 9 7 6 11 11 Si 1.86794 * 120.00348 * 162.31450 * 9 7 6 12 12 H 1.48506 * 109.46987 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47141 * 119.99463 * 11 9 7 14 14 H 1.48498 * 109.47477 * 239.99981 * 11 9 7 15 15 C 1.46497 * 119.99453 * 89.99946 * 6 5 4 16 16 C 1.53045 * 113.15368 * 234.43358 * 15 6 5 17 17 S 1.81428 * 89.93359 * 277.62801 * 16 15 6 18 18 C 1.53051 * 113.15015 * 134.06625 * 15 6 5 19 19 H 1.09003 * 109.46996 * 296.04375 * 1 2 3 20 20 H 1.08994 * 109.47160 * 56.05022 * 1 2 3 21 21 H 1.09001 * 109.46891 * 176.05059 * 1 2 3 22 22 H 1.09005 * 109.46821 * 183.95241 * 3 2 1 23 23 H 1.09001 * 109.47105 * 303.95076 * 3 2 1 24 24 H 1.09002 * 109.47208 * 63.95829 * 3 2 1 25 25 H 1.08998 * 109.46852 * 306.04287 * 4 2 1 26 26 H 1.09005 * 109.46955 * 186.05020 * 4 2 1 27 27 H 1.08997 * 109.47185 * 60.00080 * 5 4 2 28 28 H 1.08993 * 109.47221 * 299.99770 * 5 4 2 29 29 H 0.97001 * 119.99775 * 175.34371 * 10 9 7 30 30 H 1.08996 * 112.53615 * 4.25334 * 15 6 5 31 31 H 1.09008 * 113.14670 * 32.90597 * 16 15 6 32 32 H 1.08998 * 113.15430 * 162.34842 * 16 15 6 33 33 H 1.08995 * 113.14918 * 197.61674 * 18 15 6 34 34 H 1.09003 * 113.14633 * 327.05478 * 18 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6315 -2.2426 0.9703 6 7 2.1571 -3.0066 2.1046 7 6 3.4142 -3.5459 2.0432 8 1 4.0574 -3.5165 2.9103 9 6 3.8619 -4.1306 0.8664 10 7 2.9992 -4.4832 -0.0629 11 14 5.6888 -4.4167 0.6018 12 1 6.4420 -3.9361 1.7880 13 1 5.9400 -5.8679 0.4113 14 1 6.1367 -3.6743 -0.6038 15 6 1.3376 -3.1934 3.3045 16 6 2.0383 -2.7420 4.5880 17 16 2.9126 -4.3297 4.6666 18 6 1.3391 -4.6361 3.8155 19 1 -0.3633 0.4512 0.9233 20 1 -0.3633 0.5739 -0.8524 21 1 -0.3633 -1.0252 -0.0708 22 1 3.0827 1.3433 -0.0708 23 1 1.5897 1.9164 -0.8525 24 1 1.7044 1.8724 0.9233 25 1 1.5611 -0.3872 2.0628 26 1 3.0798 -0.6610 1.1757 27 1 2.0658 -2.6213 0.0452 28 1 0.5473 -2.3475 0.9323 29 1 3.3155 -4.8291 -0.9121 30 1 0.3356 -2.7788 3.1947 31 1 2.7048 -1.8928 4.4365 32 1 1.3513 -2.5895 5.4204 33 1 0.5173 -4.8494 4.4991 34 1 1.4191 -5.3735 3.0167 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261126004.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:47 Heat of formation + Delta-G solvation = 42.362832 kcal Electronic energy + Delta-G solvation = -15011.432031 eV Core-core repulsion = 12685.882202 eV Total energy + Delta-G solvation = -2325.549829 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.16453 -37.80968 -34.80290 -32.51930 -29.47908 -28.35015 -26.89332 -26.35208 -24.17682 -21.89427 -21.43475 -18.34273 -17.50259 -16.86164 -16.43336 -16.11115 -15.78468 -15.54580 -15.10466 -14.19088 -13.97896 -13.82050 -13.55064 -13.42445 -13.16688 -12.90185 -12.83252 -12.60882 -12.46777 -12.35290 -12.00065 -11.88092 -11.55696 -11.29328 -10.66434 -10.41202 -9.15597 -8.65559 -7.98794 -7.58445 -5.36068 1.27458 1.33282 1.44401 1.49133 1.57454 2.56404 3.08451 3.38099 3.67985 3.94968 4.32719 4.38609 4.39311 4.47523 4.56687 4.57175 4.62637 4.76991 4.79263 4.87668 4.91140 4.92755 5.02673 5.06906 5.13201 5.42979 5.86480 5.99705 6.27579 6.30876 6.67472 7.31401 7.92352 8.42293 9.25497 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.019115 B = 0.011866 C = 0.008477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.434070 B = 2359.113769 C = 3302.374998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.568 5.568 3 C 0.029 3.971 4 C 0.061 3.939 5 C 0.159 3.841 6 N -0.572 5.572 7 C -0.232 4.232 8 H 0.081 0.919 9 C -0.035 4.035 10 N -0.920 5.920 11 Si 0.935 3.065 12 H -0.273 1.273 13 H -0.300 1.300 14 H -0.292 1.292 15 C 0.162 3.838 16 C -0.074 4.074 17 S -0.363 6.363 18 C -0.073 4.073 19 H 0.030 0.970 20 H 0.078 0.922 21 H 0.061 0.939 22 H 0.057 0.943 23 H 0.081 0.919 24 H 0.028 0.972 25 H 0.025 0.975 26 H 0.045 0.955 27 H 0.065 0.935 28 H 0.035 0.965 29 H 0.244 0.756 30 H 0.108 0.892 31 H 0.077 0.923 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.083 8.794 4.537 12.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.293 5.293 3 C -0.119 4.119 4 C -0.069 4.069 5 C 0.033 3.967 6 N -0.289 5.289 7 C -0.363 4.363 8 H 0.099 0.901 9 C -0.231 4.231 10 N -0.565 5.565 11 Si 0.766 3.234 12 H -0.198 1.198 13 H -0.228 1.228 14 H -0.219 1.219 15 C 0.052 3.948 16 C -0.225 4.225 17 S -0.139 6.139 18 C -0.223 4.223 19 H 0.048 0.952 20 H 0.097 0.903 21 H 0.080 0.920 22 H 0.076 0.924 23 H 0.099 0.901 24 H 0.047 0.953 25 H 0.043 0.957 26 H 0.063 0.937 27 H 0.083 0.917 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.126 0.874 31 H 0.096 0.904 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.675 7.802 4.428 10.615 hybrid contribution 0.136 0.233 -0.021 0.271 sum -5.538 8.035 4.406 10.707 Atomic orbital electron populations 1.22389 0.86584 1.02178 1.00787 1.61882 1.09031 1.14280 1.44107 1.22365 1.00365 0.88272 1.00874 1.22501 0.98546 0.95855 0.90006 1.20760 0.95282 0.87993 0.92643 1.43864 1.14116 1.57580 1.13386 1.19767 0.90564 1.27886 0.98080 0.90113 1.25706 0.99603 0.98278 0.99534 1.70131 1.33202 1.46455 1.06758 0.85694 0.83847 0.76516 0.77376 1.19778 1.22771 1.21879 1.21200 0.95047 0.91290 0.87298 1.25059 0.99425 0.95462 1.02535 1.88733 1.30785 1.16495 1.77884 1.24899 0.93107 1.03790 1.00499 0.95168 0.90308 0.92048 0.92437 0.90070 0.95347 0.95655 0.93679 0.91656 0.94659 0.94696 0.87404 0.90377 0.85589 0.85841 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 9.32 127.69 1.19 1.96 16 2 N -0.57 -18.75 5.02 -948.82 -4.76 -23.51 16 3 C 0.03 0.78 9.57 127.69 1.22 2.00 16 4 C 0.06 2.29 5.28 86.30 0.46 2.75 16 5 C 0.16 6.98 5.22 86.38 0.45 7.43 16 6 N -0.57 -26.08 2.62 -714.99 -1.87 -27.96 16 7 C -0.23 -12.14 7.55 84.03 0.63 -11.51 16 8 H 0.08 4.38 5.62 -10.07 -0.06 4.32 16 9 C -0.04 -1.95 5.02 84.86 0.43 -1.52 16 10 N -0.92 -53.59 11.44 21.65 0.25 -53.34 16 11 Si 0.94 46.43 29.59 68.60 2.03 48.46 16 12 H -0.27 -13.28 7.11 99.48 0.71 -12.57 16 13 H -0.30 -15.15 7.11 99.48 0.71 -14.44 16 14 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 15 C 0.16 5.90 4.44 45.02 0.20 6.10 16 16 C -0.07 -2.43 7.53 72.00 0.54 -1.89 16 17 S -0.36 -14.81 21.22 -56.49 -1.20 -16.01 16 18 C -0.07 -2.67 7.41 72.00 0.53 -2.13 16 19 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 20 H 0.08 1.78 8.12 -2.39 -0.02 1.76 16 21 H 0.06 1.78 6.47 -2.39 -0.02 1.76 16 22 H 0.06 1.58 8.12 -2.38 -0.02 1.56 16 23 H 0.08 1.79 8.12 -2.39 -0.02 1.77 16 24 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.03 0.89 8.12 -2.39 -0.02 0.87 16 26 H 0.04 1.91 8.06 -2.38 -0.02 1.89 16 27 H 0.07 3.48 5.58 -2.39 -0.01 3.47 16 28 H 0.04 1.44 6.38 -2.39 -0.02 1.42 16 29 H 0.24 14.01 8.32 -92.71 -0.77 13.24 16 30 H 0.11 3.27 7.96 -2.39 -0.02 3.25 16 31 H 0.08 2.73 8.14 -2.38 -0.02 2.71 16 32 H 0.13 3.10 8.14 -2.39 -0.02 3.08 16 33 H 0.12 3.48 8.14 -2.39 -0.02 3.46 16 34 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -62.31 282.30 1.12 -61.19 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: 1.02 Total: 7.98 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 5.66 Total: 3.19 kcal Atomic # 7 Polarization: -98.42 SS G_CDS: -6.39 Total: -104.81 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Atomic # 16 Polarization: -14.81 SS G_CDS: -1.20 Total: -16.01 kcal Total: -62.31 1.12 -61.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261126004.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.554 kcal (2) G-P(sol) polarization free energy of solvation -62.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds