Wall clock time and date at job start Mon Mar 30 2020 03:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00361 * 2 1 4 4 H 1.48505 * 109.47025 * 269.99517 * 3 2 1 5 5 H 1.48504 * 109.47440 * 29.99222 * 3 2 1 6 6 H 1.48502 * 109.47481 * 149.99666 * 3 2 1 7 7 C 1.37875 * 119.99836 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00265 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99954 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47250 * 179.97438 * 9 7 2 11 11 H 1.09003 * 110.43520 * 52.45603 * 10 9 7 12 12 C 1.54889 * 110.60086 * 289.84154 * 10 9 7 13 13 C 1.54886 * 102.75058 * 203.32388 * 12 10 9 14 14 C 1.54267 * 104.19485 * 37.94062 * 13 12 10 15 15 H 1.08997 * 110.07459 * 95.69634 * 14 13 12 16 16 C 1.50706 * 110.02971 * 217.10832 * 14 13 12 17 17 C 1.38233 * 120.00109 * 56.89018 * 16 14 13 18 18 C 1.38238 * 119.99754 * 179.76611 * 17 16 14 19 19 C 1.38234 * 120.00038 * 0.48818 * 18 17 16 20 20 C 1.38238 * 120.00047 * 359.78460 * 19 18 17 21 21 C 1.38235 * 120.00108 * 359.96171 * 20 19 18 22 22 C 1.53878 * 106.60080 * 336.39021 * 14 13 12 23 23 H 0.97003 * 119.99456 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.46801 * 59.99534 * 9 7 2 25 25 H 1.08998 * 109.46835 * 299.99808 * 9 7 2 26 26 H 1.09008 * 110.75158 * 321.63857 * 12 10 9 27 27 H 1.08994 * 110.75683 * 84.81782 * 12 10 9 28 28 H 1.09003 * 110.48421 * 279.26541 * 13 12 10 29 29 H 1.08995 * 110.48720 * 156.61889 * 13 12 10 30 30 H 1.08004 * 119.99934 * 0.02562 * 17 16 14 31 31 H 1.07999 * 119.99931 * 180.25459 * 18 17 16 32 32 H 1.08001 * 120.00294 * 179.76932 * 19 18 17 33 33 H 1.08000 * 120.00559 * 179.97438 * 20 19 18 34 34 H 1.07999 * 120.00165 * 179.97438 * 21 20 19 35 35 H 1.09000 * 110.03354 * 119.28598 * 22 14 13 36 36 H 1.09003 * 110.03265 * 240.66895 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6621 0.0005 11 1 2.9655 -3.5470 0.8104 12 6 2.9732 -3.7566 -1.3632 13 6 3.4241 -5.2377 -1.4081 14 6 2.2513 -6.0097 -0.7692 15 1 1.5855 -6.3879 -1.5449 16 6 2.7768 -7.1521 0.0616 17 6 3.6709 -6.9069 1.0870 18 6 4.1492 -7.9543 1.8521 19 6 3.7413 -9.2478 1.5852 20 6 2.8516 -9.4936 0.5561 21 6 2.3692 -8.4457 -0.2056 22 6 1.5016 -5.0080 0.1265 23 1 -0.4849 0.8401 -0.0004 24 1 0.6246 -2.5570 -0.8896 25 1 0.6239 -2.5567 0.8903 26 1 2.2889 -3.5361 -2.1826 27 1 3.8329 -3.0872 -1.3893 28 1 4.3349 -5.3770 -0.8257 29 1 3.5761 -5.5592 -2.4384 30 1 3.9924 -5.8967 1.2931 31 1 4.8445 -7.7623 2.6559 32 1 4.1178 -10.0665 2.1805 33 1 2.5331 -10.5042 0.3473 34 1 1.6744 -8.6378 -1.0099 35 1 0.4722 -4.8993 -0.2151 36 1 1.5172 -5.3485 1.1619 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261128617.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:19 Heat of formation + Delta-G solvation = -9.249602 kcal Electronic energy + Delta-G solvation = -15429.731912 eV Core-core repulsion = 13070.040392 eV Total energy + Delta-G solvation = -2359.691520 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.61318 -37.29973 -33.24950 -31.60844 -30.80201 -29.35147 -27.69077 -25.65272 -22.69852 -22.36767 -21.74297 -19.47860 -18.80060 -16.81907 -16.27516 -15.32503 -15.02689 -14.50981 -14.23479 -13.72198 -13.26734 -13.10606 -12.79262 -12.61009 -12.14794 -11.70085 -11.29166 -11.22597 -10.99109 -10.87281 -10.70553 -10.40448 -10.32593 -10.13956 -10.03233 -9.53142 -9.11780 -8.96298 -8.83416 -8.45311 -8.29974 -5.95335 -3.96746 1.46372 1.48108 3.34016 3.40416 3.43599 3.87467 4.49490 4.84611 4.92571 5.05222 5.18810 5.25692 5.31457 5.40470 5.56657 5.64006 5.65383 5.98817 6.03608 6.12952 6.13252 6.20242 6.26499 6.34500 6.47355 6.53447 6.58082 6.64459 6.74566 6.90186 6.95686 7.08820 7.10960 7.25880 7.73219 7.89319 8.05375 8.49167 9.10177 9.66853 11.16049 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.051524 B = 0.005000 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.304076 B = 5598.477515 C = 5675.235039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.029 3.971 10 C -0.082 4.082 11 H 0.058 0.942 12 C -0.107 4.107 13 C -0.118 4.118 14 C -0.057 4.057 15 H 0.073 0.927 16 C -0.060 4.060 17 C -0.113 4.113 18 C -0.120 4.120 19 C -0.135 4.135 20 C -0.122 4.122 21 C -0.124 4.124 22 C -0.113 4.113 23 H 0.259 0.741 24 H 0.016 0.984 25 H 0.014 0.986 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.125 0.875 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.063 0.937 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.291 -16.274 0.150 17.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.552 4.552 8 H 0.073 0.927 9 C -0.008 4.008 10 C -0.100 4.100 11 H 0.076 0.924 12 C -0.144 4.144 13 C -0.155 4.155 14 C -0.076 4.076 15 H 0.091 0.909 16 C -0.060 4.060 17 C -0.131 4.131 18 C -0.138 4.138 19 C -0.153 4.153 20 C -0.140 4.140 21 C -0.142 4.142 22 C -0.151 4.151 23 H 0.069 0.931 24 H 0.035 0.965 25 H 0.032 0.968 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.143 0.857 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.082 0.918 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.136 -16.157 0.156 17.284 hybrid contribution 0.382 0.909 0.043 0.987 sum 6.518 -15.248 0.199 16.584 Atomic orbital electron populations 1.69968 1.06031 1.26431 1.51255 1.25017 0.94798 0.99135 0.95560 0.86650 0.79879 0.83759 0.78038 1.20748 1.21317 1.19941 1.21261 0.92963 0.91034 1.49930 0.92747 1.19141 0.93559 0.91085 0.97050 1.22049 0.97851 0.94199 0.95931 0.92352 1.22433 0.99963 0.93425 0.98602 1.22533 0.96976 0.96559 0.99444 1.20894 0.97131 0.93102 0.96468 0.90887 1.20080 0.95736 0.94371 0.95798 1.21114 0.97225 0.99399 0.95340 1.21142 1.00174 0.92910 0.99597 1.21066 0.98958 0.96764 0.98470 1.21081 0.98011 0.98726 0.96227 1.21099 1.00610 0.92377 1.00132 1.22376 0.99351 0.95027 0.98300 0.93120 0.96529 0.96761 0.91762 0.91928 0.91926 0.92501 0.85707 0.86359 0.86611 0.86532 0.86357 0.91811 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.51 -14.44 8.77 -34.44 -0.30 -14.74 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.74 4.33 -27.88 -0.12 0.62 16 10 C -0.08 -1.67 2.79 -88.96 -0.25 -1.92 16 11 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 12 C -0.11 -1.96 6.00 -24.74 -0.15 -2.11 16 13 C -0.12 -1.77 6.26 -25.07 -0.16 -1.93 16 14 C -0.06 -0.86 3.13 -90.65 -0.28 -1.14 16 15 H 0.07 1.03 7.91 -51.93 -0.41 0.62 16 16 C -0.06 -0.83 4.68 -104.62 -0.49 -1.32 16 17 C -0.11 -1.54 8.14 -39.58 -0.32 -1.86 16 18 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 19 C -0.13 -1.50 10.05 -39.58 -0.40 -1.90 16 20 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 21 C -0.12 -1.55 9.68 -39.58 -0.38 -1.94 16 22 C -0.11 -1.98 5.82 -25.61 -0.15 -2.12 16 23 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.02 0.45 8.02 -51.93 -0.42 0.03 16 25 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 1.23 7.97 -51.92 -0.41 0.82 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.06 0.91 6.84 -51.93 -0.36 0.56 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.12 1.73 7.71 -52.48 -0.40 1.33 16 31 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.12 1.29 7.96 -52.49 -0.42 0.88 16 35 H 0.06 1.15 7.84 -51.93 -0.41 0.75 16 36 H 0.06 0.97 7.31 -51.93 -0.38 0.59 16 LS Contribution 293.72 15.07 4.43 4.43 Total: -1.00 -29.90 293.72 -9.46 -39.36 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -5.71 Total: -1.64 kcal Atomic # 6 Polarization: -28.60 SS G_CDS: -3.90 Total: -32.49 kcal Atomic # 7 Polarization: -27.14 SS G_CDS: 0.74 Total: -26.40 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.90 -9.46 -39.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261128617.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.108 kcal (2) G-P(sol) polarization free energy of solvation -29.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds