Wall clock time and date at job start Mon Mar 30 2020 03:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99577 * 2 1 4 4 H 1.48497 * 109.46969 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47485 * 300.00198 * 3 2 1 6 6 H 1.48500 * 109.46928 * 60.00366 * 3 2 1 7 7 C 1.37870 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99907 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00307 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46964 * 60.00490 * 9 7 2 11 11 C 1.52997 * 109.47265 * 300.00039 * 9 7 2 12 12 C 1.53002 * 109.47092 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.46963 * 60.00194 * 12 11 9 14 14 C 1.53000 * 109.46886 * 299.99499 * 13 12 11 15 15 H 1.09002 * 109.47398 * 300.00496 * 14 13 12 16 16 C 1.50703 * 109.46912 * 180.02562 * 14 13 12 17 17 C 1.38237 * 119.99747 * 299.72651 * 16 14 13 18 18 C 1.38236 * 119.99852 * 179.76554 * 17 16 14 19 19 C 1.38238 * 119.99556 * 0.50989 * 18 17 16 20 20 C 1.38230 * 120.00389 * 359.74301 * 19 18 17 21 21 C 1.38232 * 120.00112 * 120.00202 * 16 14 13 22 22 C 1.53002 * 109.47233 * 60.00670 * 14 13 12 23 23 H 0.96999 * 120.00366 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47045 * 299.99841 * 11 9 7 25 25 H 1.09000 * 109.47140 * 59.99748 * 11 9 7 26 26 H 1.09000 * 109.46497 * 180.02562 * 12 11 9 27 27 H 1.09002 * 109.47067 * 299.99853 * 12 11 9 28 28 H 1.09001 * 109.46652 * 179.97438 * 13 12 11 29 29 H 1.08992 * 109.47514 * 59.99933 * 13 12 11 30 30 H 1.08003 * 120.00234 * 0.02562 * 17 16 14 31 31 H 1.07995 * 120.00072 * 180.23158 * 18 17 16 32 32 H 1.07999 * 119.99750 * 179.72242 * 19 18 17 33 33 H 1.08003 * 120.00407 * 179.97438 * 20 19 18 34 34 H 1.08005 * 120.00133 * 0.02562 * 21 16 14 35 35 H 1.09002 * 109.47075 * 59.99068 * 22 14 13 36 36 H 1.08996 * 109.47407 * 180.02562 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6241 -2.5567 -0.8904 11 6 0.3719 -2.5805 1.2490 12 6 -0.3935 -3.9053 1.2486 13 6 0.6004 -5.0685 1.2477 14 6 1.4795 -4.9871 -0.0019 15 1 0.8524 -5.0442 -0.8917 16 6 2.4581 -6.1332 -0.0031 17 6 3.3663 -6.2676 1.0303 18 6 4.2607 -7.3216 1.0317 19 6 4.2538 -8.2352 -0.0058 20 6 3.3491 -8.0978 -1.0418 21 6 2.4512 -7.0468 -1.0405 22 6 2.2450 -3.6624 -0.0016 23 1 -0.4850 0.8400 0.0004 24 1 0.9989 -2.5230 2.1388 25 1 -0.3364 -1.7520 1.2495 26 1 -1.0201 -3.9630 2.1386 27 1 -1.0205 -3.9624 0.3589 28 1 0.0551 -6.0123 1.2479 29 1 1.2274 -5.0114 2.1374 30 1 3.3743 -5.5516 1.8388 31 1 4.9678 -7.4288 1.8409 32 1 4.9556 -9.0562 -0.0070 33 1 3.3440 -8.8114 -1.8526 34 1 1.7449 -6.9390 -1.8504 35 1 2.8720 -3.6052 0.8882 36 1 2.8709 -3.6042 -0.8920 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261131402.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:08 Heat of formation + Delta-G solvation = -9.562833 kcal Electronic energy + Delta-G solvation = -15796.637328 eV Core-core repulsion = 13436.932225 eV Total energy + Delta-G solvation = -2359.705103 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.41199 -37.15182 -33.18317 -31.53679 -30.68363 -29.76867 -27.93075 -24.75291 -22.89219 -22.25811 -21.05612 -20.10462 -18.50874 -16.78334 -16.05127 -14.95937 -14.75315 -14.53086 -13.82448 -13.35603 -13.27941 -12.99209 -12.68007 -12.63378 -12.18634 -11.60321 -11.52875 -10.98916 -10.94155 -10.79761 -10.55640 -10.43946 -10.08554 -10.01718 -9.79037 -9.34253 -8.88168 -8.71238 -8.65677 -8.31605 -8.21148 -5.93863 -3.99878 1.61141 1.61764 3.31600 3.39764 3.43919 4.02700 4.47244 5.03623 5.09156 5.17951 5.33878 5.35376 5.53732 5.69550 5.74944 5.77238 5.92481 6.12443 6.26994 6.33059 6.37912 6.45650 6.52480 6.66942 6.67408 6.69008 6.76933 6.83180 6.93945 7.09680 7.20371 7.25492 7.32523 7.58867 7.80565 8.07265 8.21566 8.52285 9.04634 9.64610 11.11568 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.037207 B = 0.006308 C = 0.005822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.371117 B = 4438.049065 C = 4808.326349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.510 4.510 8 H 0.054 0.946 9 C 0.049 3.951 10 H 0.024 0.976 11 C -0.110 4.110 12 C -0.119 4.119 13 C -0.101 4.101 14 C -0.053 4.053 15 H 0.071 0.929 16 C -0.058 4.058 17 C -0.114 4.114 18 C -0.122 4.122 19 C -0.137 4.137 20 C -0.122 4.122 21 C -0.123 4.123 22 C -0.095 4.095 23 H 0.258 0.742 24 H 0.032 0.968 25 H 0.090 0.910 26 H 0.042 0.958 27 H 0.051 0.949 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.122 0.878 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.049 0.951 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.789 -13.295 1.027 13.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.716 3.284 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.549 4.549 8 H 0.072 0.928 9 C 0.031 3.969 10 H 0.042 0.958 11 C -0.148 4.148 12 C -0.157 4.157 13 C -0.139 4.139 14 C -0.071 4.071 15 H 0.089 0.911 16 C -0.058 4.058 17 C -0.132 4.132 18 C -0.140 4.140 19 C -0.155 4.155 20 C -0.140 4.140 21 C -0.141 4.141 22 C -0.132 4.132 23 H 0.068 0.932 24 H 0.051 0.949 25 H 0.108 0.892 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.140 0.860 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.067 0.933 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.643 -13.165 1.026 13.698 hybrid contribution 0.501 0.892 -0.015 1.023 sum 4.144 -12.273 1.010 12.993 Atomic orbital electron populations 1.69892 1.05830 1.26108 1.51180 1.24957 0.94818 0.98943 0.95288 0.86607 0.80202 0.84108 0.77509 1.19867 1.21108 1.21108 1.21268 0.92897 0.90759 1.49941 0.92807 1.18655 0.92618 0.91316 0.94350 0.95777 1.21615 0.99505 0.95093 0.98608 1.21633 0.97412 0.96656 0.99977 1.21528 0.97499 0.97870 0.96995 1.20349 0.94814 0.93089 0.98893 0.91105 1.20204 0.96187 0.95706 0.93730 1.21085 0.95424 0.97845 0.98834 1.21109 0.99070 0.95243 0.98536 1.21026 0.99656 0.99687 0.95172 1.21070 0.96235 0.98247 0.98497 1.21116 0.99455 0.94995 0.98561 1.21675 0.98425 0.92901 1.00214 0.93196 0.94927 0.89196 0.93902 0.92993 0.93631 0.92568 0.86000 0.86557 0.86759 0.86629 0.86336 0.93258 0.93587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.51 11.32 55.43 0.63 -24.88 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 7 C -0.51 -14.08 8.56 -34.44 -0.29 -14.37 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.05 1.21 2.10 -91.77 -0.19 1.02 16 10 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 11 C -0.11 -2.58 4.98 -26.73 -0.13 -2.72 16 12 C -0.12 -2.30 5.92 -26.73 -0.16 -2.46 16 13 C -0.10 -1.74 5.02 -26.73 -0.13 -1.88 16 14 C -0.05 -0.94 2.36 -91.77 -0.22 -1.16 16 15 H 0.07 1.27 7.88 -51.93 -0.41 0.86 16 16 C -0.06 -0.93 4.78 -104.62 -0.50 -1.43 16 17 C -0.11 -1.71 8.71 -39.58 -0.34 -2.06 16 18 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 16 19 C -0.14 -1.69 10.05 -39.58 -0.40 -2.09 16 20 C -0.12 -1.56 10.05 -39.59 -0.40 -1.95 16 21 C -0.12 -1.78 9.67 -39.59 -0.38 -2.16 16 22 C -0.09 -1.98 4.24 -26.73 -0.11 -2.09 16 23 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 24 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.95 7.40 -51.93 -0.38 0.56 16 30 H 0.12 1.81 7.11 -52.48 -0.37 1.44 16 31 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 32 H 0.11 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 34 H 0.12 1.55 7.95 -52.48 -0.42 1.14 16 35 H 0.05 1.03 7.38 -51.93 -0.38 0.64 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 286.83 15.07 4.32 4.32 Total: -1.00 -28.36 286.83 -9.46 -37.82 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -5.63 Total: 0.09 kcal Atomic # 6 Polarization: -29.99 SS G_CDS: -3.76 Total: -33.75 kcal Atomic # 7 Polarization: -25.51 SS G_CDS: 0.63 Total: -24.88 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.36 -9.46 -37.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261131402.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.257 kcal (2) G-P(sol) polarization free energy of solvation -28.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds