Wall clock time and date at job start Mon Mar 30 2020 03:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99577 * 2 1 4 4 H 1.48497 * 109.46969 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47485 * 300.00198 * 3 2 1 6 6 H 1.48500 * 109.46928 * 60.00366 * 3 2 1 7 7 C 1.37870 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99907 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00307 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46964 * 60.00490 * 9 7 2 11 11 C 1.52997 * 109.47265 * 300.00039 * 9 7 2 12 12 C 1.53002 * 109.47092 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.46963 * 60.00194 * 12 11 9 14 14 C 1.53000 * 109.46886 * 299.99499 * 13 12 11 15 15 H 1.09002 * 109.47398 * 300.00496 * 14 13 12 16 16 C 1.50703 * 109.46912 * 180.02562 * 14 13 12 17 17 C 1.38237 * 119.99747 * 299.72651 * 16 14 13 18 18 C 1.38236 * 119.99852 * 179.76554 * 17 16 14 19 19 C 1.38238 * 119.99556 * 0.50989 * 18 17 16 20 20 C 1.38230 * 120.00389 * 359.74301 * 19 18 17 21 21 C 1.38232 * 120.00112 * 120.00202 * 16 14 13 22 22 C 1.53002 * 109.47233 * 60.00670 * 14 13 12 23 23 H 0.96999 * 120.00366 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47045 * 299.99841 * 11 9 7 25 25 H 1.09000 * 109.47140 * 59.99748 * 11 9 7 26 26 H 1.09000 * 109.46497 * 180.02562 * 12 11 9 27 27 H 1.09002 * 109.47067 * 299.99853 * 12 11 9 28 28 H 1.09001 * 109.46652 * 179.97438 * 13 12 11 29 29 H 1.08992 * 109.47514 * 59.99933 * 13 12 11 30 30 H 1.08003 * 120.00234 * 0.02562 * 17 16 14 31 31 H 1.07995 * 120.00072 * 180.23158 * 18 17 16 32 32 H 1.07999 * 119.99750 * 179.72242 * 19 18 17 33 33 H 1.08003 * 120.00407 * 179.97438 * 20 19 18 34 34 H 1.08005 * 120.00133 * 0.02562 * 21 16 14 35 35 H 1.09002 * 109.47075 * 59.99068 * 22 14 13 36 36 H 1.08996 * 109.47407 * 180.02562 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6241 -2.5567 -0.8904 11 6 0.3719 -2.5805 1.2490 12 6 -0.3935 -3.9053 1.2486 13 6 0.6004 -5.0685 1.2477 14 6 1.4795 -4.9871 -0.0019 15 1 0.8524 -5.0442 -0.8917 16 6 2.4581 -6.1332 -0.0031 17 6 3.3663 -6.2676 1.0303 18 6 4.2607 -7.3216 1.0317 19 6 4.2538 -8.2352 -0.0058 20 6 3.3491 -8.0978 -1.0418 21 6 2.4512 -7.0468 -1.0405 22 6 2.2450 -3.6624 -0.0016 23 1 -0.4850 0.8400 0.0004 24 1 0.9989 -2.5230 2.1388 25 1 -0.3364 -1.7520 1.2495 26 1 -1.0201 -3.9630 2.1386 27 1 -1.0205 -3.9624 0.3589 28 1 0.0551 -6.0123 1.2479 29 1 1.2274 -5.0114 2.1374 30 1 3.3743 -5.5516 1.8388 31 1 4.9678 -7.4288 1.8409 32 1 4.9556 -9.0562 -0.0070 33 1 3.3440 -8.8114 -1.8526 34 1 1.7449 -6.9390 -1.8504 35 1 2.8720 -3.6052 0.8882 36 1 2.8709 -3.6042 -0.8920 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261131402.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:08 Heat of formation + Delta-G solvation = -22.244239 kcal Electronic energy + Delta-G solvation = -15797.187235 eV Core-core repulsion = 13436.932225 eV Total energy + Delta-G solvation = -2360.255010 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.63875 -38.64114 -35.06281 -33.03765 -31.70771 -31.59529 -29.32508 -26.78073 -24.19079 -23.36727 -22.75483 -21.55297 -20.15802 -18.45812 -17.50236 -16.63230 -16.01396 -15.99304 -15.32281 -14.90098 -14.60982 -14.47544 -14.10681 -14.03450 -13.78783 -13.20466 -13.00897 -12.86535 -12.52509 -12.23208 -12.11590 -11.97257 -11.78057 -11.65693 -11.55695 -11.17527 -10.66392 -10.52423 -10.34042 -9.73521 -9.45819 -8.06908 -6.21226 0.55629 0.58337 1.38779 1.40651 1.51978 2.43346 2.97500 3.18857 3.80781 3.94088 4.19059 4.23978 4.25540 4.35784 4.50116 4.57647 4.69836 4.73894 4.82461 4.87925 4.89271 5.03745 5.09397 5.15439 5.23810 5.26923 5.40004 5.42686 5.48722 5.63976 5.66863 5.69198 5.74140 5.88682 6.05912 6.19379 6.24896 6.42827 6.91451 7.46673 8.96882 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.037207 B = 0.006308 C = 0.005822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.371117 B = 4438.049065 C = 4808.326349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 0.951 3.049 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.534 4.534 8 H 0.047 0.953 9 C 0.046 3.954 10 H -0.009 1.009 11 C -0.103 4.103 12 C -0.113 4.113 13 C -0.094 4.094 14 C -0.045 4.045 15 H 0.064 0.936 16 C -0.079 4.079 17 C -0.130 4.130 18 C -0.125 4.125 19 C -0.133 4.133 20 C -0.123 4.123 21 C -0.135 4.135 22 C -0.082 4.082 23 H 0.260 0.740 24 H 0.026 0.974 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.116 0.884 31 H 0.140 0.860 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.125 0.875 35 H 0.047 0.953 36 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.974 -15.127 1.300 15.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.186 4.186 3 Si 0.777 3.223 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.572 4.572 8 H 0.066 0.934 9 C 0.027 3.973 10 H 0.009 0.991 11 C -0.141 4.141 12 C -0.150 4.150 13 C -0.131 4.131 14 C -0.063 4.063 15 H 0.083 0.917 16 C -0.079 4.079 17 C -0.148 4.148 18 C -0.142 4.142 19 C -0.151 4.151 20 C -0.140 4.140 21 C -0.153 4.153 22 C -0.120 4.120 23 H 0.069 0.931 24 H 0.045 0.955 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.134 0.866 31 H 0.157 0.843 32 H 0.164 0.836 33 H 0.161 0.839 34 H 0.143 0.857 35 H 0.066 0.934 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.830 -15.005 1.299 15.817 hybrid contribution 0.161 1.430 -0.127 1.445 sum 4.992 -13.575 1.172 14.511 Atomic orbital electron populations 1.70029 1.07092 1.26922 1.51588 1.25718 0.95667 1.02250 0.94927 0.85614 0.79055 0.79984 0.77670 1.19374 1.20599 1.20473 1.21636 0.92877 0.92478 1.50231 0.93440 1.18628 0.93057 0.92080 0.93507 0.99053 1.21422 0.98737 0.96448 0.97522 1.21542 0.97655 0.95202 1.00637 1.21465 0.97004 0.97756 0.96883 1.20162 0.95000 0.92173 0.98969 0.91723 1.20029 0.96764 0.95852 0.95255 1.21160 0.96186 0.98784 0.98674 1.21413 0.98759 0.94531 0.99531 1.21450 0.99512 0.99931 0.94230 1.21421 0.95348 0.97911 0.99357 1.21295 1.00308 0.95418 0.98307 1.21465 0.97521 0.93538 0.99477 0.93104 0.95517 0.92547 0.92008 0.93542 0.91199 0.92112 0.86609 0.84264 0.83637 0.83878 0.85733 0.93445 0.94730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.98 11.32 21.44 0.24 -53.74 16 2 C 0.01 0.72 5.30 84.65 0.45 1.17 16 3 Si 0.95 44.56 29.54 68.60 2.03 46.59 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 7 C -0.53 -30.39 8.56 25.60 0.22 -30.17 16 8 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 9 C 0.05 2.35 2.10 -11.54 -0.02 2.33 16 10 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 11 C -0.10 -4.99 4.98 30.59 0.15 -4.83 16 12 C -0.11 -4.34 5.92 30.60 0.18 -4.16 16 13 C -0.09 -3.12 5.02 30.59 0.15 -2.97 16 14 C -0.04 -1.58 2.36 -11.54 -0.03 -1.60 16 15 H 0.06 2.33 7.88 -2.39 -0.02 2.31 16 16 C -0.08 -2.43 4.78 -19.87 -0.09 -2.53 16 17 C -0.13 -3.72 8.71 22.27 0.19 -3.53 16 18 C -0.12 -2.91 10.05 22.27 0.22 -2.69 16 19 C -0.13 -2.78 10.05 22.27 0.22 -2.56 16 20 C -0.12 -2.72 10.05 22.27 0.22 -2.49 16 21 C -0.14 -3.65 9.67 22.27 0.22 -3.44 16 22 C -0.08 -3.54 4.24 30.60 0.13 -3.41 16 23 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 24 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.06 3.10 6.07 -2.39 -0.01 3.08 16 26 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.06 1.98 7.40 -2.39 -0.02 1.96 16 30 H 0.12 3.36 7.11 -2.91 -0.02 3.34 16 31 H 0.14 2.54 8.06 -2.91 -0.02 2.51 16 32 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 33 H 0.14 2.34 8.06 -2.91 -0.02 2.31 16 34 H 0.12 3.10 7.95 -2.91 -0.02 3.07 16 35 H 0.05 2.02 7.38 -2.39 -0.02 2.00 16 36 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -62.10 286.83 5.52 -56.58 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 1.03 Total: 11.45 kcal Atomic # 6 Polarization: -63.10 SS G_CDS: 2.22 Total: -60.88 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: 0.24 Total: -53.74 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -62.10 5.52 -56.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261131402.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.337 kcal (2) G-P(sol) polarization free energy of solvation -62.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds