Wall clock time and date at job start Mon Mar 30 2020 03:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00111 * 2 1 4 4 H 1.48501 * 109.46950 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47074 * 299.99982 * 3 2 1 6 6 H 1.48500 * 109.46931 * 60.00310 * 3 2 1 7 7 C 1.37882 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00179 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99790 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47247 * 300.00044 * 9 7 2 11 11 C 1.53000 * 109.47083 * 59.99908 * 9 7 2 12 12 C 1.53001 * 109.46886 * 60.00443 * 11 9 7 13 13 C 1.52996 * 109.47302 * 59.99782 * 12 11 9 14 14 C 1.52997 * 109.46975 * 299.99941 * 13 12 11 15 15 H 1.09001 * 109.47375 * 300.00370 * 14 13 12 16 16 C 1.50706 * 109.47103 * 180.02562 * 14 13 12 17 17 C 1.38238 * 119.99541 * 299.72412 * 16 14 13 18 18 C 1.38239 * 119.99626 * 179.74216 * 17 16 14 19 19 C 1.38238 * 119.99895 * 0.53601 * 18 17 16 20 20 C 1.38234 * 120.00063 * 359.74153 * 19 18 17 21 21 C 1.38230 * 120.00341 * 120.00226 * 16 14 13 22 22 C 1.52996 * 109.47235 * 180.02562 * 9 7 2 23 23 H 0.97002 * 119.99797 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47194 * 179.97438 * 11 9 7 25 25 H 1.08992 * 109.47399 * 299.99938 * 11 9 7 26 26 H 1.09004 * 109.47086 * 179.97438 * 12 11 9 27 27 H 1.09001 * 109.46652 * 299.99655 * 12 11 9 28 28 H 1.09000 * 109.46870 * 180.02562 * 13 12 11 29 29 H 1.08992 * 109.47554 * 60.00308 * 13 12 11 30 30 H 1.07996 * 120.00031 * 0.02562 * 17 16 14 31 31 H 1.07991 * 119.99796 * 180.29958 * 18 17 16 32 32 H 1.08002 * 119.99678 * 179.76990 * 19 18 17 33 33 H 1.07999 * 120.00005 * 180.02562 * 20 19 18 34 34 H 1.08005 * 119.99901 * 359.97438 * 21 16 14 35 35 H 1.09001 * 109.47372 * 180.02562 * 22 9 7 36 36 H 1.09004 * 109.47108 * 59.99962 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8897 11 6 0.3709 -2.5799 -1.2494 12 6 1.2501 -2.4987 -2.4990 13 6 2.2442 -3.6616 -2.4996 14 6 3.1243 -3.5808 -1.2507 15 1 3.6693 -2.6369 -1.2506 16 6 4.1040 -4.7260 -1.2515 17 6 3.6435 -6.0294 -1.2462 18 6 4.5421 -7.0799 -1.2523 19 6 5.9011 -6.8269 -1.2527 20 6 6.3616 -5.5235 -1.2523 21 6 5.4629 -4.4731 -1.2519 22 6 2.2452 -3.6621 -0.0005 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1738 -3.5240 -1.2497 25 1 -0.3374 -1.7514 -1.2490 26 1 0.6231 -2.5566 -3.3888 27 1 1.7951 -1.5547 -2.4989 28 1 2.8708 -3.6035 -3.3896 29 1 1.6993 -4.6055 -2.4996 30 1 2.5818 -6.2270 -1.2417 31 1 4.1824 -8.0981 -1.2530 32 1 6.6032 -7.6476 -1.2538 33 1 7.4233 -5.3258 -1.2530 34 1 5.8227 -3.4547 -1.2520 35 1 1.7001 -4.6061 -0.0010 36 1 2.8719 -3.6044 0.8895 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261131403.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:10 Heat of formation + Delta-G solvation = -6.222880 kcal Electronic energy + Delta-G solvation = -16056.828370 eV Core-core repulsion = 13697.268098 eV Total energy + Delta-G solvation = -2359.560272 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.36226 -37.20195 -32.98833 -31.34307 -30.62229 -29.68370 -27.82137 -24.85104 -22.83386 -22.18462 -21.16470 -20.04912 -18.48903 -16.56069 -15.68181 -15.03044 -14.78076 -14.48511 -13.85902 -13.27765 -13.16142 -12.89032 -12.75331 -12.54546 -11.82509 -11.49684 -11.29148 -11.10205 -10.94229 -10.84996 -10.56390 -10.50375 -10.05330 -9.96116 -9.56723 -9.15685 -8.87915 -8.64978 -8.54589 -8.35871 -8.11087 -5.93242 -3.97449 1.66927 1.68151 3.30932 3.39685 3.42712 4.09094 4.47231 5.12533 5.15723 5.24247 5.37222 5.41485 5.68812 5.80483 5.83132 5.87009 6.05864 6.25312 6.37255 6.45408 6.54019 6.56158 6.63183 6.74091 6.74771 6.82184 6.87093 6.88063 6.96610 7.22882 7.26009 7.33441 7.53588 7.63106 7.79584 7.98551 8.21559 8.53010 9.05216 9.65633 11.12660 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.035427 B = 0.007323 C = 0.006615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.174031 B = 3822.496043 C = 4231.536507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.883 3.117 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.500 4.500 8 H 0.055 0.945 9 C 0.043 3.957 10 H 0.024 0.976 11 C -0.109 4.109 12 C -0.103 4.103 13 C -0.098 4.098 14 C -0.044 4.044 15 H 0.086 0.914 16 C -0.058 4.058 17 C -0.117 4.117 18 C -0.123 4.123 19 C -0.139 4.139 20 C -0.122 4.122 21 C -0.122 4.122 22 C -0.093 4.093 23 H 0.257 0.743 24 H 0.012 0.988 25 H 0.089 0.911 26 H 0.032 0.968 27 H 0.070 0.930 28 H 0.043 0.957 29 H 0.047 0.953 30 H 0.120 0.880 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.035 0.965 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.442 -9.962 -3.699 12.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.711 3.289 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.538 4.538 8 H 0.073 0.927 9 C 0.025 3.975 10 H 0.043 0.957 11 C -0.146 4.146 12 C -0.141 4.141 13 C -0.136 4.136 14 C -0.063 4.063 15 H 0.104 0.896 16 C -0.058 4.058 17 C -0.135 4.135 18 C -0.141 4.141 19 C -0.157 4.157 20 C -0.140 4.140 21 C -0.140 4.140 22 C -0.131 4.131 23 H 0.067 0.933 24 H 0.031 0.969 25 H 0.107 0.893 26 H 0.051 0.949 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.138 0.862 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.138 0.862 35 H 0.053 0.947 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.293 -9.834 -3.696 12.788 hybrid contribution 0.514 0.918 0.007 1.052 sum 7.807 -8.916 -3.688 12.412 Atomic orbital electron populations 1.69885 1.05817 1.26007 1.51326 1.24939 0.94749 0.98776 0.95520 0.86683 0.80246 0.84465 0.77511 1.19872 1.21154 1.21195 1.21190 0.92724 0.90460 1.49437 0.92674 1.18699 0.92638 0.91970 0.94185 0.95742 1.21514 0.98747 0.99229 0.95151 1.21381 0.97071 0.98226 0.97394 1.21492 0.97232 0.98940 0.95939 1.20239 0.94458 0.95097 0.96468 0.89602 1.20365 0.94402 0.95333 0.95723 1.21065 0.99657 0.92299 1.00464 1.21088 0.93442 0.98687 1.00892 1.21006 0.95541 0.96522 1.02652 1.21078 0.99182 0.92932 1.00839 1.21160 0.92948 0.99056 1.00832 1.21593 0.97568 0.98764 0.95132 0.93254 0.96884 0.89263 0.94927 0.91175 0.93823 0.93394 0.86228 0.86705 0.86854 0.86689 0.86227 0.94661 0.93652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.15 11.32 55.43 0.63 -24.52 16 2 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 3 Si 0.88 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.50 -13.20 6.61 -34.44 -0.23 -13.43 16 8 H 0.06 1.45 6.71 -52.49 -0.35 1.10 16 9 C 0.04 1.06 2.58 -91.77 -0.24 0.83 16 10 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 11 C -0.11 -2.53 5.24 -26.73 -0.14 -2.67 16 12 C -0.10 -2.16 5.70 -26.73 -0.15 -2.31 16 13 C -0.10 -1.81 5.02 -26.73 -0.13 -1.95 16 14 C -0.04 -0.84 2.14 -91.75 -0.20 -1.03 16 15 H 0.09 1.77 6.35 -51.93 -0.33 1.44 16 16 C -0.06 -0.97 4.78 -104.62 -0.50 -1.47 16 17 C -0.12 -1.79 8.71 -39.58 -0.34 -2.13 16 18 C -0.12 -1.64 10.05 -39.58 -0.40 -2.04 16 19 C -0.14 -1.78 10.05 -39.58 -0.40 -2.17 16 20 C -0.12 -1.64 10.05 -39.58 -0.40 -2.04 16 21 C -0.12 -1.89 9.67 -39.59 -0.38 -2.27 16 22 C -0.09 -1.93 4.51 -26.71 -0.12 -2.05 16 23 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 24 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 1.61 7.22 -51.93 -0.37 1.23 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.83 7.40 -51.93 -0.38 0.45 16 30 H 0.12 1.77 7.11 -52.49 -0.37 1.39 16 31 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.12 1.76 7.95 -52.48 -0.42 1.34 16 35 H 0.03 0.68 7.38 -51.93 -0.38 0.30 16 36 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 281.96 15.07 4.25 4.25 Total: -1.00 -27.55 281.96 -9.31 -36.87 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -5.45 Total: 0.57 kcal Atomic # 6 Polarization: -29.49 SS G_CDS: -3.72 Total: -33.21 kcal Atomic # 7 Polarization: -25.15 SS G_CDS: 0.63 Total: -24.52 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -27.55 -9.31 -36.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261131403.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.643 kcal (2) G-P(sol) polarization free energy of solvation -27.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds