Wall clock time and date at job start Mon Mar 30 2020 03:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00111 * 2 1 4 4 H 1.48501 * 109.46950 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47074 * 299.99982 * 3 2 1 6 6 H 1.48500 * 109.46931 * 60.00310 * 3 2 1 7 7 C 1.37882 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00179 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99790 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47247 * 300.00044 * 9 7 2 11 11 C 1.53000 * 109.47083 * 59.99908 * 9 7 2 12 12 C 1.53001 * 109.46886 * 60.00443 * 11 9 7 13 13 C 1.52996 * 109.47302 * 59.99782 * 12 11 9 14 14 C 1.52997 * 109.46975 * 299.99941 * 13 12 11 15 15 H 1.09001 * 109.47375 * 300.00370 * 14 13 12 16 16 C 1.50706 * 109.47103 * 180.02562 * 14 13 12 17 17 C 1.38238 * 119.99541 * 299.72412 * 16 14 13 18 18 C 1.38239 * 119.99626 * 179.74216 * 17 16 14 19 19 C 1.38238 * 119.99895 * 0.53601 * 18 17 16 20 20 C 1.38234 * 120.00063 * 359.74153 * 19 18 17 21 21 C 1.38230 * 120.00341 * 120.00226 * 16 14 13 22 22 C 1.52996 * 109.47235 * 180.02562 * 9 7 2 23 23 H 0.97002 * 119.99797 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47194 * 179.97438 * 11 9 7 25 25 H 1.08992 * 109.47399 * 299.99938 * 11 9 7 26 26 H 1.09004 * 109.47086 * 179.97438 * 12 11 9 27 27 H 1.09001 * 109.46652 * 299.99655 * 12 11 9 28 28 H 1.09000 * 109.46870 * 180.02562 * 13 12 11 29 29 H 1.08992 * 109.47554 * 60.00308 * 13 12 11 30 30 H 1.07996 * 120.00031 * 0.02562 * 17 16 14 31 31 H 1.07991 * 119.99796 * 180.29958 * 18 17 16 32 32 H 1.08002 * 119.99678 * 179.76990 * 19 18 17 33 33 H 1.07999 * 120.00005 * 180.02562 * 20 19 18 34 34 H 1.08005 * 119.99901 * 359.97438 * 21 16 14 35 35 H 1.09001 * 109.47372 * 180.02562 * 22 9 7 36 36 H 1.09004 * 109.47108 * 59.99962 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8897 11 6 0.3709 -2.5799 -1.2494 12 6 1.2501 -2.4987 -2.4990 13 6 2.2442 -3.6616 -2.4996 14 6 3.1243 -3.5808 -1.2507 15 1 3.6693 -2.6369 -1.2506 16 6 4.1040 -4.7260 -1.2515 17 6 3.6435 -6.0294 -1.2462 18 6 4.5421 -7.0799 -1.2523 19 6 5.9011 -6.8269 -1.2527 20 6 6.3616 -5.5235 -1.2523 21 6 5.4629 -4.4731 -1.2519 22 6 2.2452 -3.6621 -0.0005 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1738 -3.5240 -1.2497 25 1 -0.3374 -1.7514 -1.2490 26 1 0.6231 -2.5566 -3.3888 27 1 1.7951 -1.5547 -2.4989 28 1 2.8708 -3.6035 -3.3896 29 1 1.6993 -4.6055 -2.4996 30 1 2.5818 -6.2270 -1.2417 31 1 4.1824 -8.0981 -1.2530 32 1 6.6032 -7.6476 -1.2538 33 1 7.4233 -5.3258 -1.2530 34 1 5.8227 -3.4547 -1.2520 35 1 1.7001 -4.6061 -0.0010 36 1 2.8719 -3.6044 0.8895 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261131403.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:10 Heat of formation + Delta-G solvation = -18.255964 kcal Electronic energy + Delta-G solvation = -16057.350163 eV Core-core repulsion = 13697.268098 eV Total energy + Delta-G solvation = -2360.082066 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.65415 -38.72177 -34.81142 -32.92012 -31.69064 -31.48542 -29.25054 -26.89836 -24.15568 -23.34313 -22.88610 -21.47938 -20.27299 -17.76588 -17.60873 -16.61632 -16.23844 -15.94665 -15.27381 -14.78975 -14.67655 -14.52695 -14.06030 -13.88613 -13.50268 -13.07773 -12.94305 -12.85905 -12.69344 -12.38957 -12.11118 -12.00213 -11.80740 -11.50322 -11.39915 -10.93826 -10.71062 -10.44836 -10.24529 -9.72183 -9.42529 -8.02665 -6.12682 0.57991 0.59643 1.38845 1.41990 1.51605 2.45696 2.99428 3.25319 3.88451 4.00740 4.23996 4.26856 4.28580 4.37453 4.56018 4.67409 4.74766 4.78217 4.87863 4.95946 4.99604 5.04906 5.13587 5.16066 5.25779 5.29796 5.41036 5.48823 5.67996 5.69281 5.69891 5.73338 5.80612 5.94299 6.00727 6.23190 6.25968 6.47244 6.97200 7.53018 9.02402 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.035427 B = 0.007323 C = 0.006615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.174031 B = 3822.496043 C = 4231.536507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.013 3.987 3 Si 0.941 3.059 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.285 1.285 7 C -0.505 4.505 8 H 0.051 0.949 9 C 0.038 3.962 10 H -0.012 1.012 11 C -0.104 4.104 12 C -0.098 4.098 13 C -0.091 4.091 14 C -0.035 4.035 15 H 0.061 0.939 16 C -0.080 4.080 17 C -0.128 4.128 18 C -0.123 4.123 19 C -0.134 4.134 20 C -0.123 4.123 21 C -0.139 4.139 22 C -0.083 4.083 23 H 0.257 0.743 24 H 0.027 0.973 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.044 0.956 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.121 0.879 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.140 0.860 34 H 0.116 0.884 35 H 0.049 0.951 36 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.273 -11.766 -4.548 15.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.185 4.185 3 Si 0.767 3.233 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.211 1.211 7 C -0.543 4.543 8 H 0.069 0.931 9 C 0.019 3.981 10 H 0.006 0.994 11 C -0.142 4.142 12 C -0.136 4.136 13 C -0.128 4.128 14 C -0.053 4.053 15 H 0.080 0.920 16 C -0.080 4.080 17 C -0.146 4.146 18 C -0.140 4.140 19 C -0.152 4.152 20 C -0.141 4.141 21 C -0.157 4.157 22 C -0.121 4.121 23 H 0.066 0.934 24 H 0.045 0.955 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.139 0.861 31 H 0.160 0.840 32 H 0.164 0.836 33 H 0.158 0.842 34 H 0.134 0.866 35 H 0.068 0.932 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 9.135 -11.642 -4.545 15.480 hybrid contribution -0.038 1.413 0.304 1.446 sum 9.096 -10.229 -4.241 14.331 Atomic orbital electron populations 1.70025 1.07051 1.26579 1.52316 1.25627 0.95477 1.01839 0.95514 0.85763 0.79325 0.80775 0.77396 1.19211 1.20809 1.21084 1.21421 0.92633 0.91528 1.48729 0.93057 1.18698 0.93123 0.93008 0.93224 0.99426 1.21379 0.98413 0.98523 0.95882 1.21290 0.97282 0.98250 0.96745 1.21425 0.96759 0.98230 0.96411 1.20005 0.94495 0.95317 0.95510 0.92049 1.20150 0.94375 0.95033 0.98410 1.21167 1.00293 0.92198 1.00981 1.21430 0.93549 0.99464 0.99601 1.21440 0.95973 0.97145 1.00636 1.21391 1.00188 0.92751 0.99746 1.21277 0.92962 0.99828 1.01668 1.21437 0.96950 0.97648 0.96063 0.93377 0.95463 0.92574 0.93174 0.93766 0.92176 0.91848 0.86074 0.83955 0.83608 0.84190 0.86572 0.93199 0.94672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.53 11.32 21.45 0.24 -53.29 16 2 C 0.01 0.73 5.30 84.66 0.45 1.18 16 3 Si 0.94 44.01 29.54 68.60 2.03 46.03 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 6 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 7 C -0.50 -27.45 6.61 25.60 0.17 -27.28 16 8 H 0.05 2.77 6.71 -2.92 -0.02 2.75 16 9 C 0.04 1.91 2.58 -11.54 -0.03 1.88 16 10 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 11 C -0.10 -4.95 5.24 30.59 0.16 -4.79 16 12 C -0.10 -4.10 5.70 30.59 0.17 -3.92 16 13 C -0.09 -3.23 5.02 30.59 0.15 -3.07 16 14 C -0.03 -1.31 2.14 -11.52 -0.02 -1.33 16 15 H 0.06 2.58 6.35 -2.39 -0.02 2.56 16 16 C -0.08 -2.56 4.78 -19.86 -0.09 -2.66 16 17 C -0.13 -3.63 8.71 22.27 0.19 -3.44 16 18 C -0.12 -2.82 10.05 22.27 0.22 -2.60 16 19 C -0.13 -2.87 10.05 22.27 0.22 -2.64 16 20 C -0.12 -2.92 10.05 22.27 0.22 -2.70 16 21 C -0.14 -4.11 9.67 22.27 0.22 -3.89 16 22 C -0.08 -3.50 4.51 30.61 0.14 -3.36 16 23 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 24 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.06 3.05 6.07 -2.39 -0.01 3.04 16 26 H 0.05 1.88 8.14 -2.38 -0.02 1.87 16 27 H 0.04 2.05 7.22 -2.39 -0.02 2.04 16 28 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.06 2.07 7.40 -2.39 -0.02 2.05 16 30 H 0.12 3.30 7.11 -2.91 -0.02 3.28 16 31 H 0.14 2.46 8.06 -2.92 -0.02 2.43 16 32 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 33 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 34 H 0.12 3.38 7.95 -2.91 -0.02 3.35 16 35 H 0.05 1.91 7.38 -2.39 -0.02 1.90 16 36 H 0.03 1.50 8.14 -2.38 -0.02 1.49 16 Total: -1.00 -60.23 281.96 5.48 -54.74 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 1.04 Total: 11.14 kcal Atomic # 6 Polarization: -60.80 SS G_CDS: 2.18 Total: -58.63 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: 0.24 Total: -53.29 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -60.23 5.48 -54.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261131403.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.487 kcal (2) G-P(sol) polarization free energy of solvation -60.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds