Wall clock time and date at job start Mon Mar 30 2020 03:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38261 * 119.99864 * 2 1 4 4 C 1.38217 * 119.99905 * 179.78607 * 3 2 1 5 5 C 1.38253 * 119.99832 * 0.45670 * 4 3 2 6 6 C 1.38212 * 120.00378 * 359.77282 * 5 4 3 7 7 C 1.50694 * 120.00275 * 179.97438 * 6 5 4 8 8 C 1.52999 * 115.55274 * 94.59959 * 7 6 5 9 9 H 1.08996 * 109.47881 * 179.57808 * 8 7 6 10 10 C 1.53007 * 109.47154 * 59.57485 * 8 7 6 11 11 C 1.50706 * 109.46874 * 299.58020 * 8 7 6 12 12 H 1.07996 * 120.00274 * 35.30737 * 11 8 7 13 13 C 1.37878 * 119.99877 * 215.31201 * 11 8 7 14 14 N 1.31508 * 120.00387 * 180.02562 * 13 11 8 15 15 Si 1.86809 * 119.99912 * 0.06216 * 13 11 8 16 16 H 1.48500 * 109.46752 * 89.02575 * 15 13 11 17 17 H 1.48504 * 109.46859 * 209.02633 * 15 13 11 18 18 H 1.48497 * 109.47112 * 329.02772 * 15 13 11 19 19 C 1.53003 * 117.49895 * 308.89148 * 7 6 5 20 20 C 1.53004 * 117.49970 * 240.26816 * 7 6 5 21 21 C 1.38215 * 120.00374 * 180.26422 * 2 1 3 22 22 H 1.08997 * 109.47250 * 269.72450 * 1 2 3 23 23 H 1.08996 * 109.47003 * 29.73553 * 1 2 3 24 24 H 1.09000 * 109.46589 * 149.73340 * 1 2 3 25 25 H 1.07999 * 120.00103 * 359.97438 * 3 2 1 26 26 H 1.07999 * 119.99921 * 180.25616 * 4 3 2 27 27 H 1.07998 * 119.99860 * 179.78806 * 5 4 3 28 28 H 1.08995 * 109.47154 * 174.28142 * 10 8 7 29 29 H 1.09000 * 109.46982 * 294.28098 * 10 8 7 30 30 H 1.09001 * 109.46561 * 54.28279 * 10 8 7 31 31 H 0.97002 * 120.00803 * 180.02562 * 14 13 11 32 32 H 1.08996 * 117.49944 * 359.97438 * 19 7 6 33 33 H 1.09000 * 117.49696 * 145.02291 * 19 7 6 34 34 H 1.09003 * 117.49765 * 214.97719 * 20 7 6 35 35 H 1.09002 * 117.49736 * 0.02562 * 20 7 6 36 36 H 1.08005 * 119.99566 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1974 0.0045 5 6 4.2717 0.0001 -0.0006 6 6 3.5807 -1.1969 -0.0054 7 6 4.3342 -2.5019 -0.0115 8 6 4.5692 -3.1347 1.3615 9 1 5.1125 -4.0720 1.2416 10 6 3.2224 -3.4085 2.0341 11 6 5.3758 -2.1925 2.2175 12 1 5.2286 -1.1260 2.1330 13 6 6.3018 -2.6921 3.1085 14 7 7.0054 -1.8700 3.8559 15 14 6.5578 -4.5369 3.2534 16 1 7.5952 -4.9703 2.2832 17 1 6.9997 -4.8685 4.6318 18 1 5.2821 -5.2382 2.9602 19 6 5.4248 -2.6831 -1.0693 20 6 4.1039 -3.4452 -1.1940 21 6 2.1982 -1.1969 -0.0055 22 1 -0.3633 -0.0049 1.0276 23 1 -0.3633 0.8923 -0.5097 24 1 -0.3632 -0.8876 -0.5180 25 1 1.6583 2.1327 -0.0004 26 1 4.1204 2.1327 0.0087 27 1 5.3517 0.0001 -0.0006 28 1 3.3850 -3.9505 2.9656 29 1 2.7234 -2.4629 2.2463 30 1 2.5994 -4.0070 1.3694 31 1 7.6572 -2.2214 4.4825 32 1 5.5969 -1.8585 -1.7610 33 1 6.3099 -3.2531 -0.7870 34 1 4.1202 -4.5165 -0.9938 35 1 3.4077 -3.1215 -1.9677 36 1 1.6582 -2.1323 -0.0094 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261134617.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:10 Heat of formation + Delta-G solvation = 16.256310 kcal Electronic energy + Delta-G solvation = -16111.574608 eV Core-core repulsion = 13752.989107 eV Total energy + Delta-G solvation = -2358.585501 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.76970 -38.37400 -34.97892 -33.38390 -32.66617 -31.37843 -27.77289 -27.03395 -24.68497 -23.35003 -22.84202 -22.04182 -19.52165 -18.99158 -17.24293 -16.66544 -15.95930 -15.80095 -15.65180 -15.03689 -14.53681 -14.39100 -14.07228 -13.82512 -13.54713 -13.19887 -12.95663 -12.80836 -12.71595 -12.49621 -12.28657 -12.23917 -11.89959 -11.77760 -11.42324 -11.12093 -10.89796 -10.64014 -10.32459 -9.51778 -9.27865 -8.20585 -6.20720 0.61754 0.63480 1.33147 1.35758 1.45819 2.38348 2.98088 3.01349 3.21044 3.81358 4.03327 4.12966 4.15141 4.31180 4.39204 4.47464 4.62986 4.69989 4.77786 4.82624 4.87147 4.91559 4.94580 5.05352 5.06518 5.14865 5.22388 5.35236 5.37165 5.41125 5.46930 5.67166 5.75064 5.76876 5.85461 5.97915 6.29477 6.46156 6.86946 7.42448 8.96440 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.028076 B = 0.008766 C = 0.008301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.036521 B = 3193.535214 C = 3372.155340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.098 4.098 3 C -0.137 4.137 4 C -0.129 4.129 5 C -0.131 4.131 6 C -0.024 4.024 7 C -0.079 4.079 8 C 0.047 3.953 9 H 0.030 0.970 10 C -0.129 4.129 11 C -0.489 4.489 12 H 0.040 0.960 13 C 0.006 3.994 14 N -0.956 5.956 15 Si 0.931 3.069 16 H -0.271 1.271 17 H -0.293 1.293 18 H -0.242 1.242 19 C -0.175 4.175 20 C -0.157 4.157 21 C -0.124 4.124 22 H 0.072 0.928 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.143 0.857 26 H 0.130 0.870 27 H 0.097 0.903 28 H 0.030 0.970 29 H 0.039 0.961 30 H 0.055 0.945 31 H 0.261 0.739 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.561 0.194 -10.474 15.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.098 4.098 3 C -0.154 4.154 4 C -0.147 4.147 5 C -0.149 4.149 6 C -0.024 4.024 7 C -0.079 4.079 8 C 0.028 3.972 9 H 0.049 0.951 10 C -0.187 4.187 11 C -0.527 4.527 12 H 0.059 0.941 13 C -0.189 4.189 14 N -0.597 5.597 15 Si 0.756 3.244 16 H -0.197 1.197 17 H -0.220 1.220 18 H -0.166 1.166 19 C -0.212 4.212 20 C -0.194 4.194 21 C -0.142 4.142 22 H 0.090 0.910 23 H 0.099 0.901 24 H 0.093 0.907 25 H 0.161 0.839 26 H 0.148 0.852 27 H 0.115 0.885 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.441 0.194 -10.347 15.427 hybrid contribution 1.123 -0.461 0.738 1.421 sum -10.318 -0.267 -9.608 14.101 Atomic orbital electron populations 1.20783 0.88975 1.03708 1.02784 1.20242 0.97609 0.92628 0.99278 1.21220 0.93656 0.98449 1.02124 1.21298 0.95264 0.97621 1.00525 1.21037 0.99386 0.93163 1.01319 1.19053 0.93467 0.92810 0.97082 1.20205 1.01256 0.94593 0.91839 1.18669 0.93929 0.94179 0.90440 0.95148 1.21859 0.97908 0.99779 0.99130 1.21271 1.18601 0.93961 1.18883 0.94130 1.25864 0.95706 1.01863 0.95494 1.70057 1.26507 1.36642 1.26527 0.85975 0.79702 0.81661 0.77034 1.19686 1.21950 1.16588 1.22895 0.93129 1.03174 1.02039 1.23121 0.98915 0.97798 0.99516 1.21007 0.92953 0.98363 1.01859 0.90955 0.90082 0.90729 0.83944 0.85219 0.88506 0.95079 0.94200 0.92570 0.93052 0.89000 0.90077 0.88164 0.87696 0.85442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.14 10.01 71.24 0.71 -1.42 16 2 C -0.10 -2.80 5.88 -19.86 -0.12 -2.92 16 3 C -0.14 -3.95 9.70 22.27 0.22 -3.74 16 4 C -0.13 -4.33 10.05 22.27 0.22 -4.10 16 5 C -0.13 -5.19 8.32 22.27 0.19 -5.01 16 6 C -0.02 -0.92 4.12 -19.87 -0.08 -1.01 16 7 C -0.08 -3.09 1.14 -52.93 -0.06 -3.15 16 8 C 0.05 2.13 1.71 -11.54 -0.02 2.11 16 9 H 0.03 1.39 5.38 -2.39 -0.01 1.38 16 10 C -0.13 -5.34 8.44 71.98 0.61 -4.74 16 11 C -0.49 -27.58 8.61 25.60 0.22 -27.36 16 12 H 0.04 2.56 6.66 -2.91 -0.02 2.54 16 13 C 0.01 0.35 5.47 84.66 0.46 0.82 16 14 N -0.96 -60.64 13.96 21.45 0.30 -60.34 16 15 Si 0.93 44.66 26.73 68.60 1.83 46.49 16 16 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 17 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 18 H -0.24 -10.67 6.43 99.48 0.64 -10.03 16 19 C -0.18 -6.33 9.70 30.60 0.30 -6.03 16 20 C -0.16 -4.88 9.85 30.60 0.30 -4.58 16 21 C -0.12 -4.08 7.98 22.27 0.18 -3.90 16 22 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.08 1.31 8.08 -2.39 -0.02 1.29 16 24 H 0.07 1.33 8.09 -2.39 -0.02 1.31 16 25 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 26 H 0.13 3.77 8.06 -2.91 -0.02 3.75 16 27 H 0.10 4.20 8.06 -2.91 -0.02 4.18 16 28 H 0.03 1.30 7.50 -2.39 -0.02 1.29 16 29 H 0.04 1.69 7.05 -2.39 -0.02 1.67 16 30 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 32 H 0.09 3.11 8.13 -2.39 -0.02 3.09 16 33 H 0.08 3.06 8.14 -2.39 -0.02 3.05 16 34 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 35 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 36 H 0.13 3.79 8.00 -2.91 -0.02 3.77 16 Total: -1.00 -66.13 294.39 6.23 -59.90 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.97 Total: 18.98 kcal Atomic # 6 Polarization: -68.15 SS G_CDS: 3.13 Total: -65.02 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: 0.30 Total: -60.34 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.83 Total: 46.49 kcal Total: -66.13 6.23 -59.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261134617.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.156 kcal (2) G-P(sol) polarization free energy of solvation -66.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds