Wall clock time and date at job start Mon Mar 30 2020 03:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38256 * 120.00028 * 2 1 4 4 C 1.38222 * 119.99787 * 180.02562 * 3 2 1 5 5 C 1.38249 * 120.00297 * 0.02736 * 4 3 2 6 6 C 1.38217 * 120.00116 * 359.97438 * 5 4 3 7 7 C 1.50692 * 120.00343 * 179.97438 * 6 5 4 8 8 C 1.53001 * 115.55161 * 294.92839 * 7 6 5 9 9 H 1.08998 * 109.47081 * 54.63350 * 8 7 6 10 10 C 1.53001 * 109.47193 * 174.63473 * 8 7 6 11 11 C 1.50701 * 109.46929 * 294.63601 * 8 7 6 12 12 H 1.08000 * 120.00069 * 354.50775 * 11 8 7 13 13 C 1.37878 * 120.00198 * 174.51390 * 11 8 7 14 14 N 1.31515 * 119.99667 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 120.00216 * 179.97438 * 13 11 8 16 16 H 1.48499 * 109.46839 * 59.99694 * 15 13 11 17 17 H 1.48494 * 109.46993 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47176 * 299.99848 * 15 13 11 19 19 C 1.53002 * 117.50035 * 149.25744 * 7 6 5 20 20 C 1.52995 * 117.49798 * 80.59493 * 7 6 5 21 21 C 1.38214 * 119.99896 * 180.02562 * 2 1 3 22 22 H 1.08999 * 109.46902 * 269.93366 * 1 2 3 23 23 H 1.09001 * 109.46840 * 29.93098 * 1 2 3 24 24 H 1.08999 * 109.46769 * 149.92454 * 1 2 3 25 25 H 1.07998 * 120.00333 * 0.06759 * 3 2 1 26 26 H 1.08004 * 119.99550 * 180.30529 * 4 3 2 27 27 H 1.07997 * 120.00276 * 179.97438 * 5 4 3 28 28 H 1.09001 * 109.47132 * 299.99514 * 10 8 7 29 29 H 1.08998 * 109.47208 * 59.99954 * 10 8 7 30 30 H 1.09000 * 109.47094 * 179.97438 * 10 8 7 31 31 H 0.96998 * 119.99837 * 179.97438 * 14 13 11 32 32 H 1.08999 * 117.49458 * 359.97438 * 19 7 6 33 33 H 1.08997 * 117.49991 * 145.02515 * 19 7 6 34 34 H 1.09007 * 117.50114 * 214.97732 * 20 7 6 35 35 H 1.09007 * 117.50065 * 359.97438 * 20 7 6 36 36 H 1.08001 * 120.00088 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0016 6 6 3.5807 -1.1970 -0.0017 7 6 4.3341 -2.5021 -0.0035 8 6 5.1665 -2.7818 -1.2564 9 1 5.8478 -1.9496 -1.4333 10 6 5.9723 -4.0670 -1.0569 11 6 4.2506 -2.9421 -2.4424 12 1 3.1798 -2.9418 -2.3017 13 6 4.7797 -3.0891 -3.7071 14 7 6.0836 -3.0890 -3.8785 15 14 3.6445 -3.2885 -5.1771 16 1 2.7683 -2.0950 -5.2913 17 1 4.4553 -3.4268 -6.4135 18 1 2.8074 -4.5015 -4.9952 19 6 3.6780 -3.6976 0.6902 20 6 4.8809 -3.0039 1.3344 21 6 2.1980 -1.1970 -0.0005 22 1 -0.3633 -0.0012 1.0277 23 1 -0.3633 0.8906 -0.5128 24 1 -0.3633 -0.8893 -0.5150 25 1 1.6583 2.1327 0.0011 26 1 4.1205 2.1326 0.0044 27 1 5.3517 0.0000 -0.0025 28 1 6.6348 -3.9511 -0.1991 29 1 5.2910 -4.8993 -0.8800 30 1 6.5649 -4.2666 -1.9497 31 1 6.4559 -3.1928 -4.7682 32 1 2.7015 -3.5399 1.1482 33 1 3.8396 -4.6834 0.2542 34 1 5.8335 -3.5338 1.3220 35 1 4.6961 -2.3898 2.2159 36 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261134618.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:12 Heat of formation + Delta-G solvation = 33.137359 kcal Electronic energy + Delta-G solvation = -16028.404743 eV Core-core repulsion = 13670.551260 eV Total energy + Delta-G solvation = -2357.853484 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.33903 -37.08182 -33.01039 -32.22268 -30.19696 -29.45541 -26.53850 -25.18135 -23.51181 -22.01595 -21.03521 -20.63780 -17.80551 -16.20091 -15.94560 -15.15018 -14.63240 -14.35367 -14.04548 -13.45994 -13.24414 -12.75183 -12.57554 -12.04515 -11.97398 -11.64446 -11.31104 -11.02706 -10.94199 -10.75983 -10.61350 -10.40643 -10.24230 -10.17475 -9.69220 -9.41606 -9.21510 -8.51950 -8.25126 -8.18375 -7.85978 -5.93292 -3.96029 1.92856 1.97753 3.36016 3.40034 3.43465 4.28945 4.46903 4.68221 5.22846 5.26329 5.37224 5.39636 5.61700 5.67080 5.75962 5.79532 5.80850 5.94486 6.07781 6.12125 6.24120 6.27420 6.50033 6.61737 6.66072 6.75723 6.81167 6.97982 7.01264 7.07553 7.20007 7.32212 7.41523 7.60332 7.76942 7.99728 8.11970 8.51412 9.06590 9.67430 11.14647 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.020323 B = 0.010032 C = 0.008178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.450733 B = 2790.300344 C = 3423.176199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.095 4.095 3 C -0.139 4.139 4 C -0.120 4.120 5 C -0.113 4.113 6 C -0.002 4.002 7 C -0.063 4.063 8 C 0.084 3.916 9 H 0.034 0.966 10 C -0.137 4.137 11 C -0.497 4.497 12 H 0.054 0.946 13 C 0.060 3.940 14 N -0.894 5.894 15 Si 0.886 3.114 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.278 1.278 19 C -0.173 4.173 20 C -0.188 4.188 21 C -0.113 4.113 22 H 0.063 0.937 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.111 0.889 26 H 0.114 0.886 27 H 0.118 0.882 28 H 0.013 0.987 29 H 0.030 0.970 30 H 0.073 0.927 31 H 0.259 0.741 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.038 4.551 8.571 11.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.095 4.095 3 C -0.157 4.157 4 C -0.138 4.138 5 C -0.131 4.131 6 C -0.002 4.002 7 C -0.063 4.063 8 C 0.066 3.934 9 H 0.052 0.948 10 C -0.195 4.195 11 C -0.535 4.535 12 H 0.072 0.928 13 C -0.140 4.140 14 N -0.534 5.534 15 Si 0.715 3.285 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.204 1.204 19 C -0.210 4.210 20 C -0.225 4.225 21 C -0.131 4.131 22 H 0.082 0.918 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.129 0.871 26 H 0.132 0.868 27 H 0.136 0.864 28 H 0.032 0.968 29 H 0.049 0.951 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.906 4.535 8.420 11.240 hybrid contribution -0.571 -0.109 -1.002 1.159 sum -6.477 4.426 7.418 10.796 Atomic orbital electron populations 1.20727 0.91949 1.02366 1.01547 1.19786 0.95479 0.93337 1.00888 1.20812 0.94241 0.96884 1.03785 1.20993 0.94169 0.97621 1.01027 1.20925 0.99929 0.91793 1.00418 1.19114 0.92666 0.93604 0.94840 1.20611 1.00619 0.90373 0.94654 1.18198 0.92721 0.94322 0.88192 0.94794 1.21921 0.98978 0.98940 0.99656 1.21021 0.92792 1.48769 0.90942 0.92781 1.24926 0.94877 0.95567 0.98674 1.69907 1.10253 1.50918 1.22288 0.86742 0.80881 0.78634 0.82279 1.20357 1.21438 1.20382 1.22944 0.95725 0.98261 1.04084 1.23140 0.98563 1.04570 0.96193 1.20875 0.93871 0.97079 1.01260 0.91844 0.92061 0.91780 0.87084 0.86792 0.86390 0.96818 0.95138 0.90811 0.93130 0.90288 0.88514 0.88581 0.90385 0.86516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 10.01 36.01 0.36 -1.04 16 2 C -0.09 -1.55 5.88 -104.62 -0.62 -2.17 16 3 C -0.14 -2.19 9.70 -39.58 -0.38 -2.58 16 4 C -0.12 -1.98 10.05 -39.58 -0.40 -2.38 16 5 C -0.11 -2.13 9.63 -39.59 -0.38 -2.51 16 6 C 0.00 -0.04 4.81 -104.62 -0.50 -0.55 16 7 C -0.06 -1.30 1.64 -155.66 -0.26 -1.55 16 8 C 0.08 2.08 2.22 -91.77 -0.20 1.87 16 9 H 0.03 0.93 8.12 -51.93 -0.42 0.51 16 10 C -0.14 -3.25 8.06 37.16 0.30 -2.95 16 11 C -0.50 -13.59 8.19 -34.44 -0.28 -13.88 16 12 H 0.05 1.49 7.75 -52.49 -0.41 1.09 16 13 C 0.06 1.68 5.32 -17.82 -0.09 1.59 16 14 N -0.89 -25.85 11.74 55.43 0.65 -25.20 16 15 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 19 C -0.17 -3.22 9.06 -26.69 -0.24 -3.46 16 20 C -0.19 -3.36 9.51 -26.69 -0.25 -3.62 16 21 C -0.11 -2.09 8.88 -39.58 -0.35 -2.44 16 22 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 23 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 24 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 25 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 26 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 27 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 28 H 0.01 0.28 6.31 -51.93 -0.33 -0.05 16 29 H 0.03 0.68 6.39 -51.93 -0.33 0.35 16 30 H 0.07 1.94 6.52 -51.93 -0.34 1.60 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.08 1.33 7.11 -51.93 -0.37 0.96 16 33 H 0.10 1.85 6.45 -51.93 -0.33 1.52 16 34 H 0.10 1.70 6.07 -51.92 -0.32 1.38 16 35 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 36 H 0.12 2.08 7.00 -52.49 -0.37 1.71 16 LS Contribution 292.21 15.07 4.40 4.40 Total: -1.00 -28.87 292.21 -8.57 -37.44 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -5.30 Total: 2.26 kcal Atomic # 6 Polarization: -32.35 SS G_CDS: -3.30 Total: -35.66 kcal Atomic # 7 Polarization: -25.85 SS G_CDS: 0.65 Total: -25.20 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.87 -8.57 -37.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261134618.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.582 kcal (2) G-P(sol) polarization free energy of solvation -28.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds