Wall clock time and date at job start Mon Mar 30 2020 03:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38234 * 119.99853 * 2 1 4 4 C 1.38233 * 119.99913 * 179.97438 * 3 2 1 5 5 C 1.38239 * 120.00294 * 0.07357 * 4 3 2 6 6 C 1.50695 * 120.00334 * 179.97438 * 5 4 3 7 7 C 1.53002 * 115.54829 * 245.40965 * 6 5 4 8 8 H 1.09001 * 109.47240 * 304.48288 * 7 6 5 9 9 C 1.52993 * 109.46994 * 64.48651 * 7 6 5 10 10 C 1.50703 * 109.46883 * 184.48323 * 7 6 5 11 11 H 1.08000 * 120.00202 * 354.42095 * 10 7 6 12 12 C 1.37878 * 119.99996 * 174.41567 * 10 7 6 13 13 N 1.31517 * 119.99518 * 0.02562 * 12 10 7 14 14 Si 1.86793 * 120.00076 * 179.97438 * 12 10 7 15 15 H 1.48507 * 109.47020 * 90.00602 * 14 12 10 16 16 H 1.48503 * 109.47032 * 210.00134 * 14 12 10 17 17 H 1.48495 * 109.47209 * 330.00424 * 14 12 10 18 18 C 1.53001 * 117.49887 * 99.74433 * 6 5 4 19 19 C 1.53000 * 117.49930 * 31.07966 * 6 5 4 20 20 C 1.38240 * 119.99346 * 359.90527 * 5 4 3 21 21 C 1.38234 * 120.00564 * 0.04839 * 20 5 4 22 22 H 1.09000 * 109.47106 * 89.99890 * 1 2 3 23 23 H 1.09000 * 109.47061 * 209.99643 * 1 2 3 24 24 H 1.08998 * 109.46682 * 329.99550 * 1 2 3 25 25 H 1.08001 * 119.99861 * 359.70455 * 3 2 1 26 26 H 1.07998 * 120.00283 * 179.97438 * 4 3 2 27 27 H 1.08999 * 109.47302 * 299.99621 * 9 7 6 28 28 H 1.09001 * 109.47424 * 59.99749 * 9 7 6 29 29 H 1.09000 * 109.47443 * 179.97438 * 9 7 6 30 30 H 0.97006 * 119.99341 * 180.02562 * 13 12 10 31 31 H 1.09002 * 117.49790 * 359.97438 * 18 6 5 32 32 H 1.08992 * 117.50186 * 145.02378 * 18 6 5 33 33 H 1.08996 * 117.50135 * 214.97555 * 19 6 5 34 34 H 1.09004 * 117.49827 * 359.97438 * 19 6 5 35 35 H 1.08005 * 119.99727 * 180.02562 * 20 5 4 36 36 H 1.07998 * 120.00494 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2718 0.0000 -0.0005 6 6 5.7788 0.0000 -0.0005 7 6 6.4386 -0.5733 -1.2562 8 1 6.0704 -1.5843 -1.4308 9 6 6.0980 0.3084 -2.4591 10 6 7.9332 -0.6088 -1.0666 11 1 8.3758 -0.1756 -0.1818 12 6 8.7357 -1.1945 -2.0226 13 7 8.1968 -1.7218 -3.1002 14 14 10.5884 -1.2379 -1.7879 15 1 10.9670 -2.4796 -1.0666 16 1 11.2560 -1.2129 -3.1142 17 1 11.0149 -0.0560 -0.9966 18 6 6.4852 -0.2308 1.3369 19 6 6.4852 1.1618 0.7011 20 6 3.5805 -1.1971 0.0000 21 6 2.1982 -1.1972 0.0004 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3632 0.8899 0.5139 25 1 1.6582 2.1325 -0.0048 26 1 4.1206 2.1324 0.0001 27 1 5.0170 0.3342 -2.5963 28 1 6.4662 1.3194 -2.2845 29 1 6.5684 -0.0997 -3.3537 30 1 8.7614 -2.1342 -3.7726 31 1 5.8600 -0.3822 2.2168 32 1 7.4203 -0.7906 1.3222 33 1 7.4203 1.5173 0.2684 34 1 5.8599 1.9263 1.1623 35 1 4.1206 -2.1325 -0.0004 36 1 1.6582 -2.1325 0.0003 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261160907.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:15 Heat of formation + Delta-G solvation = 31.340697 kcal Electronic energy + Delta-G solvation = -15843.991590 eV Core-core repulsion = 13486.060197 eV Total energy + Delta-G solvation = -2357.931393 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.39785 -37.06663 -33.04418 -31.92941 -30.52674 -29.78914 -26.78636 -24.94479 -22.91628 -22.15864 -21.11431 -20.81027 -18.41792 -16.13370 -15.64476 -14.98818 -14.70198 -14.49547 -13.84979 -13.57598 -13.24508 -13.00657 -12.46550 -12.18545 -12.05340 -11.70556 -11.31525 -11.04604 -10.91736 -10.75483 -10.62993 -10.51737 -10.38682 -10.07824 -9.73091 -9.25358 -8.88967 -8.68546 -8.49026 -8.24728 -7.86084 -5.96770 -4.00480 1.78740 1.83328 3.31521 3.38691 3.41140 4.17391 4.45780 4.71304 5.11486 5.17896 5.33161 5.36038 5.47681 5.55608 5.67688 5.81193 5.88107 5.92328 5.93483 6.12696 6.22885 6.42282 6.49218 6.50454 6.77298 6.82998 6.93677 6.95207 7.02862 7.10670 7.19430 7.33973 7.43190 7.46757 7.76320 8.01413 8.11983 8.48289 9.02161 9.63314 11.11346 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.043515 B = 0.006629 C = 0.006303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.298745 B = 4222.945672 C = 4441.107574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.109 4.109 3 C -0.124 4.124 4 C -0.115 4.115 5 C -0.024 4.024 6 C -0.075 4.075 7 C 0.085 3.915 8 H 0.033 0.967 9 C -0.126 4.126 10 C -0.512 4.512 11 H 0.062 0.938 12 C 0.061 3.939 13 N -0.890 5.890 14 Si 0.887 3.113 15 H -0.282 1.282 16 H -0.288 1.288 17 H -0.275 1.275 18 C -0.167 4.167 19 C -0.173 4.173 20 C -0.106 4.106 21 C -0.122 4.122 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.113 0.887 26 H 0.118 0.882 27 H 0.008 0.992 28 H 0.025 0.975 29 H 0.070 0.930 30 H 0.259 0.741 31 H 0.071 0.929 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.122 0.878 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.715 3.490 6.104 12.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.109 4.109 3 C -0.142 4.142 4 C -0.133 4.133 5 C -0.024 4.024 6 C -0.075 4.075 7 C 0.067 3.933 8 H 0.051 0.949 9 C -0.184 4.184 10 C -0.550 4.550 11 H 0.080 0.920 12 C -0.140 4.140 13 N -0.529 5.529 14 Si 0.715 3.285 15 H -0.208 1.208 16 H -0.214 1.214 17 H -0.200 1.200 18 C -0.204 4.204 19 C -0.210 4.210 20 C -0.124 4.124 21 C -0.140 4.140 22 H 0.083 0.917 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.132 0.868 26 H 0.136 0.864 27 H 0.027 0.973 28 H 0.044 0.956 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.124 0.876 33 H 0.119 0.881 34 H 0.092 0.908 35 H 0.140 0.860 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.666 3.400 5.932 12.670 hybrid contribution 1.069 -0.044 -0.030 1.070 sum -9.597 3.357 5.902 11.756 Atomic orbital electron populations 1.20713 0.91894 1.02060 1.01800 1.19770 0.95491 0.93406 1.02197 1.20900 0.94154 0.97022 1.02145 1.21038 0.93658 0.98019 1.00625 1.19383 0.94424 0.92563 0.96012 1.20574 0.87942 1.02694 0.96281 1.18167 0.93930 0.94381 0.86820 0.94909 1.21666 0.96178 0.98655 1.01915 1.21289 0.91227 1.37101 1.05396 0.91957 1.24957 0.98278 0.95444 0.95321 1.69941 1.34950 1.38581 1.09463 0.86672 0.86081 0.78351 0.77359 1.20791 1.21365 1.19960 1.23015 1.02846 0.99785 0.94722 1.22941 1.02829 0.90933 1.04282 1.21030 0.93588 0.98300 0.99513 1.20939 0.94190 0.97078 1.01804 0.91700 0.92035 0.92100 0.86846 0.86359 0.97297 0.95579 0.91133 0.93132 0.91003 0.87576 0.88084 0.90805 0.85991 0.86693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 10.01 36.01 0.36 -0.80 16 2 C -0.11 -1.56 5.88 -104.62 -0.62 -2.18 16 3 C -0.12 -1.85 9.70 -39.58 -0.38 -2.24 16 4 C -0.12 -1.96 9.23 -39.58 -0.37 -2.33 16 5 C -0.02 -0.45 4.48 -104.62 -0.47 -0.92 16 6 C -0.07 -1.56 1.70 -155.66 -0.26 -1.82 16 7 C 0.09 2.12 2.23 -91.77 -0.20 1.91 16 8 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 9 C -0.13 -3.11 8.88 37.15 0.33 -2.78 16 10 C -0.51 -13.60 7.10 -34.44 -0.24 -13.84 16 11 H 0.06 1.61 5.12 -52.49 -0.27 1.34 16 12 C 0.06 1.68 5.33 -17.82 -0.09 1.58 16 13 N -0.89 -25.57 11.74 55.43 0.65 -24.92 16 14 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 18 C -0.17 -3.25 9.39 -26.69 -0.25 -3.50 16 19 C -0.17 -3.32 8.92 -26.69 -0.24 -3.56 16 20 C -0.11 -1.90 9.66 -39.58 -0.38 -2.28 16 21 C -0.12 -1.88 9.70 -39.58 -0.38 -2.26 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 24 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 25 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 26 H 0.12 1.90 7.02 -52.49 -0.37 1.54 16 27 H 0.01 0.19 7.69 -51.93 -0.40 -0.21 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 1.90 6.53 -51.93 -0.34 1.56 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.11 2.20 6.53 -51.93 -0.34 1.86 16 33 H 0.10 2.08 6.94 -51.93 -0.36 1.72 16 34 H 0.07 1.25 7.13 -51.93 -0.37 0.88 16 35 H 0.12 2.19 8.06 -52.48 -0.42 1.77 16 36 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 292.98 15.07 4.42 4.42 Total: -1.00 -28.29 292.98 -8.54 -36.83 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -5.38 Total: 2.55 kcal Atomic # 6 Polarization: -31.80 SS G_CDS: -3.21 Total: -35.01 kcal Atomic # 7 Polarization: -25.57 SS G_CDS: 0.65 Total: -24.92 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.29 -8.54 -36.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261160907.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.168 kcal (2) G-P(sol) polarization free energy of solvation -28.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds