Wall clock time and date at job start Mon Mar 30 2020 03:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38234 * 119.99853 * 2 1 4 4 C 1.38233 * 119.99913 * 179.97438 * 3 2 1 5 5 C 1.38239 * 120.00294 * 0.07357 * 4 3 2 6 6 C 1.50695 * 120.00334 * 179.97438 * 5 4 3 7 7 C 1.53002 * 115.54829 * 245.40965 * 6 5 4 8 8 H 1.09001 * 109.47240 * 304.48288 * 7 6 5 9 9 C 1.52993 * 109.46994 * 64.48651 * 7 6 5 10 10 C 1.50703 * 109.46883 * 184.48323 * 7 6 5 11 11 H 1.08000 * 120.00202 * 354.42095 * 10 7 6 12 12 C 1.37878 * 119.99996 * 174.41567 * 10 7 6 13 13 N 1.31517 * 119.99518 * 0.02562 * 12 10 7 14 14 Si 1.86793 * 120.00076 * 179.97438 * 12 10 7 15 15 H 1.48507 * 109.47020 * 90.00602 * 14 12 10 16 16 H 1.48503 * 109.47032 * 210.00134 * 14 12 10 17 17 H 1.48495 * 109.47209 * 330.00424 * 14 12 10 18 18 C 1.53001 * 117.49887 * 99.74433 * 6 5 4 19 19 C 1.53000 * 117.49930 * 31.07966 * 6 5 4 20 20 C 1.38240 * 119.99346 * 359.90527 * 5 4 3 21 21 C 1.38234 * 120.00564 * 0.04839 * 20 5 4 22 22 H 1.09000 * 109.47106 * 89.99890 * 1 2 3 23 23 H 1.09000 * 109.47061 * 209.99643 * 1 2 3 24 24 H 1.08998 * 109.46682 * 329.99550 * 1 2 3 25 25 H 1.08001 * 119.99861 * 359.70455 * 3 2 1 26 26 H 1.07998 * 120.00283 * 179.97438 * 4 3 2 27 27 H 1.08999 * 109.47302 * 299.99621 * 9 7 6 28 28 H 1.09001 * 109.47424 * 59.99749 * 9 7 6 29 29 H 1.09000 * 109.47443 * 179.97438 * 9 7 6 30 30 H 0.97006 * 119.99341 * 180.02562 * 13 12 10 31 31 H 1.09002 * 117.49790 * 359.97438 * 18 6 5 32 32 H 1.08992 * 117.50186 * 145.02378 * 18 6 5 33 33 H 1.08996 * 117.50135 * 214.97555 * 19 6 5 34 34 H 1.09004 * 117.49827 * 359.97438 * 19 6 5 35 35 H 1.08005 * 119.99727 * 180.02562 * 20 5 4 36 36 H 1.07998 * 120.00494 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2718 0.0000 -0.0005 6 6 5.7788 0.0000 -0.0005 7 6 6.4386 -0.5733 -1.2562 8 1 6.0704 -1.5843 -1.4308 9 6 6.0980 0.3084 -2.4591 10 6 7.9332 -0.6088 -1.0666 11 1 8.3758 -0.1756 -0.1818 12 6 8.7357 -1.1945 -2.0226 13 7 8.1968 -1.7218 -3.1002 14 14 10.5884 -1.2379 -1.7879 15 1 10.9670 -2.4796 -1.0666 16 1 11.2560 -1.2129 -3.1142 17 1 11.0149 -0.0560 -0.9966 18 6 6.4852 -0.2308 1.3369 19 6 6.4852 1.1618 0.7011 20 6 3.5805 -1.1971 0.0000 21 6 2.1982 -1.1972 0.0004 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3632 0.8899 0.5139 25 1 1.6582 2.1325 -0.0048 26 1 4.1206 2.1324 0.0001 27 1 5.0170 0.3342 -2.5963 28 1 6.4662 1.3194 -2.2845 29 1 6.5684 -0.0997 -3.3537 30 1 8.7614 -2.1342 -3.7726 31 1 5.8600 -0.3822 2.2168 32 1 7.4203 -0.7906 1.3222 33 1 7.4203 1.5173 0.2684 34 1 5.8599 1.9263 1.1623 35 1 4.1206 -2.1325 -0.0004 36 1 1.6582 -2.1325 0.0003 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261160907.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:15 Heat of formation + Delta-G solvation = 18.715941 kcal Electronic energy + Delta-G solvation = -15844.539040 eV Core-core repulsion = 13486.060197 eV Total energy + Delta-G solvation = -2358.478843 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.76535 -38.55540 -35.00236 -33.12753 -31.91772 -31.62439 -27.98864 -26.94978 -24.46025 -23.60037 -22.58347 -22.28136 -20.01161 -18.10687 -17.16579 -16.69447 -15.97125 -15.83042 -15.53476 -14.89309 -14.46206 -14.43296 -14.14462 -13.84644 -13.13712 -13.10633 -12.93783 -12.72367 -12.66333 -12.46060 -12.26279 -12.13036 -12.01780 -11.80792 -11.41177 -10.97734 -10.66027 -10.63689 -10.22766 -9.73462 -9.17377 -8.07323 -6.17054 0.54293 0.58957 1.41238 1.42338 1.51758 2.44679 2.90660 3.15845 3.24668 3.90020 4.07535 4.15199 4.21175 4.26392 4.34270 4.56303 4.64962 4.74072 4.88496 4.90924 4.94011 4.97503 4.99485 5.06673 5.19757 5.25649 5.33052 5.40381 5.47238 5.53483 5.62893 5.69190 5.77250 5.85451 5.99168 6.09029 6.23500 6.42287 6.93866 7.50060 9.00519 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.043515 B = 0.006629 C = 0.006303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.298745 B = 4222.945672 C = 4441.107574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.104 4.104 3 C -0.123 4.123 4 C -0.124 4.124 5 C -0.049 4.049 6 C -0.086 4.086 7 C 0.086 3.914 8 H -0.007 1.007 9 C -0.112 4.112 10 C -0.518 4.518 11 H 0.067 0.933 12 C 0.008 3.992 13 N -0.924 5.924 14 Si 0.950 3.050 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.265 1.265 18 C -0.164 4.164 19 C -0.158 4.158 20 C -0.128 4.128 21 C -0.126 4.126 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.145 0.855 26 H 0.125 0.875 27 H 0.018 0.982 28 H 0.030 0.970 29 H 0.040 0.960 30 H 0.258 0.742 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.237 4.793 7.304 15.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.104 4.104 3 C -0.141 4.141 4 C -0.142 4.142 5 C -0.049 4.049 6 C -0.086 4.086 7 C 0.067 3.933 8 H 0.011 0.989 9 C -0.170 4.170 10 C -0.556 4.556 11 H 0.085 0.915 12 C -0.189 4.189 13 N -0.564 5.564 14 Si 0.776 3.224 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.190 1.190 18 C -0.201 4.201 19 C -0.195 4.195 20 C -0.146 4.146 21 C -0.143 4.143 22 H 0.093 0.907 23 H 0.093 0.907 24 H 0.097 0.903 25 H 0.162 0.838 26 H 0.143 0.857 27 H 0.037 0.963 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.188 4.709 7.146 14.893 hybrid contribution 1.446 -0.467 -0.404 1.572 sum -10.742 4.242 6.742 13.373 Atomic orbital electron populations 1.20786 0.88902 1.03684 1.02911 1.20245 0.97653 0.92641 0.99899 1.21274 0.93423 0.98643 1.00745 1.21175 0.94811 0.97386 1.00801 1.19289 0.93155 0.93791 0.98634 1.20318 0.89523 1.03897 0.94818 1.18009 0.93482 0.92640 0.89134 0.98882 1.21470 0.96424 0.98451 1.00609 1.21639 0.92384 1.36381 1.05239 0.91489 1.25744 1.02631 0.95388 0.95165 1.70085 1.36372 1.39661 1.10319 0.85677 0.80917 0.78600 0.77212 1.20395 1.21373 1.18984 1.22974 1.02170 0.99877 0.95032 1.22923 1.02141 0.91135 1.03305 1.21061 0.94969 0.97522 1.01086 1.21211 0.93185 0.98834 1.01118 0.90674 0.90741 0.90288 0.83773 0.85687 0.96330 0.95123 0.94060 0.93320 0.88897 0.89462 0.89681 0.87964 0.87724 0.84571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.84 10.01 71.24 0.71 -1.12 16 2 C -0.10 -2.67 5.88 -19.86 -0.12 -2.79 16 3 C -0.12 -3.27 9.70 22.27 0.22 -3.06 16 4 C -0.12 -3.97 9.23 22.27 0.21 -3.76 16 5 C -0.05 -1.82 4.48 -19.87 -0.09 -1.91 16 6 C -0.09 -3.58 1.70 -52.93 -0.09 -3.67 16 7 C 0.09 4.40 2.23 -11.54 -0.03 4.37 16 8 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 9 C -0.11 -5.64 8.88 71.98 0.64 -5.00 16 10 C -0.52 -28.17 7.10 25.60 0.18 -27.99 16 11 H 0.07 3.51 5.12 -2.91 -0.01 3.49 16 12 C 0.01 0.47 5.33 84.65 0.45 0.93 16 13 N -0.92 -54.82 11.74 21.45 0.25 -54.57 16 14 Si 0.95 44.03 29.54 68.60 2.03 46.06 16 15 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 16 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 18 C -0.16 -6.33 9.39 30.62 0.29 -6.05 16 19 C -0.16 -5.92 8.92 30.62 0.27 -5.65 16 20 C -0.13 -4.62 9.66 22.27 0.22 -4.40 16 21 C -0.13 -3.67 9.70 22.27 0.22 -3.45 16 22 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.07 1.12 8.09 -2.39 -0.02 1.10 16 24 H 0.08 1.11 8.09 -2.39 -0.02 1.09 16 25 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 26 H 0.13 3.73 7.02 -2.91 -0.02 3.71 16 27 H 0.02 0.85 7.69 -2.39 -0.02 0.83 16 28 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.04 2.29 6.53 -2.39 -0.02 2.28 16 30 H 0.26 14.62 8.31 -92.70 -0.77 13.85 16 31 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 32 H 0.09 3.68 6.53 -2.39 -0.02 3.66 16 33 H 0.08 3.45 6.94 -2.39 -0.02 3.43 16 34 H 0.10 3.22 7.13 -2.38 -0.02 3.21 16 35 H 0.10 3.98 8.06 -2.91 -0.02 3.96 16 36 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -61.97 292.98 6.40 -55.57 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 1.05 Total: 16.51 kcal Atomic # 6 Polarization: -66.64 SS G_CDS: 3.08 Total: -63.56 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 0.25 Total: -54.57 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -61.97 6.40 -55.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261160907.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.284 kcal (2) G-P(sol) polarization free energy of solvation -61.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds