Wall clock time and date at job start Mon Mar 30 2020 03:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47272 * 2 1 4 4 N 1.39872 * 125.45962 * 269.98086 * 3 2 1 5 5 C 1.30244 * 110.08019 * 180.02562 * 4 3 2 6 6 C 1.45928 * 107.79085 * 359.97438 * 5 4 3 7 7 C 1.39941 * 134.03465 * 180.02562 * 6 5 4 8 8 C 1.36465 * 119.63879 * 179.97438 * 7 6 5 9 9 C 1.38964 * 120.62776 * 359.97438 * 8 7 6 10 10 C 1.36601 * 120.81442 * 0.02562 * 9 8 7 11 11 C 1.50693 * 120.07147 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47352 * 265.39512 * 11 10 9 13 13 H 1.07996 * 119.99980 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99860 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00086 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99670 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47293 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47136 * 120.00328 * 16 14 12 19 19 H 1.48503 * 109.46941 * 239.99801 * 16 14 12 20 20 C 1.37038 * 125.46040 * 90.01878 * 3 2 1 21 21 H 1.09005 * 109.46933 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47130 * 299.99883 * 1 2 3 23 23 H 1.08998 * 109.47168 * 59.99636 * 1 2 3 24 24 H 1.09001 * 109.47130 * 240.00117 * 2 1 3 25 25 H 1.08998 * 109.47168 * 120.00363 * 2 1 3 26 26 H 1.08005 * 126.10458 * 179.97438 * 5 4 3 27 27 H 1.07998 * 120.17899 * 359.95542 * 7 6 5 28 28 H 1.08001 * 119.68452 * 179.72287 * 8 7 6 29 29 H 1.07995 * 119.59239 * 179.97438 * 9 8 7 30 30 H 1.08998 * 109.47460 * 25.39911 * 11 10 9 31 31 H 1.09004 * 109.47031 * 145.39445 * 11 10 9 32 32 H 0.97001 * 119.99767 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2893 2.1461 -1.1393 5 6 2.7083 3.3299 -0.7939 6 6 2.7281 3.3880 0.6641 7 6 3.0764 4.3744 1.5936 8 6 2.9808 4.1077 2.9285 9 6 2.5406 2.8667 3.3728 10 6 2.1949 1.8879 2.4849 11 6 1.7191 0.5484 2.9851 12 6 2.8828 -0.4072 3.0463 13 1 3.8684 -0.0775 2.7528 14 6 2.6891 -1.7026 3.4771 15 7 1.4888 -2.1043 3.8340 16 14 4.1317 -2.8869 3.5537 17 1 5.3653 -2.1943 3.1027 18 1 4.3116 -3.3582 4.9504 19 1 3.8648 -4.0498 2.6695 20 6 2.2838 2.1306 1.1162 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 2.9907 4.1264 -1.4665 27 1 3.4193 5.3414 1.2564 28 1 3.2538 4.8669 3.6466 29 1 2.4718 2.6735 4.4331 30 1 1.2907 0.6636 3.9807 31 1 0.9616 0.1555 2.3069 32 1 1.3526 -3.0155 4.1374 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261177859.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:23 Heat of formation + Delta-G solvation = 74.492345 kcal Electronic energy + Delta-G solvation = -15856.591431 eV Core-core repulsion = 13396.990890 eV Total energy + Delta-G solvation = -2459.600541 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.69591 -36.76118 -34.61983 -32.83318 -31.13056 -29.36227 -28.70283 -26.80112 -23.46782 -22.98965 -21.58812 -21.26343 -19.21928 -16.45781 -16.38395 -15.98645 -14.73615 -14.60800 -14.46101 -13.95626 -13.80933 -12.95576 -12.67416 -12.42638 -12.16966 -11.76275 -11.35744 -11.23695 -11.15333 -10.86482 -10.77059 -10.53262 -10.41761 -10.10831 -9.64962 -9.49643 -9.11250 -8.53008 -7.97709 -7.07039 -6.14313 -4.19781 1.62881 2.18700 3.03434 3.08663 3.21959 3.31086 3.36601 4.31519 4.52017 5.03195 5.12704 5.18074 5.41237 5.58644 5.67481 5.74378 5.79397 5.92306 6.05921 6.21010 6.24296 6.44176 6.51103 6.62380 6.75086 6.96079 7.09811 7.18100 7.42507 7.50411 7.66443 7.78110 7.82442 8.19884 8.26380 8.86808 9.44657 10.93211 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.024753 B = 0.009856 C = 0.008304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.893196 B = 2840.224582 C = 3371.220053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.117 3.883 3 N -0.386 5.386 4 N -0.264 5.264 5 C 0.050 3.950 6 C -0.189 4.189 7 C -0.076 4.076 8 C -0.152 4.152 9 C -0.097 4.097 10 C -0.052 4.052 11 C 0.041 3.959 12 C -0.513 4.513 13 H 0.057 0.943 14 C 0.062 3.938 15 N -0.888 5.888 16 Si 0.890 3.110 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.136 3.864 21 H 0.072 0.928 22 H 0.063 0.937 23 H 0.049 0.951 24 H 0.077 0.923 25 H 0.136 0.864 26 H 0.186 0.814 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.122 0.878 30 H 0.031 0.969 31 H 0.037 0.963 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.326 8.107 -4.950 9.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.004 4.004 3 N -0.174 5.174 4 N -0.078 5.078 5 C -0.146 4.146 6 C -0.197 4.197 7 C -0.097 4.097 8 C -0.172 4.172 9 C -0.118 4.118 10 C -0.055 4.055 11 C 0.004 3.996 12 C -0.552 4.552 13 H 0.075 0.925 14 C -0.140 4.140 15 N -0.527 5.527 16 Si 0.717 3.283 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.209 1.209 20 C 0.021 3.979 21 H 0.091 0.909 22 H 0.082 0.918 23 H 0.069 0.931 24 H 0.095 0.905 25 H 0.154 0.846 26 H 0.203 0.797 27 H 0.133 0.867 28 H 0.133 0.867 29 H 0.140 0.860 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.113 6.976 -5.895 9.134 hybrid contribution 0.963 -0.232 0.735 1.234 sum 0.850 6.744 -5.160 8.534 Atomic orbital electron populations 1.22163 0.95420 1.02574 1.01935 1.22118 0.94587 0.77510 1.06154 1.48322 1.56389 1.12140 1.00565 1.76401 1.16547 1.04348 1.10484 1.24810 1.01260 0.95382 0.93147 1.19879 1.11150 0.95604 0.93086 1.20032 1.00283 0.97269 0.92111 1.20562 1.04044 0.97480 0.95101 1.20594 0.99409 0.92405 0.99395 1.19511 0.99037 0.98523 0.88452 1.18524 0.96860 0.86933 0.97268 1.21088 0.94538 0.95108 1.44424 0.92514 1.24994 0.95738 0.98204 0.95088 1.69958 1.20852 1.17917 1.43948 0.86556 0.82877 0.80939 0.77904 1.19642 1.20801 1.20852 1.18734 0.98752 0.90868 0.89531 0.90894 0.91834 0.93149 0.90453 0.84599 0.79710 0.86712 0.86727 0.85965 0.95105 0.94505 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 9.76 37.16 0.36 -2.47 16 2 C 0.12 2.28 6.33 -4.04 -0.03 2.25 16 3 N -0.39 -7.97 3.65 -58.70 -0.21 -8.19 16 4 N -0.26 -5.05 12.40 31.87 0.40 -4.66 16 5 C 0.05 0.84 12.28 -15.15 -0.19 0.65 16 6 C -0.19 -3.53 6.37 -105.21 -0.67 -4.20 16 7 C -0.08 -1.24 10.07 -39.58 -0.40 -1.64 16 8 C -0.15 -2.52 9.97 -39.95 -0.40 -2.92 16 9 C -0.10 -1.88 9.59 -39.90 -0.38 -2.27 16 10 C -0.05 -1.14 5.05 -104.83 -0.53 -1.67 16 11 C 0.04 1.00 4.41 -29.04 -0.13 0.87 16 12 C -0.51 -13.62 7.60 -34.44 -0.26 -13.88 16 13 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -24.60 13.29 55.43 0.74 -23.86 16 16 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 C 0.14 2.90 6.79 -84.17 -0.57 2.33 16 21 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 22 H 0.06 1.19 7.05 -51.93 -0.37 0.83 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 25 H 0.14 3.05 4.62 -51.93 -0.24 2.81 16 26 H 0.19 2.21 8.06 -52.48 -0.42 1.78 16 27 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 28 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 29 H 0.12 2.23 8.05 -52.49 -0.42 1.81 16 30 H 0.03 0.80 8.05 -51.93 -0.42 0.38 16 31 H 0.04 0.92 4.46 -51.93 -0.23 0.68 16 32 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 270.73 15.07 4.08 4.08 Total: -1.00 -29.19 270.73 -7.07 -36.26 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -3.76 Total: 2.00 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -3.29 Total: -21.38 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.92 Total: -36.71 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.19 -7.07 -36.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261177859.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.747 kcal (2) G-P(sol) polarization free energy of solvation -29.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds