Wall clock time and date at job start Mon Mar 30 2020 03:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47272 * 2 1 4 4 N 1.39872 * 125.45962 * 269.98086 * 3 2 1 5 5 C 1.30244 * 110.08019 * 180.02562 * 4 3 2 6 6 C 1.45928 * 107.79085 * 359.97438 * 5 4 3 7 7 C 1.39941 * 134.03465 * 180.02562 * 6 5 4 8 8 C 1.36465 * 119.63879 * 179.97438 * 7 6 5 9 9 C 1.38964 * 120.62776 * 359.97438 * 8 7 6 10 10 C 1.36601 * 120.81442 * 0.02562 * 9 8 7 11 11 C 1.50693 * 120.07147 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47352 * 265.39512 * 11 10 9 13 13 H 1.07996 * 119.99980 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99860 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00086 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99670 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47293 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47136 * 120.00328 * 16 14 12 19 19 H 1.48503 * 109.46941 * 239.99801 * 16 14 12 20 20 C 1.37038 * 125.46040 * 90.01878 * 3 2 1 21 21 H 1.09005 * 109.46933 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47130 * 299.99883 * 1 2 3 23 23 H 1.08998 * 109.47168 * 59.99636 * 1 2 3 24 24 H 1.09001 * 109.47130 * 240.00117 * 2 1 3 25 25 H 1.08998 * 109.47168 * 120.00363 * 2 1 3 26 26 H 1.08005 * 126.10458 * 179.97438 * 5 4 3 27 27 H 1.07998 * 120.17899 * 359.95542 * 7 6 5 28 28 H 1.08001 * 119.68452 * 179.72287 * 8 7 6 29 29 H 1.07995 * 119.59239 * 179.97438 * 9 8 7 30 30 H 1.08998 * 109.47460 * 25.39911 * 11 10 9 31 31 H 1.09004 * 109.47031 * 145.39445 * 11 10 9 32 32 H 0.97001 * 119.99767 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2893 2.1461 -1.1393 5 6 2.7083 3.3299 -0.7939 6 6 2.7281 3.3880 0.6641 7 6 3.0764 4.3744 1.5936 8 6 2.9808 4.1077 2.9285 9 6 2.5406 2.8667 3.3728 10 6 2.1949 1.8879 2.4849 11 6 1.7191 0.5484 2.9851 12 6 2.8828 -0.4072 3.0463 13 1 3.8684 -0.0775 2.7528 14 6 2.6891 -1.7026 3.4771 15 7 1.4888 -2.1043 3.8340 16 14 4.1317 -2.8869 3.5537 17 1 5.3653 -2.1943 3.1027 18 1 4.3116 -3.3582 4.9504 19 1 3.8648 -4.0498 2.6695 20 6 2.2838 2.1306 1.1162 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 2.9907 4.1264 -1.4665 27 1 3.4193 5.3414 1.2564 28 1 3.2538 4.8669 3.6466 29 1 2.4718 2.6735 4.4331 30 1 1.2907 0.6636 3.9807 31 1 0.9616 0.1555 2.3069 32 1 1.3526 -3.0155 4.1374 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261177859.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:23 Heat of formation + Delta-G solvation = 58.151709 kcal Electronic energy + Delta-G solvation = -15857.300014 eV Core-core repulsion = 13396.990890 eV Total energy + Delta-G solvation = -2460.309124 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.12442 -38.20969 -36.24694 -34.66280 -32.74337 -30.83650 -30.21183 -28.52888 -25.28442 -24.45786 -23.07702 -22.75707 -20.68266 -18.50367 -17.83631 -17.47044 -16.55691 -16.09005 -15.95442 -15.48810 -15.20328 -14.47374 -14.42632 -14.05373 -13.64775 -13.38748 -12.99243 -12.91876 -12.72337 -12.46057 -12.39612 -12.26650 -11.99325 -11.66015 -11.52528 -11.20872 -10.68874 -10.60118 -9.44168 -8.58718 -8.16403 -6.32311 0.20411 0.76578 1.34950 1.37959 1.49042 1.60329 1.71663 2.37470 3.05020 3.09024 3.65379 3.82064 4.00336 4.18706 4.23118 4.29920 4.43965 4.54454 4.61610 4.76171 4.86126 4.98441 5.05796 5.13183 5.24903 5.34363 5.43059 5.70708 5.73332 5.74969 5.97121 6.12609 6.16488 6.30178 6.78158 6.84283 7.35006 8.87240 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.024753 B = 0.009856 C = 0.008304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.893196 B = 2840.224582 C = 3371.220053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.118 3.882 3 N -0.406 5.406 4 N -0.287 5.287 5 C 0.073 3.927 6 C -0.204 4.204 7 C -0.056 4.056 8 C -0.154 4.154 9 C -0.099 4.099 10 C -0.094 4.094 11 C 0.053 3.947 12 C -0.518 4.518 13 H 0.041 0.959 14 C 0.018 3.982 15 N -0.918 5.918 16 Si 0.950 3.050 17 H -0.273 1.273 18 H -0.276 1.276 19 H -0.275 1.275 20 C 0.108 3.892 21 H 0.084 0.916 22 H 0.041 0.959 23 H 0.063 0.937 24 H 0.090 0.910 25 H 0.101 0.899 26 H 0.238 0.762 27 H 0.164 0.836 28 H 0.154 0.846 29 H 0.122 0.878 30 H 0.002 0.998 31 H 0.025 0.975 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.625 10.220 -6.027 11.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.003 4.003 3 N -0.194 5.194 4 N -0.100 5.100 5 C -0.123 4.123 6 C -0.212 4.212 7 C -0.076 4.076 8 C -0.174 4.174 9 C -0.120 4.120 10 C -0.098 4.098 11 C 0.017 3.983 12 C -0.556 4.556 13 H 0.059 0.941 14 C -0.181 4.181 15 N -0.557 5.557 16 Si 0.775 3.225 17 H -0.198 1.198 18 H -0.202 1.202 19 H -0.200 1.200 20 C -0.007 4.007 21 H 0.103 0.897 22 H 0.060 0.940 23 H 0.083 0.917 24 H 0.109 0.891 25 H 0.119 0.881 26 H 0.254 0.746 27 H 0.181 0.819 28 H 0.172 0.828 29 H 0.140 0.860 30 H 0.020 0.980 31 H 0.043 0.957 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.183 9.088 -6.970 11.514 hybrid contribution 0.582 -0.747 1.060 1.421 sum 1.765 8.341 -5.911 10.374 Atomic orbital electron populations 1.22044 0.94207 1.03186 1.01385 1.21953 0.95605 0.77822 1.04947 1.48398 1.57628 1.12397 1.00960 1.76383 1.18061 1.05430 1.10110 1.25666 0.98368 0.95403 0.92903 1.20350 1.11208 0.95058 0.94557 1.20591 0.97334 0.98334 0.91353 1.20938 1.03187 0.96798 0.96430 1.20829 0.98644 0.93383 0.99152 1.19354 1.02616 0.98026 0.89791 1.18241 0.95947 0.88815 0.95343 1.21189 0.94364 0.95935 1.44112 0.94061 1.25691 0.98034 0.99633 0.94761 1.70052 1.22507 1.18411 1.44764 0.85621 0.79760 0.78976 0.78096 1.19788 1.20193 1.19994 1.18994 0.99734 0.92602 0.89367 0.89720 0.94023 0.91749 0.89147 0.88095 0.74579 0.81864 0.82798 0.86043 0.98015 0.95676 0.92515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.39 9.76 71.98 0.70 -4.69 16 2 C 0.12 4.76 6.33 86.38 0.55 5.30 16 3 N -0.41 -16.87 3.65 -339.64 -1.24 -18.11 16 4 N -0.29 -10.52 12.40 -53.09 -0.66 -11.17 16 5 C 0.07 2.18 12.28 86.92 1.07 3.25 16 6 C -0.20 -7.06 6.37 -20.24 -0.13 -7.19 16 7 C -0.06 -1.58 10.07 22.27 0.22 -1.36 16 8 C -0.15 -4.62 9.97 22.03 0.22 -4.40 16 9 C -0.10 -3.84 9.59 22.06 0.21 -3.63 16 10 C -0.09 -4.27 5.05 -20.00 -0.10 -4.37 16 11 C 0.05 2.78 4.41 29.10 0.13 2.91 16 12 C -0.52 -28.72 7.60 25.60 0.19 -28.53 16 13 H 0.04 2.36 7.74 -2.91 -0.02 2.34 16 14 C 0.02 1.00 5.46 84.66 0.46 1.47 16 15 N -0.92 -52.58 13.29 21.45 0.28 -52.29 16 16 Si 0.95 43.47 29.54 68.60 2.03 45.50 16 17 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 18 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 20 C 0.11 4.60 6.79 39.21 0.27 4.87 16 21 H 0.08 2.76 8.14 -2.38 -0.02 2.74 16 22 H 0.04 1.65 7.05 -2.39 -0.02 1.63 16 23 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 25 H 0.10 4.81 4.62 -2.39 -0.01 4.80 16 26 H 0.24 4.26 8.06 -2.91 -0.02 4.24 16 27 H 0.16 3.04 8.06 -2.91 -0.02 3.01 16 28 H 0.15 3.38 8.06 -2.91 -0.02 3.35 16 29 H 0.12 4.53 8.05 -2.91 -0.02 4.51 16 30 H 0.00 0.09 8.05 -2.39 -0.02 0.07 16 31 H 0.03 1.35 4.46 -2.39 -0.01 1.33 16 32 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -65.65 270.73 5.32 -60.33 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 1.12 Total: 12.12 kcal Atomic # 6 Polarization: -40.16 SS G_CDS: 3.79 Total: -36.37 kcal Atomic # 7 Polarization: -79.96 SS G_CDS: -1.61 Total: -81.57 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -65.65 5.32 -60.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261177859.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.478 kcal (2) G-P(sol) polarization free energy of solvation -65.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds