Wall clock time and date at job start Mon Mar 30 2020 02:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47075 * 2 1 4 4 N 1.46498 * 109.47004 * 239.99997 * 2 1 3 5 5 C 1.34536 * 123.98093 * 84.72318 * 4 2 1 6 6 C 1.37833 * 106.95784 * 179.89626 * 5 4 2 7 7 C 1.45562 * 135.79311 * 180.02562 * 6 5 4 8 8 C 1.35183 * 119.44163 * 180.30285 * 7 6 5 9 9 C 1.45985 * 120.80915 * 359.97438 * 8 7 6 10 10 C 1.40961 * 119.42714 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99608 * 154.53007 * 10 9 8 12 12 C 1.39860 * 119.99921 * 334.53422 * 10 9 8 13 13 N 1.30885 * 119.99905 * 342.26614 * 12 10 9 14 14 Si 1.86797 * 119.99947 * 162.27104 * 12 10 9 15 15 H 1.48503 * 109.46921 * 94.84623 * 14 12 10 16 16 H 1.48500 * 109.47036 * 214.84651 * 14 12 10 17 17 H 1.48497 * 109.47273 * 334.84326 * 14 12 10 18 18 C 1.39808 * 121.15017 * 359.97438 * 9 8 7 19 19 C 1.40085 * 119.86778 * 0.03768 * 18 9 8 20 20 N 1.28478 * 123.98479 * 265.02574 * 4 2 1 21 21 H 1.09001 * 109.46920 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47195 * 60.00261 * 1 2 3 23 23 H 1.09003 * 109.46973 * 299.99590 * 1 2 3 24 24 H 1.09000 * 109.47122 * 120.00251 * 2 1 3 25 25 H 1.09003 * 109.47375 * 59.99763 * 3 2 1 26 26 H 1.09000 * 109.47168 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47351 * 300.00111 * 3 2 1 28 28 H 1.08004 * 126.52631 * 0.04081 * 5 4 2 29 29 H 1.07995 * 120.27545 * 0.32529 * 7 6 5 30 30 H 1.08002 * 119.59608 * 179.97438 * 8 7 6 31 31 H 0.96995 * 119.99847 * 180.02562 * 13 12 10 32 32 H 1.07996 * 120.06665 * 180.02562 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1722 -0.1001 -2.3952 6 6 2.6487 -1.0626 -3.2591 7 6 3.0243 -1.1093 -4.6647 8 6 3.4613 -2.2724 -5.1974 9 6 3.5610 -3.4782 -4.3805 10 6 4.0199 -4.6754 -4.9661 11 1 4.4847 -5.4330 -4.3526 12 6 3.8734 -4.8821 -6.3416 13 7 3.0251 -4.1571 -7.0256 14 14 4.8882 -6.1930 -7.2023 15 1 4.1037 -7.4511 -7.2855 16 1 5.2324 -5.7328 -8.5716 17 1 6.1354 -6.4372 -6.4342 18 6 3.2091 -3.4662 -3.0275 19 6 2.7511 -2.2817 -2.4362 20 7 2.3448 -1.9329 -1.2252 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5138 0.8901 24 1 1.8934 -0.5139 0.8900 25 1 1.6766 1.9564 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.9644 0.9323 -2.6347 29 1 2.9547 -0.2222 -5.2766 30 1 3.7402 -2.3099 -6.2401 31 1 2.9232 -4.3008 -7.9794 32 1 3.2900 -4.3684 -2.4394 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261180287.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:38 Heat of formation + Delta-G solvation = 80.896103 kcal Electronic energy + Delta-G solvation = -15257.158110 eV Core-core repulsion = 12797.835258 eV Total energy + Delta-G solvation = -2459.322853 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.11519 -36.42471 -34.85785 -32.90699 -30.46037 -28.96744 -28.19246 -27.21126 -25.53513 -22.77875 -20.80485 -20.18476 -18.96733 -17.42019 -16.46814 -15.43389 -15.16071 -14.98993 -14.08286 -13.97972 -13.20669 -12.90025 -12.65309 -12.39214 -12.28194 -12.10092 -11.54084 -11.36960 -11.16925 -11.09303 -10.76338 -10.74603 -10.33192 -9.95423 -9.81424 -9.16821 -8.80921 -8.71532 -7.20999 -6.91207 -6.45731 -4.29277 2.16411 2.91229 3.06900 3.13056 3.35397 3.39733 3.84861 3.91756 4.60425 4.66176 4.95235 5.10298 5.39517 5.42539 5.61856 5.64538 5.69251 5.76032 5.85994 6.11972 6.14747 6.28961 6.56863 6.82415 6.91776 7.04014 7.16497 7.57963 7.77073 7.92183 8.02903 8.19945 8.24437 8.51889 8.88628 8.97431 9.45303 10.12033 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.065127 B = 0.005719 C = 0.005508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.828522 B = 4894.540135 C = 5082.452931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 C -0.161 4.161 4 N -0.281 5.281 5 C -0.025 4.025 6 C -0.206 4.206 7 C -0.109 4.109 8 C -0.087 4.087 9 C 0.132 3.868 10 C -0.446 4.446 11 H 0.083 0.917 12 C 0.075 3.925 13 N -0.793 5.793 14 Si 0.911 3.089 15 H -0.269 1.269 16 H -0.275 1.275 17 H -0.259 1.259 18 C -0.288 4.288 19 C 0.131 3.869 20 N -0.376 5.376 21 H 0.065 0.935 22 H 0.061 0.939 23 H 0.071 0.929 24 H 0.098 0.902 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.159 0.841 29 H 0.097 0.903 30 H 0.125 0.875 31 H 0.283 0.717 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.021 8.372 5.595 10.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.045 3.955 3 C -0.219 4.219 4 N -0.062 5.062 5 C -0.174 4.174 6 C -0.216 4.216 7 C -0.129 4.129 8 C -0.106 4.106 9 C 0.126 3.874 10 C -0.477 4.477 11 H 0.101 0.899 12 C -0.143 4.143 13 N -0.418 5.418 14 Si 0.735 3.265 15 H -0.195 1.195 16 H -0.200 1.200 17 H -0.183 1.183 18 C -0.313 4.313 19 C -0.015 4.015 20 N -0.209 5.209 21 H 0.084 0.916 22 H 0.080 0.920 23 H 0.090 0.910 24 H 0.117 0.883 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.176 0.824 29 H 0.116 0.884 30 H 0.142 0.858 31 H 0.093 0.907 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.373 8.071 6.659 10.729 hybrid contribution 0.373 -0.160 -1.299 1.361 sum -2.001 7.911 5.359 9.763 Atomic orbital electron populations 1.22207 0.94028 1.03299 1.02512 1.21210 0.94760 0.92775 0.86765 1.22159 1.02308 0.94358 1.03111 1.44980 1.46829 1.06638 1.07754 1.22117 1.09911 0.98695 0.86668 1.20444 1.11537 0.94173 0.95437 1.20727 1.03749 0.97349 0.91084 1.22219 0.97692 0.91302 0.99396 1.18221 0.87014 0.91919 0.90234 1.19582 1.33429 1.02293 0.92385 0.89908 1.25993 0.93691 0.96869 0.97774 1.69850 1.26641 1.35760 1.09563 0.86255 0.81000 0.80572 0.78705 1.19464 1.19981 1.18268 1.19371 1.22049 0.93998 0.95889 1.20475 0.98039 0.94930 0.88071 1.73512 1.28672 0.95831 1.22878 0.91583 0.91953 0.91017 0.88348 0.90560 0.91566 0.91510 0.82390 0.88447 0.85771 0.90660 0.88917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 9.51 37.16 0.35 -1.59 16 2 C 0.15 2.05 3.74 -67.93 -0.25 1.80 16 3 C -0.16 -1.70 8.78 37.16 0.33 -1.37 16 4 N -0.28 -5.56 3.19 -54.30 -0.17 -5.74 16 5 C -0.02 -0.49 10.58 -16.51 -0.17 -0.67 16 6 C -0.21 -4.97 6.60 -103.38 -0.68 -5.66 16 7 C -0.11 -2.58 10.26 -37.75 -0.39 -2.97 16 8 C -0.09 -2.23 8.69 -37.57 -0.33 -2.56 16 9 C 0.13 3.64 5.67 -105.18 -0.60 3.05 16 10 C -0.45 -11.92 8.98 -37.94 -0.34 -12.26 16 11 H 0.08 2.14 7.91 -52.49 -0.41 1.73 16 12 C 0.08 1.85 5.12 -17.35 -0.09 1.76 16 13 N -0.79 -20.00 10.93 55.54 0.61 -19.39 16 14 Si 0.91 18.31 29.59 -169.99 -5.03 13.28 16 15 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 16 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 17 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 18 C -0.29 -7.96 9.80 -38.30 -0.38 -8.34 16 19 C 0.13 3.46 7.50 -83.18 -0.62 2.84 16 20 N -0.38 -9.11 11.93 33.17 0.40 -8.72 16 21 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 25 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.07 0.67 6.97 -51.93 -0.36 0.31 16 28 H 0.16 2.49 7.08 -52.48 -0.37 2.11 16 29 H 0.10 1.99 8.06 -52.49 -0.42 1.56 16 30 H 0.12 3.16 6.22 -52.49 -0.33 2.84 16 31 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 32 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 LS Contribution 273.65 15.07 4.12 4.12 Total: -1.00 -30.71 273.65 -7.24 -37.94 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -3.99 Total: 4.46 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: -3.17 Total: -25.97 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 0.83 Total: -33.84 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.71 -7.24 -37.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261180287.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.841 kcal (2) G-P(sol) polarization free energy of solvation -30.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds