Wall clock time and date at job start Mon Mar 30 2020 03:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46504 * 109.47149 * 2 1 4 4 N 1.39968 * 125.06298 * 269.97796 * 3 2 1 5 5 C 1.31231 * 109.10192 * 180.02562 * 4 3 2 6 6 C 1.47085 * 107.03771 * 359.96301 * 5 4 3 7 7 C 1.40865 * 118.98779 * 179.97438 * 6 5 4 8 8 C 1.37530 * 120.66009 * 0.04735 * 7 6 5 9 9 C 1.38136 * 122.50749 * 359.97438 * 8 7 6 10 10 C 1.40408 * 121.20597 * 359.97438 * 9 8 7 11 11 C 1.40210 * 120.74322 * 179.73015 * 10 9 8 12 12 H 1.07994 * 119.99794 * 150.32955 * 11 10 9 13 13 C 1.40014 * 119.99692 * 330.31999 * 11 10 9 14 14 N 1.30831 * 119.99525 * 161.61045 * 13 11 10 15 15 Si 1.86796 * 120.00275 * 341.61666 * 13 11 10 16 16 H 1.48504 * 109.47308 * 95.39508 * 15 13 11 17 17 H 1.48502 * 109.47188 * 215.39662 * 15 13 11 18 18 H 1.48500 * 109.47133 * 335.39481 * 15 13 11 19 19 C 1.34224 * 125.06734 * 90.00012 * 3 2 1 20 20 C 1.50703 * 126.13263 * 359.95865 * 19 3 2 21 21 H 1.09003 * 109.47271 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47055 * 299.99951 * 1 2 3 23 23 H 1.08999 * 109.47037 * 59.99830 * 1 2 3 24 24 H 1.09002 * 109.47055 * 240.00049 * 2 1 3 25 25 H 1.09000 * 109.47752 * 119.99574 * 2 1 3 26 26 H 1.07997 * 119.67021 * 180.02562 * 7 6 5 27 27 H 1.08001 * 118.74287 * 179.97438 * 8 7 6 28 28 H 1.08001 * 119.39626 * 179.97438 * 9 8 7 29 29 H 0.97008 * 119.99726 * 179.97438 * 14 13 11 30 30 H 1.08997 * 109.46874 * 270.02323 * 20 19 3 31 31 H 1.09004 * 109.46990 * 30.02551 * 20 19 3 32 32 H 1.08995 * 109.46975 * 150.02515 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2867 2.1392 -1.1457 5 6 2.7077 3.3286 -0.7848 6 6 2.7159 3.3550 0.6858 7 6 3.1315 4.5284 1.3452 8 6 3.5234 5.6346 0.6280 9 6 3.5326 5.6589 -0.7531 10 6 3.1373 4.5396 -1.5030 11 6 3.1451 4.5769 -2.9046 12 1 3.3161 3.6715 -3.4679 13 6 2.9309 5.7879 -3.5739 14 7 3.2843 5.9140 -4.8272 15 14 2.1409 7.2236 -2.6773 16 1 3.1999 8.1207 -2.1492 17 1 1.2758 7.9794 -3.6184 18 1 1.3187 6.7121 -1.5514 19 6 2.2754 2.1083 1.0986 20 6 2.1126 1.6507 2.5252 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5137 0.8900 26 1 3.1422 4.5598 2.4246 27 1 3.8358 6.5179 1.1652 28 1 3.8497 6.5552 -1.2654 29 1 3.1356 6.7529 -5.2911 30 1 1.1046 1.8832 2.8686 31 1 2.2770 0.5747 2.5826 32 1 2.8386 2.1633 3.1562 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261182698.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:53 Heat of formation + Delta-G solvation = 77.042936 kcal Electronic energy + Delta-G solvation = -15583.341778 eV Core-core repulsion = 13123.851839 eV Total energy + Delta-G solvation = -2459.489939 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.17351 -36.25155 -33.85106 -33.08306 -31.88217 -29.85529 -28.53332 -26.28755 -24.68533 -23.76985 -21.10243 -20.49254 -18.59694 -17.36604 -15.96731 -15.62647 -15.31259 -14.62907 -14.11496 -13.80596 -13.47096 -12.83512 -12.64140 -12.54846 -12.34345 -12.09647 -11.94155 -11.57093 -11.27723 -11.11847 -10.86751 -10.70600 -10.29673 -9.92218 -9.71780 -9.35105 -9.02858 -8.74422 -7.48861 -7.12412 -6.62797 -4.33812 1.80463 3.05118 3.10126 3.16184 3.19220 3.36212 3.53958 3.98964 4.51576 4.83211 5.15448 5.21543 5.31297 5.38259 5.49860 5.54453 5.64079 5.83365 5.92067 6.05342 6.14136 6.21611 6.40983 6.66624 6.73453 6.98262 7.02735 7.25670 7.66516 7.78405 7.85206 8.05638 8.12925 8.28953 8.46268 8.65514 8.89795 9.86182 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.030818 B = 0.008926 C = 0.007523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.350787 B = 3135.980515 C = 3721.200295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.130 3.870 3 N -0.354 5.354 4 N -0.289 5.289 5 C 0.083 3.917 6 C -0.129 4.129 7 C -0.240 4.240 8 C -0.041 4.041 9 C -0.323 4.323 10 C 0.131 3.869 11 C -0.390 4.390 12 H 0.097 0.903 13 C 0.079 3.921 14 N -0.785 5.785 15 Si 0.926 3.074 16 H -0.267 1.267 17 H -0.294 1.294 18 H -0.240 1.240 19 C 0.010 3.990 20 C -0.069 4.069 21 H 0.070 0.930 22 H 0.059 0.941 23 H 0.065 0.935 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.100 0.900 29 H 0.291 0.709 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.910 -6.256 9.011 11.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.008 3.992 3 N -0.136 5.136 4 N -0.113 5.113 5 C -0.076 4.076 6 C -0.138 4.138 7 C -0.261 4.261 8 C -0.061 4.061 9 C -0.346 4.346 10 C 0.124 3.876 11 C -0.418 4.418 12 H 0.115 0.885 13 C -0.143 4.143 14 N -0.407 5.407 15 Si 0.752 3.248 16 H -0.193 1.193 17 H -0.222 1.222 18 H -0.163 1.163 19 C -0.118 4.118 20 C -0.127 4.127 21 H 0.088 0.912 22 H 0.078 0.922 23 H 0.084 0.916 24 H 0.108 0.892 25 H 0.103 0.897 26 H 0.107 0.893 27 H 0.105 0.895 28 H 0.118 0.882 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.198 -7.098 7.734 11.306 hybrid contribution -0.107 1.083 0.820 1.363 sum -4.305 -6.015 8.554 11.309 Atomic orbital electron populations 1.22174 0.94926 1.02244 1.03283 1.21473 0.94827 0.79325 1.03541 1.48195 1.50794 1.11238 1.03411 1.77119 1.24596 1.04939 1.04611 1.22434 0.99296 0.92927 0.92933 1.19122 1.07828 0.93902 0.92998 1.19368 1.17005 0.93373 0.96339 1.20071 0.96408 0.95690 0.93886 1.20132 1.21486 0.99774 0.93188 1.17674 0.90539 0.87219 0.92122 1.19520 1.35313 0.96382 0.90559 0.88473 1.26405 0.92895 1.00138 0.94881 1.69692 1.31965 1.27855 1.11190 0.85994 0.80162 0.79027 0.79594 1.19260 1.22171 1.16256 1.20631 1.08407 0.93172 0.89597 1.20149 1.02263 1.00228 0.90079 0.91153 0.92236 0.91560 0.89223 0.89692 0.89345 0.89476 0.88234 0.89835 0.91629 0.92394 0.90555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 10.24 37.15 0.38 -1.66 16 2 C 0.13 1.82 6.87 -4.04 -0.03 1.79 16 3 N -0.35 -7.03 3.56 -56.49 -0.20 -7.23 16 4 N -0.29 -7.12 12.50 34.42 0.43 -6.69 16 5 C 0.08 2.19 7.46 -80.90 -0.60 1.58 16 6 C -0.13 -3.05 6.26 -105.21 -0.66 -3.71 16 7 C -0.24 -5.44 10.09 -38.85 -0.39 -5.84 16 8 C -0.04 -0.95 9.87 -39.88 -0.39 -1.35 16 9 C -0.32 -8.25 7.14 -38.80 -0.28 -8.53 16 10 C 0.13 3.54 5.26 -104.70 -0.55 2.99 16 11 C -0.39 -10.87 9.59 -38.18 -0.37 -11.24 16 12 H 0.10 2.86 8.06 -52.49 -0.42 2.44 16 13 C 0.08 2.08 5.40 -17.31 -0.09 1.98 16 14 N -0.79 -20.60 13.93 55.55 0.77 -19.82 16 15 Si 0.93 21.30 24.53 -169.99 -4.17 17.13 16 16 H -0.27 -5.92 6.72 56.52 0.38 -5.54 16 17 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.24 -5.78 6.87 56.52 0.39 -5.39 16 19 C 0.01 0.19 7.00 -81.44 -0.57 -0.38 16 20 C -0.07 -0.96 10.10 36.01 0.36 -0.60 16 21 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.08 0.93 6.92 -51.93 -0.36 0.57 16 26 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 27 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 28 H 0.10 2.49 4.72 -52.49 -0.25 2.24 16 29 H 0.29 6.82 8.30 -40.82 -0.34 6.49 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.66 6.97 -51.93 -0.36 0.30 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 270.42 15.07 4.08 4.08 Total: -1.00 -30.70 270.42 -6.22 -36.93 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -3.94 Total: 0.55 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: -3.19 Total: -24.94 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: 1.00 Total: -33.74 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.17 Total: 17.13 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.70 -6.22 -36.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261182698.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.969 kcal (2) G-P(sol) polarization free energy of solvation -30.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds