Wall clock time and date at job start Mon Mar 30 2020 03:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46504 * 109.47149 * 2 1 4 4 N 1.39968 * 125.06298 * 269.97796 * 3 2 1 5 5 C 1.31231 * 109.10192 * 180.02562 * 4 3 2 6 6 C 1.47085 * 107.03771 * 359.96301 * 5 4 3 7 7 C 1.40865 * 118.98779 * 179.97438 * 6 5 4 8 8 C 1.37530 * 120.66009 * 0.04735 * 7 6 5 9 9 C 1.38136 * 122.50749 * 359.97438 * 8 7 6 10 10 C 1.40408 * 121.20597 * 359.97438 * 9 8 7 11 11 C 1.40210 * 120.74322 * 179.73015 * 10 9 8 12 12 H 1.07994 * 119.99794 * 150.32955 * 11 10 9 13 13 C 1.40014 * 119.99692 * 330.31999 * 11 10 9 14 14 N 1.30831 * 119.99525 * 161.61045 * 13 11 10 15 15 Si 1.86796 * 120.00275 * 341.61666 * 13 11 10 16 16 H 1.48504 * 109.47308 * 95.39508 * 15 13 11 17 17 H 1.48502 * 109.47188 * 215.39662 * 15 13 11 18 18 H 1.48500 * 109.47133 * 335.39481 * 15 13 11 19 19 C 1.34224 * 125.06734 * 90.00012 * 3 2 1 20 20 C 1.50703 * 126.13263 * 359.95865 * 19 3 2 21 21 H 1.09003 * 109.47271 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47055 * 299.99951 * 1 2 3 23 23 H 1.08999 * 109.47037 * 59.99830 * 1 2 3 24 24 H 1.09002 * 109.47055 * 240.00049 * 2 1 3 25 25 H 1.09000 * 109.47752 * 119.99574 * 2 1 3 26 26 H 1.07997 * 119.67021 * 180.02562 * 7 6 5 27 27 H 1.08001 * 118.74287 * 179.97438 * 8 7 6 28 28 H 1.08001 * 119.39626 * 179.97438 * 9 8 7 29 29 H 0.97008 * 119.99726 * 179.97438 * 14 13 11 30 30 H 1.08997 * 109.46874 * 270.02323 * 20 19 3 31 31 H 1.09004 * 109.46990 * 30.02551 * 20 19 3 32 32 H 1.08995 * 109.46975 * 150.02515 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2867 2.1392 -1.1457 5 6 2.7077 3.3286 -0.7848 6 6 2.7159 3.3550 0.6858 7 6 3.1315 4.5284 1.3452 8 6 3.5234 5.6346 0.6280 9 6 3.5326 5.6589 -0.7531 10 6 3.1373 4.5396 -1.5030 11 6 3.1451 4.5769 -2.9046 12 1 3.3161 3.6715 -3.4679 13 6 2.9309 5.7879 -3.5739 14 7 3.2843 5.9140 -4.8272 15 14 2.1409 7.2236 -2.6773 16 1 3.1999 8.1207 -2.1492 17 1 1.2758 7.9794 -3.6184 18 1 1.3187 6.7121 -1.5514 19 6 2.2754 2.1083 1.0986 20 6 2.1126 1.6507 2.5252 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5137 0.8900 26 1 3.1422 4.5598 2.4246 27 1 3.8358 6.5179 1.1652 28 1 3.8497 6.5552 -1.2654 29 1 3.1356 6.7529 -5.2911 30 1 1.1046 1.8832 2.8686 31 1 2.2770 0.5747 2.5826 32 1 2.8386 2.1633 3.1562 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261182698.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:53 Heat of formation + Delta-G solvation = 56.937268 kcal Electronic energy + Delta-G solvation = -15584.213625 eV Core-core repulsion = 13123.851839 eV Total energy + Delta-G solvation = -2460.361786 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.87024 -38.02577 -35.61210 -34.59415 -33.46180 -31.55700 -30.05003 -27.84743 -26.51624 -25.21031 -22.74636 -22.19894 -20.34302 -19.14188 -17.60435 -17.23248 -17.12844 -16.16668 -15.79769 -15.28318 -15.06678 -14.43139 -14.02381 -13.97045 -13.78043 -13.60219 -13.32248 -13.05097 -12.86747 -12.65259 -12.39881 -12.26065 -12.00564 -11.72143 -11.59956 -11.18029 -10.78989 -10.50410 -9.26945 -9.01791 -8.46053 -6.31460 0.07539 1.22392 1.25165 1.32771 1.50337 1.68911 1.73694 2.14529 2.62064 3.46796 3.53807 3.81595 4.04455 4.09579 4.23502 4.36825 4.41526 4.66286 4.73119 4.80226 4.81393 4.91663 5.04698 5.09833 5.16351 5.20110 5.25716 5.42317 5.77760 5.89604 6.13699 6.15060 6.32387 6.46602 6.62612 6.71046 7.09934 8.05353 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.030818 B = 0.008926 C = 0.007523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.350787 B = 3135.980515 C = 3721.200295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.112 3.888 3 N -0.340 5.340 4 N -0.342 5.342 5 C 0.045 3.955 6 C -0.189 4.189 7 C -0.192 4.192 8 C -0.083 4.083 9 C -0.311 4.311 10 C 0.100 3.900 11 C -0.445 4.445 12 H 0.051 0.949 13 C 0.047 3.953 14 N -0.832 5.832 15 Si 0.979 3.021 16 H -0.251 1.251 17 H -0.275 1.275 18 H -0.260 1.260 19 C 0.059 3.941 20 C -0.072 4.072 21 H 0.111 0.889 22 H 0.065 0.935 23 H 0.033 0.967 24 H 0.090 0.910 25 H 0.133 0.867 26 H 0.130 0.870 27 H 0.122 0.878 28 H 0.098 0.902 29 H 0.300 0.700 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.961 -7.626 13.929 16.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.008 4.008 3 N -0.120 5.120 4 N -0.168 5.168 5 C -0.111 4.111 6 C -0.199 4.199 7 C -0.213 4.213 8 C -0.102 4.102 9 C -0.334 4.334 10 C 0.094 3.906 11 C -0.474 4.474 12 H 0.069 0.931 13 C -0.170 4.170 14 N -0.457 5.457 15 Si 0.801 3.199 16 H -0.176 1.176 17 H -0.201 1.201 18 H -0.184 1.184 19 C -0.074 4.074 20 C -0.130 4.130 21 H 0.129 0.871 22 H 0.084 0.916 23 H 0.053 0.947 24 H 0.108 0.892 25 H 0.150 0.850 26 H 0.148 0.852 27 H 0.140 0.860 28 H 0.116 0.884 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.248 -8.487 12.608 16.079 hybrid contribution 0.140 1.081 -0.218 1.111 sum -5.108 -7.406 12.390 15.312 Atomic orbital electron populations 1.22132 0.93122 1.04559 1.02012 1.22144 0.96293 0.76363 1.05960 1.48891 1.47760 1.12759 1.02598 1.77082 1.27167 1.05541 1.07034 1.22602 1.00387 0.93370 0.94702 1.19665 1.11783 0.96485 0.91960 1.19970 1.11018 0.91974 0.98331 1.20412 0.98878 0.97875 0.93037 1.20399 1.19359 0.99007 0.94614 1.17890 0.91735 0.88974 0.91966 1.19259 1.41199 0.95604 0.91307 0.93123 1.26983 0.92903 1.01610 0.95482 1.69702 1.34603 1.29082 1.12313 0.85241 0.79582 0.76798 0.78252 1.17615 1.20130 1.18358 1.21733 1.02242 0.91279 0.92157 1.20499 1.04340 1.02839 0.85333 0.87065 0.91561 0.94737 0.89198 0.84957 0.85194 0.85987 0.88440 0.88948 0.88922 0.88594 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.28 10.24 71.98 0.74 -2.55 16 2 C 0.11 2.68 6.87 86.38 0.59 3.27 16 3 N -0.34 -12.72 3.56 -332.62 -1.18 -13.90 16 4 N -0.34 -17.39 12.50 -45.03 -0.56 -17.95 16 5 C 0.05 2.45 7.46 43.91 0.33 2.77 16 6 C -0.19 -8.54 6.26 -20.25 -0.13 -8.67 16 7 C -0.19 -8.05 10.09 22.75 0.23 -7.82 16 8 C -0.08 -3.70 9.87 22.08 0.22 -3.48 16 9 C -0.31 -16.17 7.14 22.77 0.16 -16.01 16 10 C 0.10 5.73 5.26 -19.91 -0.10 5.63 16 11 C -0.44 -27.31 9.59 23.18 0.22 -27.08 16 12 H 0.05 3.40 8.06 -2.91 -0.02 3.38 16 13 C 0.05 2.65 5.40 85.27 0.46 3.11 16 14 N -0.83 -47.20 13.93 21.84 0.30 -46.90 16 15 Si 0.98 45.75 24.53 68.60 1.68 47.44 16 16 H -0.25 -10.94 6.72 99.48 0.67 -10.27 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 18 H -0.26 -12.77 6.87 99.48 0.68 -12.09 16 19 C 0.06 2.08 7.00 42.26 0.30 2.38 16 20 C -0.07 -1.48 10.10 71.24 0.72 -0.76 16 21 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 25 H 0.13 1.99 6.92 -2.39 -0.02 1.97 16 26 H 0.13 4.32 8.06 -2.91 -0.02 4.29 16 27 H 0.12 4.52 8.06 -2.91 -0.02 4.49 16 28 H 0.10 4.98 4.72 -2.91 -0.01 4.96 16 29 H 0.30 15.03 8.30 -92.70 -0.77 14.26 16 30 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.10 1.35 6.97 -2.38 -0.02 1.33 16 32 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -75.21 270.42 5.03 -70.18 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 1.06 Total: 10.33 kcal Atomic # 6 Polarization: -52.93 SS G_CDS: 3.73 Total: -49.20 kcal Atomic # 7 Polarization: -77.30 SS G_CDS: -1.44 Total: -78.75 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.68 Total: 47.44 kcal Total: -75.21 5.03 -70.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261182698.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.120 kcal (2) G-P(sol) polarization free energy of solvation -75.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds