Wall clock time and date at job start Mon Mar 30 2020 02:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47479 * 2 1 4 4 N 1.46502 * 109.46949 * 120.00271 * 2 1 3 5 5 C 1.34229 * 125.05981 * 274.99655 * 4 2 1 6 6 C 1.38528 * 107.73046 * 179.97438 * 5 4 2 7 7 C 1.40861 * 134.76008 * 179.97438 * 6 5 4 8 8 C 1.37527 * 120.66186 * 179.97438 * 7 6 5 9 9 C 1.38127 * 122.51221 * 0.02562 * 8 7 6 10 10 C 1.40407 * 121.20130 * 359.97438 * 9 8 7 11 11 C 1.40212 * 120.74036 * 180.02562 * 10 9 8 12 12 H 1.08006 * 119.99653 * 204.51981 * 11 10 9 13 13 C 1.40002 * 120.00359 * 24.51956 * 11 10 9 14 14 N 1.30834 * 120.00054 * 17.90251 * 13 11 10 15 15 Si 1.86807 * 120.00239 * 197.90681 * 13 11 10 16 16 H 1.48501 * 109.47117 * 89.99750 * 15 13 11 17 17 H 1.48500 * 109.47007 * 209.99899 * 15 13 11 18 18 H 1.48506 * 109.46695 * 329.99820 * 15 13 11 19 19 C 1.47090 * 106.25387 * 0.02562 * 6 5 4 20 20 N 1.31233 * 107.04472 * 359.71727 * 19 6 5 21 21 H 1.09001 * 109.47028 * 300.00332 * 1 2 3 22 22 H 1.09001 * 109.46980 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46658 * 59.99962 * 1 2 3 24 24 H 1.09001 * 109.47028 * 239.99668 * 2 1 3 25 25 H 1.09001 * 109.47262 * 59.99811 * 3 2 1 26 26 H 1.08997 * 109.47374 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47206 * 299.99702 * 3 2 1 28 28 H 1.07999 * 126.13455 * 0.02562 * 5 4 2 29 29 H 1.08002 * 119.66797 * 0.02562 * 7 6 5 30 30 H 1.07999 * 118.74001 * 180.02562 * 8 7 6 31 31 H 1.08005 * 119.40244 * 179.97438 * 9 8 7 32 32 H 0.97004 * 120.00317 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1851 -0.1223 2.4007 6 6 2.6592 -1.0958 3.2646 7 6 3.0201 -1.1234 4.6259 8 6 3.4689 -2.2852 5.2091 9 6 3.5901 -3.4691 4.5081 10 6 3.2558 -3.5457 3.1465 11 6 3.3820 -4.7527 2.4444 12 1 3.5140 -4.7426 1.3724 13 6 3.3370 -5.9710 3.1326 14 7 2.8383 -6.0216 4.3411 15 14 3.9890 -7.5245 2.3255 16 1 5.4306 -7.6812 2.6459 17 1 3.2380 -8.6998 2.8353 18 1 3.8167 -7.4273 0.8537 19 6 2.7710 -2.3301 2.4724 20 7 2.3749 -2.0429 1.2547 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3632 0.5139 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.6768 1.9563 0.8900 26 1 3.1301 1.4424 -0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.9847 0.9089 2.6515 29 1 2.9428 -0.2233 5.2178 30 1 3.7368 -2.2712 6.2553 31 1 3.9485 -4.3521 5.0164 32 1 2.8075 -6.8657 4.8182 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261189768.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:40 Heat of formation + Delta-G solvation = 61.825294 kcal Electronic energy + Delta-G solvation = -15416.367081 eV Core-core repulsion = 12956.217256 eV Total energy + Delta-G solvation = -2460.149825 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.72459 -38.05873 -36.09505 -35.01500 -32.33012 -30.17596 -29.90174 -28.17608 -26.89063 -24.82440 -22.39076 -21.63692 -20.71655 -19.12838 -17.71672 -17.32657 -16.83699 -16.03085 -15.78585 -15.16305 -14.84887 -14.55432 -14.01463 -13.87754 -13.39136 -13.22153 -13.11767 -12.91720 -12.75292 -12.47734 -12.32367 -12.06950 -11.90370 -11.74028 -11.64191 -11.13401 -10.79207 -10.55504 -9.11826 -8.77977 -8.37213 -6.12747 0.22950 1.33092 1.37042 1.50080 1.51963 1.73669 1.88614 2.18182 2.74971 3.54350 3.70145 3.93101 3.96388 4.10851 4.12618 4.51369 4.65292 4.71179 4.79828 4.82604 4.88859 4.93445 5.07304 5.10757 5.19560 5.25252 5.50981 5.60806 5.93354 6.06103 6.23349 6.35188 6.47932 6.71457 6.77555 6.93279 7.22788 8.23854 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.030245 B = 0.007754 C = 0.006506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.542845 B = 3610.262664 C = 4302.961451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.137 3.863 3 C -0.152 4.152 4 N -0.334 5.334 5 C 0.025 3.975 6 C -0.183 4.183 7 C -0.228 4.228 8 C -0.081 4.081 9 C -0.268 4.268 10 C 0.107 3.893 11 C -0.458 4.458 12 H 0.069 0.931 13 C 0.031 3.969 14 N -0.800 5.800 15 Si 0.989 3.011 16 H -0.256 1.256 17 H -0.259 1.259 18 H -0.262 1.262 19 C 0.037 3.963 20 N -0.340 5.340 21 H 0.066 0.934 22 H 0.036 0.964 23 H 0.111 0.889 24 H 0.094 0.906 25 H 0.078 0.922 26 H 0.055 0.945 27 H 0.112 0.888 28 H 0.212 0.788 29 H 0.118 0.882 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.634 10.179 -6.185 12.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.037 3.963 3 C -0.210 4.210 4 N -0.115 5.115 5 C -0.126 4.126 6 C -0.193 4.193 7 C -0.249 4.249 8 C -0.100 4.100 9 C -0.292 4.292 10 C 0.102 3.898 11 C -0.486 4.486 12 H 0.087 0.913 13 C -0.186 4.186 14 N -0.424 5.424 15 Si 0.808 3.192 16 H -0.180 1.180 17 H -0.183 1.183 18 H -0.186 1.186 19 C -0.118 4.118 20 N -0.167 5.167 21 H 0.085 0.915 22 H 0.055 0.945 23 H 0.129 0.871 24 H 0.112 0.888 25 H 0.097 0.903 26 H 0.075 0.925 27 H 0.130 0.870 28 H 0.228 0.772 29 H 0.136 0.864 30 H 0.124 0.876 31 H 0.120 0.880 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.969 9.634 -7.327 12.462 hybrid contribution 0.311 -0.674 0.779 1.076 sum -2.658 8.960 -6.548 11.411 Atomic orbital electron populations 1.22200 0.92428 1.02095 1.04643 1.21727 0.95918 0.94161 0.84530 1.22168 1.01678 0.91686 1.05486 1.48986 1.47071 1.06022 1.09377 1.22668 1.04977 0.99648 0.85317 1.19892 1.10158 0.92689 0.96539 1.19808 1.14599 0.98033 0.92493 1.20481 0.98534 0.92801 0.98225 1.20547 1.15809 0.97902 0.94920 1.18004 0.90730 0.88492 0.92546 1.19627 1.42105 0.91430 0.95461 0.91262 1.26874 0.92450 1.04028 0.95272 1.69906 1.29772 1.30041 1.12724 0.85118 0.79495 0.75359 0.79232 1.18044 1.18341 1.18603 1.22790 1.00857 0.96748 0.91413 1.76973 1.25931 0.93727 1.20020 0.91539 0.94475 0.87059 0.88812 0.90342 0.92541 0.86964 0.77150 0.86428 0.87587 0.87988 0.89523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 9.52 71.98 0.69 -2.72 16 2 C 0.14 3.56 3.88 44.99 0.17 3.74 16 3 C -0.15 -2.61 8.81 71.98 0.63 -1.97 16 4 N -0.33 -12.97 3.48 -325.36 -1.13 -14.10 16 5 C 0.02 0.95 10.64 84.40 0.90 1.84 16 6 C -0.18 -8.91 6.33 -20.24 -0.13 -9.04 16 7 C -0.23 -10.79 10.09 22.74 0.23 -10.56 16 8 C -0.08 -4.10 9.87 22.08 0.22 -3.88 16 9 C -0.27 -15.41 8.67 22.77 0.20 -15.22 16 10 C 0.11 6.44 5.73 -19.91 -0.11 6.32 16 11 C -0.46 -26.80 9.07 23.18 0.21 -26.59 16 12 H 0.07 4.06 7.91 -2.91 -0.02 4.04 16 13 C 0.03 1.64 5.13 85.27 0.44 2.08 16 14 N -0.80 -43.36 10.97 21.84 0.24 -43.12 16 15 Si 0.99 39.69 29.60 68.60 2.03 41.73 16 16 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 17 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 18 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 19 C 0.04 2.09 7.46 43.92 0.33 2.42 16 20 N -0.34 -17.46 12.50 -45.03 -0.56 -18.02 16 21 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 22 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.11 1.54 8.14 -2.39 -0.02 1.53 16 24 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 25 H 0.08 1.17 7.06 -2.39 -0.02 1.15 16 26 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.11 1.16 8.14 -2.39 -0.02 1.15 16 28 H 0.21 5.61 7.15 -2.91 -0.02 5.59 16 29 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16 30 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 31 H 0.10 6.00 6.13 -2.91 -0.02 5.99 16 32 H 0.29 14.10 8.30 -92.71 -0.77 13.33 16 Total: -1.00 -72.35 274.55 5.45 -66.90 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 1.11 Total: 20.21 kcal Atomic # 6 Polarization: -57.35 SS G_CDS: 3.77 Total: -53.58 kcal Atomic # 7 Polarization: -73.80 SS G_CDS: -1.45 Total: -75.25 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.73 kcal Total: -72.35 5.45 -66.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261189768.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.726 kcal (2) G-P(sol) polarization free energy of solvation -72.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds