Wall clock time and date at job start Mon Mar 30 2020 03:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47129 * 2 1 4 4 N 1.39990 * 125.11169 * 90.02845 * 3 2 1 5 5 C 1.32226 * 108.81546 * 179.97438 * 4 3 2 6 6 C 1.40982 * 134.53647 * 179.97438 * 5 4 3 7 7 C 1.37489 * 120.72125 * 179.97438 * 6 5 4 8 8 C 1.38131 * 122.60089 * 0.02918 * 7 6 5 9 9 C 1.40486 * 121.10437 * 359.97438 * 8 7 6 10 10 C 1.40137 * 120.76381 * 179.97438 * 9 8 7 11 11 H 1.07996 * 120.00018 * 149.32722 * 10 9 8 12 12 C 1.40075 * 120.00213 * 329.33501 * 10 9 8 13 13 N 1.30782 * 119.99871 * 162.85596 * 12 10 9 14 14 Si 1.86795 * 119.99857 * 342.85269 * 12 10 9 15 15 H 1.48504 * 109.47106 * 86.96125 * 14 12 10 16 16 H 1.48497 * 109.47390 * 206.96113 * 14 12 10 17 17 H 1.48503 * 109.47176 * 326.95814 * 14 12 10 18 18 C 1.47071 * 106.70093 * 359.97438 * 5 4 3 19 19 C 1.34595 * 125.11304 * 270.00045 * 3 2 1 20 20 C 1.50693 * 126.02217 * 0.02562 * 19 3 2 21 21 H 1.08995 * 109.46933 * 60.00064 * 1 2 3 22 22 H 1.08997 * 109.46859 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46798 * 299.99767 * 1 2 3 24 24 H 1.09004 * 109.46798 * 240.00232 * 2 1 3 25 25 H 1.09000 * 109.47457 * 120.00684 * 2 1 3 26 26 H 1.08001 * 119.63858 * 0.02562 * 6 5 4 27 27 H 1.08002 * 118.69902 * 179.97438 * 7 6 5 28 28 H 1.07994 * 119.44364 * 180.02562 * 8 7 6 29 29 H 0.97002 * 120.00028 * 180.02562 * 13 12 10 30 30 H 1.09003 * 109.47043 * 265.11431 * 20 19 3 31 31 H 1.09006 * 109.46949 * 25.10630 * 20 19 3 32 32 H 1.08996 * 109.47272 * 145.10670 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2873 2.1402 1.1452 5 6 2.7107 3.3366 0.7741 6 6 3.1212 4.4972 1.4612 7 6 3.5185 5.6182 0.7715 8 6 3.5388 5.6747 -0.6085 9 6 3.1485 4.5714 -1.3859 10 6 3.1713 4.6368 -2.7855 11 1 3.3621 3.7454 -3.3647 12 6 2.9468 5.8582 -3.4334 13 7 3.2899 6.0063 -4.6867 14 14 2.1573 7.2754 -2.5074 15 1 3.2081 8.0526 -1.8024 16 1 1.4476 8.1593 -3.4666 17 1 1.1885 6.7409 -1.5169 18 6 2.7144 3.3463 -0.6965 19 6 2.2764 2.1111 -1.1010 20 6 2.1135 1.6519 -2.5270 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 3.1244 4.5055 2.5412 27 1 3.8262 6.4894 1.3308 28 1 3.8608 6.5819 -1.0981 29 1 3.1348 6.8523 -5.1353 30 1 3.0671 1.2776 -2.8994 31 1 1.3693 0.8565 -2.5698 32 1 1.7861 2.4893 -3.1432 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261194047.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:55 Heat of formation + Delta-G solvation = 74.860462 kcal Electronic energy + Delta-G solvation = -15744.890202 eV Core-core repulsion = 13285.305624 eV Total energy + Delta-G solvation = -2459.584578 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.09022 -36.20953 -34.07467 -32.93042 -31.87970 -29.61770 -28.50884 -26.14391 -25.12172 -23.40984 -20.87605 -20.74044 -18.58680 -17.18145 -15.93235 -15.80062 -15.33279 -14.54989 -14.09090 -13.78046 -13.43399 -12.83936 -12.53874 -12.41421 -12.17949 -12.13119 -11.79294 -11.52625 -11.26705 -11.16256 -11.00287 -10.71307 -10.19909 -9.89822 -9.74958 -9.34853 -8.93850 -8.62433 -7.44713 -7.21323 -6.59290 -4.55814 1.84553 3.03034 3.08833 3.21239 3.24206 3.32113 3.52041 3.92926 4.51540 4.87122 5.19038 5.26393 5.37530 5.39548 5.57091 5.65178 5.69004 5.97857 6.05512 6.17179 6.32828 6.37750 6.45611 6.68147 6.78751 6.90395 7.03628 7.30462 7.59153 7.81273 7.90675 7.99686 8.12991 8.21667 8.51812 8.60932 8.93365 9.75784 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.028461 B = 0.009941 C = 0.008080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.581852 B = 2815.804179 C = 3464.426133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.132 3.868 3 N -0.367 5.367 4 N -0.364 5.364 5 C 0.155 3.845 6 C -0.284 4.284 7 C 0.008 3.992 8 C -0.356 4.356 9 C 0.161 3.839 10 C -0.406 4.406 11 H 0.100 0.900 12 C 0.082 3.918 13 N -0.784 5.784 14 Si 0.930 3.070 15 H -0.262 1.262 16 H -0.295 1.295 17 H -0.245 1.245 18 C -0.219 4.219 19 C 0.105 3.895 20 C -0.089 4.089 21 H 0.060 0.940 22 H 0.069 0.931 23 H 0.063 0.937 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.292 0.708 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.858 -6.091 1.186 7.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.010 3.990 3 N -0.146 5.146 4 N -0.190 5.190 5 C 0.001 3.999 6 C -0.308 4.308 7 C -0.015 4.015 8 C -0.377 4.377 9 C 0.155 3.845 10 C -0.434 4.434 11 H 0.118 0.882 12 C -0.141 4.141 13 N -0.405 5.405 14 Si 0.756 3.244 15 H -0.188 1.188 16 H -0.223 1.223 17 H -0.168 1.168 18 C -0.229 4.229 19 C -0.025 4.025 20 C -0.147 4.147 21 H 0.079 0.921 22 H 0.088 0.912 23 H 0.083 0.917 24 H 0.102 0.898 25 H 0.106 0.894 26 H 0.111 0.889 27 H 0.109 0.891 28 H 0.119 0.881 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.166 -6.971 1.928 8.347 hybrid contribution -0.073 1.100 -0.388 1.169 sum -4.239 -5.871 1.539 7.404 Atomic orbital electron populations 1.22190 0.95065 1.02180 1.03251 1.21432 0.94725 0.79461 1.03429 1.48307 1.51475 1.11241 1.03566 1.77541 1.32425 1.05154 1.03910 1.20737 0.94436 0.92120 0.92559 1.19039 1.22378 0.92719 0.96652 1.20150 0.92326 0.94935 0.94048 1.20397 1.23311 1.00845 0.93171 1.17947 0.85904 0.88477 0.92151 1.19591 1.36457 0.96386 0.90918 0.88225 1.26416 0.92613 1.00124 0.94927 1.69652 1.31680 1.27402 1.11779 0.86027 0.80539 0.78973 0.78834 1.18804 1.22343 1.16831 1.20487 1.13833 0.95197 0.93415 1.20729 1.00055 0.91975 0.89788 1.20538 1.01847 1.02204 0.90132 0.92107 0.91216 0.91740 0.89751 0.89392 0.88889 0.89112 0.88068 0.89719 0.90725 0.92465 0.88444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 10.24 37.16 0.38 -1.71 16 2 C 0.13 1.87 6.65 -4.04 -0.03 1.85 16 3 N -0.37 -7.42 3.57 -56.76 -0.20 -7.62 16 4 N -0.36 -8.66 12.56 33.23 0.42 -8.24 16 5 C 0.15 3.91 7.48 -83.08 -0.62 3.29 16 6 C -0.28 -6.89 10.09 -38.82 -0.39 -7.28 16 7 C 0.01 0.18 9.86 -39.89 -0.39 -0.21 16 8 C -0.36 -8.91 7.29 -38.77 -0.28 -9.20 16 9 C 0.16 4.12 5.24 -104.73 -0.55 3.57 16 10 C -0.41 -10.26 8.57 -38.18 -0.33 -10.59 16 11 H 0.10 2.51 6.51 -52.49 -0.34 2.17 16 12 C 0.08 2.02 5.41 -17.31 -0.09 1.93 16 13 N -0.78 -19.15 13.93 55.55 0.77 -18.37 16 14 Si 0.93 20.54 24.66 -169.99 -4.19 16.35 16 15 H -0.26 -5.70 6.32 56.52 0.36 -5.34 16 16 H -0.30 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.25 -5.72 7.11 56.52 0.40 -5.32 16 18 C -0.22 -5.46 6.31 -103.10 -0.65 -6.11 16 19 C 0.11 2.23 6.96 -81.78 -0.57 1.66 16 20 C -0.09 -1.50 8.91 36.00 0.32 -1.18 16 21 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 22 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.08 0.98 7.43 -51.93 -0.39 0.60 16 25 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 27 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 28 H 0.10 2.48 4.52 -52.49 -0.24 2.24 16 29 H 0.29 6.45 8.30 -40.82 -0.34 6.11 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.06 0.77 7.40 -51.93 -0.38 0.39 16 32 H 0.10 1.78 6.61 -51.93 -0.34 1.43 16 LS Contribution 265.88 15.07 4.01 4.01 Total: -1.00 -29.50 265.88 -6.23 -35.73 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -3.83 Total: 2.12 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: -3.21 Total: -23.98 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.99 Total: -34.23 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.19 Total: 16.35 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.50 -6.23 -35.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261194047.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.595 kcal (2) G-P(sol) polarization free energy of solvation -29.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds