Wall clock time and date at job start Mon Mar 30 2020 03:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47129 * 2 1 4 4 N 1.39990 * 125.11169 * 90.02845 * 3 2 1 5 5 C 1.32226 * 108.81546 * 179.97438 * 4 3 2 6 6 C 1.40982 * 134.53647 * 179.97438 * 5 4 3 7 7 C 1.37489 * 120.72125 * 179.97438 * 6 5 4 8 8 C 1.38131 * 122.60089 * 0.02918 * 7 6 5 9 9 C 1.40486 * 121.10437 * 359.97438 * 8 7 6 10 10 C 1.40137 * 120.76381 * 179.97438 * 9 8 7 11 11 H 1.07996 * 120.00018 * 149.32722 * 10 9 8 12 12 C 1.40075 * 120.00213 * 329.33501 * 10 9 8 13 13 N 1.30782 * 119.99871 * 162.85596 * 12 10 9 14 14 Si 1.86795 * 119.99857 * 342.85269 * 12 10 9 15 15 H 1.48504 * 109.47106 * 86.96125 * 14 12 10 16 16 H 1.48497 * 109.47390 * 206.96113 * 14 12 10 17 17 H 1.48503 * 109.47176 * 326.95814 * 14 12 10 18 18 C 1.47071 * 106.70093 * 359.97438 * 5 4 3 19 19 C 1.34595 * 125.11304 * 270.00045 * 3 2 1 20 20 C 1.50693 * 126.02217 * 0.02562 * 19 3 2 21 21 H 1.08995 * 109.46933 * 60.00064 * 1 2 3 22 22 H 1.08997 * 109.46859 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46798 * 299.99767 * 1 2 3 24 24 H 1.09004 * 109.46798 * 240.00232 * 2 1 3 25 25 H 1.09000 * 109.47457 * 120.00684 * 2 1 3 26 26 H 1.08001 * 119.63858 * 0.02562 * 6 5 4 27 27 H 1.08002 * 118.69902 * 179.97438 * 7 6 5 28 28 H 1.07994 * 119.44364 * 180.02562 * 8 7 6 29 29 H 0.97002 * 120.00028 * 180.02562 * 13 12 10 30 30 H 1.09003 * 109.47043 * 265.11431 * 20 19 3 31 31 H 1.09006 * 109.46949 * 25.10630 * 20 19 3 32 32 H 1.08996 * 109.47272 * 145.10670 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2873 2.1402 1.1452 5 6 2.7107 3.3366 0.7741 6 6 3.1212 4.4972 1.4612 7 6 3.5185 5.6182 0.7715 8 6 3.5388 5.6747 -0.6085 9 6 3.1485 4.5714 -1.3859 10 6 3.1713 4.6368 -2.7855 11 1 3.3621 3.7454 -3.3647 12 6 2.9468 5.8582 -3.4334 13 7 3.2899 6.0063 -4.6867 14 14 2.1573 7.2754 -2.5074 15 1 3.2081 8.0526 -1.8024 16 1 1.4476 8.1593 -3.4666 17 1 1.1885 6.7409 -1.5169 18 6 2.7144 3.3463 -0.6965 19 6 2.2764 2.1111 -1.1010 20 6 2.1135 1.6519 -2.5270 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 3.1244 4.5055 2.5412 27 1 3.8262 6.4894 1.3308 28 1 3.8608 6.5819 -1.0981 29 1 3.1348 6.8523 -5.1353 30 1 3.0671 1.2776 -2.8994 31 1 1.3693 0.8565 -2.5698 32 1 1.7861 2.4893 -3.1432 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261194047.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:54 Heat of formation + Delta-G solvation = 57.104666 kcal Electronic energy + Delta-G solvation = -15745.660151 eV Core-core repulsion = 13285.305624 eV Total energy + Delta-G solvation = -2460.354527 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.78161 -37.95754 -35.81291 -34.43182 -33.51144 -31.35312 -30.02432 -27.80395 -26.86960 -24.85373 -22.65258 -22.33488 -20.30690 -18.97559 -17.65267 -17.32199 -17.11596 -16.10091 -15.75786 -15.26451 -14.98108 -14.43422 -14.05864 -13.96435 -13.79380 -13.50441 -13.20919 -13.12936 -12.89530 -12.70513 -12.50049 -12.20414 -11.94539 -11.65555 -11.56486 -11.11779 -10.73834 -10.41186 -9.20932 -9.05687 -8.41086 -6.46050 0.08865 1.27273 1.29489 1.38260 1.52907 1.71611 1.78672 2.16200 2.64467 3.49620 3.58697 3.81407 4.12158 4.14267 4.26102 4.36361 4.51561 4.62614 4.72825 4.74381 4.81947 4.92172 4.99549 5.10111 5.15535 5.22618 5.24583 5.52444 5.72694 5.94454 6.11162 6.22716 6.36906 6.39722 6.65539 6.74834 7.13456 7.96091 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.028461 B = 0.009941 C = 0.008080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.581852 B = 2815.804179 C = 3464.426133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.115 3.885 3 N -0.355 5.355 4 N -0.384 5.384 5 C 0.123 3.877 6 C -0.294 4.294 7 C 0.001 3.999 8 C -0.375 4.375 9 C 0.149 3.851 10 C -0.427 4.427 11 H 0.091 0.909 12 C 0.061 3.939 13 N -0.805 5.805 14 Si 0.969 3.031 15 H -0.258 1.258 16 H -0.274 1.274 17 H -0.269 1.269 18 C -0.268 4.268 19 C 0.117 3.883 20 C -0.084 4.084 21 H 0.057 0.943 22 H 0.111 0.889 23 H 0.041 0.959 24 H 0.120 0.880 25 H 0.098 0.902 26 H 0.105 0.895 27 H 0.121 0.879 28 H 0.102 0.898 29 H 0.303 0.697 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.627 -7.430 0.983 8.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.005 4.005 3 N -0.133 5.133 4 N -0.211 5.211 5 C -0.029 4.029 6 C -0.317 4.317 7 C -0.021 4.021 8 C -0.396 4.396 9 C 0.144 3.856 10 C -0.454 4.454 11 H 0.109 0.891 12 C -0.160 4.160 13 N -0.427 5.427 14 Si 0.794 3.206 15 H -0.183 1.183 16 H -0.201 1.201 17 H -0.193 1.193 18 C -0.278 4.278 19 C -0.016 4.016 20 C -0.142 4.142 21 H 0.076 0.924 22 H 0.129 0.871 23 H 0.060 0.940 24 H 0.138 0.862 25 H 0.116 0.884 26 H 0.123 0.877 27 H 0.139 0.861 28 H 0.120 0.880 29 H 0.114 0.886 30 H 0.107 0.893 31 H 0.117 0.883 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.936 -8.321 1.725 9.828 hybrid contribution 0.128 1.304 -0.255 1.335 sum -4.807 -7.017 1.470 8.632 Atomic orbital electron populations 1.22150 0.93314 1.04478 1.01963 1.22064 0.96144 0.76488 1.05782 1.48811 1.49433 1.12704 1.02372 1.77423 1.32764 1.05045 1.05902 1.21068 0.95550 0.92986 0.93282 1.19362 1.22014 0.92903 0.97426 1.20444 0.91941 0.95895 0.93831 1.20593 1.24018 1.00977 0.94000 1.18166 0.85772 0.89264 0.92441 1.19585 1.38264 0.96670 0.90930 0.89078 1.26815 0.92679 1.01149 0.95387 1.69629 1.32313 1.28530 1.12256 0.85447 0.79588 0.77634 0.77950 1.18323 1.20102 1.19333 1.20829 1.16530 0.96858 0.93557 1.21303 0.97601 0.91006 0.91737 1.20624 1.03846 1.02862 0.86873 0.92419 0.87098 0.93992 0.86170 0.88356 0.87697 0.86077 0.88021 0.88561 0.89286 0.88277 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 10.24 71.98 0.74 -2.69 16 2 C 0.11 2.86 6.65 86.38 0.57 3.44 16 3 N -0.36 -13.72 3.57 -333.49 -1.19 -14.91 16 4 N -0.38 -18.10 12.56 -48.77 -0.61 -18.71 16 5 C 0.12 6.30 7.48 42.08 0.31 6.61 16 6 C -0.29 -14.31 10.09 22.77 0.23 -14.08 16 7 C 0.00 0.04 9.86 22.07 0.22 0.25 16 8 C -0.37 -18.95 7.29 22.79 0.17 -18.79 16 9 C 0.15 7.76 5.24 -19.94 -0.10 7.66 16 10 C -0.43 -21.94 8.57 23.18 0.20 -21.74 16 11 H 0.09 4.68 6.51 -2.91 -0.02 4.66 16 12 C 0.06 3.00 5.41 85.29 0.46 3.46 16 13 N -0.80 -39.19 13.93 21.85 0.30 -38.89 16 14 Si 0.97 42.05 24.66 68.60 1.69 43.74 16 15 H -0.26 -10.90 6.32 99.48 0.63 -10.27 16 16 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 17 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 18 C -0.27 -13.43 6.31 -18.88 -0.12 -13.55 16 19 C 0.12 4.84 6.96 41.88 0.29 5.14 16 20 C -0.08 -2.64 8.91 71.23 0.63 -2.01 16 21 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 22 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.12 2.20 7.43 -2.39 -0.02 2.18 16 25 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.10 4.69 8.06 -2.91 -0.02 4.67 16 27 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 28 H 0.10 5.01 4.52 -2.91 -0.01 4.99 16 29 H 0.30 13.19 8.30 -92.71 -0.77 12.43 16 30 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.10 2.25 7.40 -2.38 -0.02 2.24 16 32 H 0.08 2.91 6.61 -2.39 -0.02 2.89 16 Total: -1.00 -64.76 265.88 4.84 -59.92 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 1.05 Total: 15.14 kcal Atomic # 6 Polarization: -49.90 SS G_CDS: 3.60 Total: -46.30 kcal Atomic # 7 Polarization: -71.00 SS G_CDS: -1.50 Total: -72.50 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 1.69 Total: 43.74 kcal Total: -64.76 4.84 -59.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261194047.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.021 kcal (2) G-P(sol) polarization free energy of solvation -64.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds