Wall clock time and date at job start Mon Mar 30 2020 03:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46500 * 109.46957 * 2 1 4 4 N 1.40052 * 126.00723 * 270.04261 * 3 2 1 5 5 C 1.30583 * 109.59509 * 179.97438 * 4 3 2 6 6 C 1.50695 * 125.65555 * 180.02562 * 5 4 3 7 7 C 1.40546 * 108.69560 * 0.02562 * 5 4 3 8 8 C 1.37175 * 126.00529 * 90.00377 * 3 2 1 9 9 C 1.39272 * 133.72599 * 0.03396 * 8 3 2 10 10 C 1.38200 * 120.98713 * 179.97438 * 9 8 3 11 11 C 1.37813 * 121.54430 * 359.97438 * 10 9 8 12 12 C 1.40697 * 120.14730 * 0.02562 * 11 10 9 13 13 C 1.40574 * 120.69404 * 179.97438 * 12 11 10 14 14 H 1.07993 * 119.99681 * 209.34898 * 13 12 11 15 15 C 1.40102 * 119.99844 * 29.35754 * 13 12 11 16 16 N 1.30765 * 119.99827 * 15.16146 * 15 13 12 17 17 Si 1.86796 * 119.99710 * 195.16551 * 15 13 12 18 18 H 1.48499 * 109.47186 * 59.99953 * 17 15 13 19 19 H 1.48496 * 109.47017 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47027 * 299.99837 * 17 15 13 21 21 H 1.08999 * 109.47518 * 59.99957 * 1 2 3 22 22 H 1.09008 * 109.47071 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47411 * 299.99651 * 1 2 3 24 24 H 1.09004 * 109.47411 * 240.00349 * 2 1 3 25 25 H 1.08999 * 109.47518 * 120.00043 * 2 1 3 26 26 H 1.08997 * 109.47041 * 95.60971 * 6 5 4 27 27 H 1.09002 * 109.47576 * 215.61321 * 6 5 4 28 28 H 1.09003 * 109.47236 * 335.61273 * 6 5 4 29 29 H 1.08004 * 119.50920 * 0.02562 * 9 8 3 30 30 H 1.07997 * 119.22541 * 180.02562 * 10 9 8 31 31 H 1.07996 * 119.92443 * 179.75289 * 11 10 9 32 32 H 0.97006 * 119.99464 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 7 2.2919 2.1578 -1.1329 5 6 2.7091 3.3389 -0.7640 6 6 3.1039 4.4600 -1.6903 7 6 2.7289 3.3912 0.6404 8 6 2.2871 2.1415 1.1097 9 6 2.2050 1.9072 2.4801 10 6 2.5516 2.8866 3.3914 11 6 2.9907 4.1277 2.9839 12 6 3.0951 4.4252 1.6127 13 6 3.5411 5.6875 1.1842 14 1 3.1970 6.0910 0.2434 15 6 4.4321 6.4221 1.9776 16 7 5.0773 5.8346 2.9515 17 14 4.6981 8.2407 1.6443 18 1 3.4093 8.9641 1.7883 19 1 5.6811 8.7834 2.6160 20 1 5.2151 8.4204 0.2638 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 2.2553 5.1289 -1.8335 27 1 3.9349 5.0152 -1.2553 28 1 3.4071 4.0467 -2.6524 29 1 1.8661 0.9454 2.8360 30 1 2.4775 2.6740 4.4477 31 1 3.2510 4.8751 3.7187 32 1 5.6945 6.3431 3.5006 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261194354.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:54 Heat of formation + Delta-G solvation = 67.347895 kcal Electronic energy + Delta-G solvation = -15670.532292 eV Core-core repulsion = 13210.621945 eV Total energy + Delta-G solvation = -2459.910347 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.94133 -35.86348 -34.06828 -33.52282 -30.70063 -29.06475 -28.20136 -26.65747 -25.08521 -22.50992 -21.24389 -20.32792 -18.69260 -17.06809 -15.78461 -15.46625 -14.93605 -14.26129 -13.90027 -13.54860 -13.26456 -12.82643 -12.62768 -12.24578 -11.82130 -11.72101 -11.51979 -11.45268 -11.23880 -10.98361 -10.89104 -10.62517 -10.11235 -9.97779 -9.58957 -9.34130 -9.30362 -8.39075 -7.24062 -6.92437 -6.68019 -4.44555 2.32478 2.92417 2.99152 3.01835 3.26769 3.45779 3.76954 3.80263 4.53011 5.13342 5.43936 5.55066 5.60649 5.73617 5.83648 5.97951 6.07947 6.13950 6.36692 6.38344 6.54154 6.60364 6.68158 6.88261 6.90385 7.00332 7.21816 7.48875 7.76311 7.88869 7.96087 8.12918 8.36214 8.54499 8.68600 8.79462 9.00367 9.98616 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.035186 B = 0.008545 C = 0.007154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.590670 B = 3275.930102 C = 3913.153873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.151 3.849 3 N -0.425 5.425 4 N -0.328 5.328 5 C 0.116 3.884 6 C -0.070 4.070 7 C -0.257 4.257 8 C 0.167 3.833 9 C -0.295 4.295 10 C -0.034 4.034 11 C -0.230 4.230 12 C 0.181 3.819 13 C -0.437 4.437 14 H 0.089 0.911 15 C 0.075 3.925 16 N -0.770 5.770 17 Si 0.912 3.088 18 H -0.261 1.261 19 H -0.276 1.276 20 H -0.261 1.261 21 H 0.058 0.942 22 H 0.063 0.937 23 H 0.059 0.941 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.056 0.944 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.114 0.886 32 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.841 -2.260 -2.256 4.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.028 3.972 3 N -0.213 5.213 4 N -0.145 5.145 5 C -0.055 4.055 6 C -0.129 4.129 7 C -0.265 4.265 8 C 0.053 3.947 9 C -0.320 4.320 10 C -0.055 4.055 11 C -0.251 4.251 12 C 0.176 3.824 13 C -0.465 4.465 14 H 0.107 0.893 15 C -0.147 4.147 16 N -0.393 5.393 17 Si 0.735 3.265 18 H -0.185 1.185 19 H -0.201 1.201 20 H -0.186 1.186 21 H 0.077 0.923 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.086 0.914 27 H 0.106 0.894 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.132 0.868 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.972 -3.161 -3.094 5.329 hybrid contribution 0.328 1.009 0.783 1.319 sum -2.644 -2.152 -2.310 4.118 Atomic orbital electron populations 1.22201 0.96022 1.01561 1.02858 1.21145 0.93958 0.79620 1.02478 1.47996 1.60071 1.11090 1.02158 1.76578 1.24714 1.04366 1.08848 1.21832 0.96985 0.93301 0.93389 1.20239 1.02031 0.94200 0.96394 1.19720 1.19298 0.95454 0.92074 1.18645 0.96327 0.90738 0.88999 1.19022 1.23472 1.00580 0.88899 1.20348 0.95283 0.93425 0.96461 1.20860 1.11714 0.97119 0.95423 1.18044 0.84659 0.89695 0.90018 1.19655 1.21392 1.00263 1.05216 0.89296 1.26065 0.94183 1.00794 0.93621 1.69816 1.17406 1.37982 1.14097 0.86291 0.79260 0.81356 0.79557 1.18494 1.20128 1.18576 0.92257 0.91783 0.92192 0.90410 0.90392 0.91388 0.89432 0.92458 0.89735 0.89112 0.86766 0.90313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 10.24 37.15 0.38 -2.09 16 2 C 0.15 2.55 7.14 -4.05 -0.03 2.53 16 3 N -0.42 -9.51 3.67 -58.73 -0.22 -9.72 16 4 N -0.33 -7.66 12.47 33.77 0.42 -7.24 16 5 C 0.12 2.74 7.21 -82.26 -0.59 2.14 16 6 C -0.07 -1.35 9.30 36.00 0.33 -1.01 16 7 C -0.26 -6.64 6.19 -104.77 -0.65 -7.29 16 8 C 0.17 4.13 6.88 -84.19 -0.58 3.55 16 9 C -0.30 -6.95 9.98 -39.21 -0.39 -7.34 16 10 C -0.03 -0.81 9.94 -39.75 -0.40 -1.21 16 11 C -0.23 -5.93 8.66 -38.81 -0.34 -6.26 16 12 C 0.18 4.78 5.68 -104.73 -0.59 4.19 16 13 C -0.44 -10.88 8.06 -38.00 -0.31 -11.19 16 14 H 0.09 2.07 6.15 -52.49 -0.32 1.75 16 15 C 0.07 1.76 5.17 -17.31 -0.09 1.67 16 16 N -0.77 -18.86 11.15 55.56 0.62 -18.24 16 17 Si 0.91 17.35 29.59 -169.99 -5.03 12.32 16 18 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 19 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 20 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 21 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 22 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 25 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 26 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.09 1.71 6.55 -51.93 -0.34 1.37 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.08 1.78 8.06 -52.48 -0.42 1.35 16 30 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 31 H 0.11 2.96 6.46 -52.49 -0.34 2.62 16 32 H 0.29 6.33 8.29 -40.82 -0.34 5.99 16 LS Contribution 273.23 15.07 4.12 4.12 Total: -1.00 -28.81 273.23 -7.28 -36.08 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -3.94 Total: 5.00 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -3.25 Total: -22.32 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.83 Total: -35.21 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.32 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.81 -7.28 -36.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261194354.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.432 kcal (2) G-P(sol) polarization free energy of solvation -28.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds