Wall clock time and date at job start Mon Mar 30 2020 03:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46500 * 109.46957 * 2 1 4 4 N 1.40052 * 126.00723 * 270.04261 * 3 2 1 5 5 C 1.30583 * 109.59509 * 179.97438 * 4 3 2 6 6 C 1.50695 * 125.65555 * 180.02562 * 5 4 3 7 7 C 1.40546 * 108.69560 * 0.02562 * 5 4 3 8 8 C 1.37175 * 126.00529 * 90.00377 * 3 2 1 9 9 C 1.39272 * 133.72599 * 0.03396 * 8 3 2 10 10 C 1.38200 * 120.98713 * 179.97438 * 9 8 3 11 11 C 1.37813 * 121.54430 * 359.97438 * 10 9 8 12 12 C 1.40697 * 120.14730 * 0.02562 * 11 10 9 13 13 C 1.40574 * 120.69404 * 179.97438 * 12 11 10 14 14 H 1.07993 * 119.99681 * 209.34898 * 13 12 11 15 15 C 1.40102 * 119.99844 * 29.35754 * 13 12 11 16 16 N 1.30765 * 119.99827 * 15.16146 * 15 13 12 17 17 Si 1.86796 * 119.99710 * 195.16551 * 15 13 12 18 18 H 1.48499 * 109.47186 * 59.99953 * 17 15 13 19 19 H 1.48496 * 109.47017 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47027 * 299.99837 * 17 15 13 21 21 H 1.08999 * 109.47518 * 59.99957 * 1 2 3 22 22 H 1.09008 * 109.47071 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47411 * 299.99651 * 1 2 3 24 24 H 1.09004 * 109.47411 * 240.00349 * 2 1 3 25 25 H 1.08999 * 109.47518 * 120.00043 * 2 1 3 26 26 H 1.08997 * 109.47041 * 95.60971 * 6 5 4 27 27 H 1.09002 * 109.47576 * 215.61321 * 6 5 4 28 28 H 1.09003 * 109.47236 * 335.61273 * 6 5 4 29 29 H 1.08004 * 119.50920 * 0.02562 * 9 8 3 30 30 H 1.07997 * 119.22541 * 180.02562 * 10 9 8 31 31 H 1.07996 * 119.92443 * 179.75289 * 11 10 9 32 32 H 0.97006 * 119.99464 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 7 2.2919 2.1578 -1.1329 5 6 2.7091 3.3389 -0.7640 6 6 3.1039 4.4600 -1.6903 7 6 2.7289 3.3912 0.6404 8 6 2.2871 2.1415 1.1097 9 6 2.2050 1.9072 2.4801 10 6 2.5516 2.8866 3.3914 11 6 2.9907 4.1277 2.9839 12 6 3.0951 4.4252 1.6127 13 6 3.5411 5.6875 1.1842 14 1 3.1970 6.0910 0.2434 15 6 4.4321 6.4221 1.9776 16 7 5.0773 5.8346 2.9515 17 14 4.6981 8.2407 1.6443 18 1 3.4093 8.9641 1.7883 19 1 5.6811 8.7834 2.6160 20 1 5.2151 8.4204 0.2638 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 2.2553 5.1289 -1.8335 27 1 3.9349 5.0152 -1.2553 28 1 3.4071 4.0467 -2.6524 29 1 1.8661 0.9454 2.8360 30 1 2.4775 2.6740 4.4477 31 1 3.2510 4.8751 3.7187 32 1 5.6945 6.3431 3.5006 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261194354.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:53 Heat of formation + Delta-G solvation = 51.776818 kcal Electronic energy + Delta-G solvation = -15671.207505 eV Core-core repulsion = 13210.621945 eV Total energy + Delta-G solvation = -2460.585560 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.71376 -37.66850 -35.69599 -35.23371 -32.28038 -30.84046 -30.01188 -28.23363 -26.90060 -23.98901 -23.07006 -22.10526 -20.44778 -18.81402 -17.53327 -17.25580 -16.55093 -15.92634 -15.50456 -15.15964 -14.92300 -14.45124 -14.09746 -13.87346 -13.43093 -13.22134 -13.10503 -12.89770 -12.78114 -12.73682 -12.27667 -12.12945 -11.89599 -11.74828 -11.40248 -11.12337 -11.06917 -10.16685 -9.10777 -8.70931 -8.49668 -6.32796 0.50362 1.22515 1.43677 1.55277 1.59250 1.86161 1.95605 2.20832 2.73004 3.67123 3.74109 4.15568 4.20382 4.25996 4.38500 4.39930 4.70517 4.72939 4.80496 4.86606 4.90377 5.05732 5.14428 5.15544 5.20267 5.22531 5.40488 5.64358 5.92397 6.08653 6.12706 6.24914 6.55962 6.73693 6.82400 6.93449 7.18058 8.24330 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.035186 B = 0.008545 C = 0.007154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.590670 B = 3275.930102 C = 3913.153873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.136 3.864 3 N -0.424 5.424 4 N -0.334 5.334 5 C 0.100 3.900 6 C -0.065 4.065 7 C -0.291 4.291 8 C 0.148 3.852 9 C -0.300 4.300 10 C -0.037 4.037 11 C -0.259 4.259 12 C 0.154 3.846 13 C -0.459 4.459 14 H 0.097 0.903 15 C 0.037 3.963 16 N -0.802 5.802 17 Si 0.985 3.015 18 H -0.258 1.258 19 H -0.268 1.268 20 H -0.251 1.251 21 H 0.047 0.953 22 H 0.104 0.896 23 H 0.044 0.956 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.110 0.890 30 H 0.118 0.882 31 H 0.102 0.898 32 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.101 -2.363 -2.912 4.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.016 3.984 3 N -0.213 5.213 4 N -0.152 5.152 5 C -0.070 4.070 6 C -0.123 4.123 7 C -0.300 4.300 8 C 0.032 3.968 9 C -0.324 4.324 10 C -0.058 4.058 11 C -0.280 4.280 12 C 0.148 3.852 13 C -0.486 4.486 14 H 0.115 0.885 15 C -0.182 4.182 16 N -0.425 5.425 17 Si 0.805 3.195 18 H -0.182 1.182 19 H -0.193 1.193 20 H -0.175 1.175 21 H 0.066 0.934 22 H 0.123 0.877 23 H 0.063 0.937 24 H 0.113 0.887 25 H 0.111 0.889 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.128 0.872 30 H 0.136 0.864 31 H 0.120 0.880 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.246 -3.304 -3.760 5.966 hybrid contribution 0.391 0.911 0.986 1.398 sum -2.854 -2.394 -2.774 4.644 Atomic orbital electron populations 1.22116 0.94130 1.03797 1.01479 1.21634 0.95514 0.77201 1.04087 1.48450 1.59287 1.12398 1.01117 1.76503 1.24674 1.04460 1.09570 1.22386 0.97005 0.94325 0.93328 1.20288 1.02330 0.93257 0.96453 1.20147 1.20343 0.96175 0.93342 1.18973 0.96546 0.91194 0.90065 1.19301 1.23051 1.01531 0.88535 1.20647 0.94332 0.92782 0.98055 1.20882 1.13805 0.98014 0.95284 1.18416 0.85430 0.90738 0.90580 1.19966 1.22018 1.00492 1.06163 0.88464 1.26959 0.93186 1.05154 0.92905 1.69869 1.17809 1.39978 1.14861 0.85187 0.79277 0.75156 0.79888 1.18194 1.19275 1.17523 0.93429 0.87701 0.93681 0.88692 0.88896 0.89826 0.90128 0.90233 0.87226 0.86441 0.87971 0.89492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.26 10.24 71.98 0.74 -3.52 16 2 C 0.14 4.33 7.14 86.38 0.62 4.95 16 3 N -0.42 -18.62 3.67 -339.73 -1.25 -19.87 16 4 N -0.33 -15.43 12.47 -47.09 -0.59 -16.02 16 5 C 0.10 4.74 7.21 43.31 0.31 5.05 16 6 C -0.06 -2.45 9.30 71.23 0.66 -1.78 16 7 C -0.29 -15.31 6.19 -19.96 -0.12 -15.44 16 8 C 0.15 7.31 6.88 39.14 0.27 7.58 16 9 C -0.30 -13.98 9.98 22.51 0.22 -13.76 16 10 C -0.04 -1.78 9.94 22.16 0.22 -1.56 16 11 C -0.26 -13.69 8.66 22.77 0.20 -13.49 16 12 C 0.15 8.32 5.68 -19.93 -0.11 8.21 16 13 C -0.46 -23.21 8.06 23.29 0.19 -23.02 16 14 H 0.10 4.57 6.15 -2.91 -0.02 4.55 16 15 C 0.04 1.73 5.17 85.30 0.44 2.17 16 16 N -0.80 -39.84 11.15 21.85 0.24 -39.60 16 17 Si 0.99 35.03 29.59 68.60 2.03 37.06 16 18 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 19 H -0.27 -9.11 7.11 99.48 0.71 -8.40 16 20 H -0.25 -8.49 7.11 99.48 0.71 -7.79 16 21 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 22 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 23 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 25 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 26 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 27 H 0.08 3.13 6.55 -2.39 -0.02 3.12 16 28 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 29 H 0.11 4.42 8.06 -2.91 -0.02 4.40 16 30 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 31 H 0.10 5.51 6.46 -2.91 -0.02 5.49 16 32 H 0.29 13.10 8.29 -92.70 -0.77 12.33 16 Total: -1.00 -62.68 273.23 5.19 -57.49 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: 1.12 Total: 25.55 kcal Atomic # 6 Polarization: -48.25 SS G_CDS: 3.63 Total: -44.62 kcal Atomic # 7 Polarization: -73.89 SS G_CDS: -1.59 Total: -75.49 kcal Atomic # 14 Polarization: 35.03 SS G_CDS: 2.03 Total: 37.06 kcal Total: -62.68 5.19 -57.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261194354.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.268 kcal (2) G-P(sol) polarization free energy of solvation -62.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds