Wall clock time and date at job start Mon Mar 30 2020 02:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47358 * 2 1 4 4 N 1.46504 * 109.47480 * 120.00819 * 2 1 3 5 5 N 1.40020 * 126.00699 * 300.03676 * 4 2 1 6 6 C 1.30386 * 109.79060 * 179.69991 * 5 4 2 7 7 C 1.41155 * 108.81615 * 0.41496 * 6 5 4 8 8 C 1.40751 * 133.20335 * 179.87166 * 7 6 5 9 9 C 1.35578 * 120.18981 * 179.62263 * 8 7 6 10 10 C 1.41321 * 120.45421 * 0.06830 * 9 8 7 11 11 C 1.41079 * 119.98488 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00239 * 154.84696 * 11 10 9 13 13 C 1.39962 * 119.99740 * 334.84565 * 11 10 9 14 14 N 1.30823 * 120.00307 * 342.06008 * 13 11 10 15 15 Si 1.86797 * 120.00089 * 162.06514 * 13 11 10 16 16 H 1.48504 * 109.47634 * 94.63694 * 15 13 11 17 17 H 1.48501 * 109.47345 * 214.64241 * 15 13 11 18 18 H 1.48499 * 109.46956 * 334.63983 * 15 13 11 19 19 C 1.40447 * 120.03382 * 359.96321 * 10 9 8 20 20 C 1.37448 * 126.01377 * 119.99172 * 4 2 1 21 21 H 1.09001 * 109.47208 * 59.99210 * 1 2 3 22 22 H 1.08995 * 109.47632 * 179.97438 * 1 2 3 23 23 H 1.09010 * 109.46512 * 299.99544 * 1 2 3 24 24 H 1.09004 * 109.46812 * 240.00144 * 2 1 3 25 25 H 1.08997 * 109.47304 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.47605 * 300.00546 * 3 2 1 27 27 H 1.09010 * 109.46937 * 60.00717 * 3 2 1 28 28 H 1.07998 * 125.58718 * 180.02562 * 6 5 4 29 29 H 1.07992 * 119.90269 * 359.66665 * 8 7 6 30 30 H 1.07998 * 119.77514 * 180.02562 * 9 8 7 31 31 H 0.97001 * 120.00502 * 180.02562 * 14 13 11 32 32 H 1.08002 * 120.24127 * 179.97438 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6908 1.1961 5 7 1.7583 -0.3243 2.5222 6 6 2.3423 -1.1609 3.3340 7 6 3.0332 -2.1276 2.5721 8 6 3.8211 -3.2422 2.9156 9 6 4.3673 -4.0160 1.9455 10 6 4.1537 -3.7124 0.5819 11 6 4.7272 -4.5240 -0.4194 12 1 4.2757 -4.5729 -1.3992 13 6 5.8815 -5.2657 -0.1430 14 7 6.6255 -4.9580 0.8881 15 14 6.3598 -6.6951 -1.2464 16 1 7.3256 -6.2267 -2.2726 17 1 6.9865 -7.7640 -0.4280 18 1 5.1473 -7.2309 -1.9158 19 6 3.3704 -2.6032 0.2231 20 6 2.8118 -1.8130 1.2138 21 1 -0.3634 0.5140 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.6768 1.9563 0.8901 28 1 2.3085 -1.1173 4.4126 29 1 3.9904 -3.4821 3.9548 30 1 4.9704 -4.8699 2.2166 31 1 7.4257 -5.4718 1.0795 32 1 3.2053 -2.3678 -0.8180 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261196549.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:32 Heat of formation + Delta-G solvation = 67.175275 kcal Electronic energy + Delta-G solvation = -15461.225404 eV Core-core repulsion = 13001.307572 eV Total energy + Delta-G solvation = -2459.917833 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.01356 -36.34411 -34.88777 -33.16568 -30.52550 -29.14322 -27.59630 -26.97977 -25.28183 -22.18018 -21.22683 -20.60232 -18.72513 -17.50969 -15.75766 -15.39025 -15.23305 -14.18259 -14.01000 -13.66808 -13.56644 -12.66621 -12.51733 -12.44430 -11.98735 -11.81810 -11.75954 -11.28927 -11.10164 -10.94984 -10.87413 -10.76877 -10.25150 -10.09800 -9.62972 -9.42799 -9.14923 -8.86241 -7.30680 -6.98756 -6.62529 -4.49179 2.31089 2.91585 2.99786 3.05318 3.20300 3.39782 3.72312 3.82122 4.55815 5.00028 5.31620 5.39759 5.62735 5.64315 5.75919 5.90060 6.00818 6.02260 6.07338 6.28585 6.44685 6.49906 6.65995 6.85553 6.91949 6.97689 7.16696 7.45020 7.74249 7.81680 7.90736 8.13516 8.28304 8.46761 8.71911 8.78673 8.92799 9.99714 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.036330 B = 0.007139 C = 0.006311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.526912 B = 3921.160583 C = 4435.722875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.174 3.826 3 C -0.157 4.157 4 N -0.422 5.422 5 N -0.315 5.315 6 C 0.073 3.927 7 C -0.274 4.274 8 C -0.056 4.056 9 C -0.157 4.157 10 C 0.152 3.848 11 C -0.448 4.448 12 H 0.082 0.918 13 C 0.076 3.924 14 N -0.780 5.780 15 Si 0.911 3.089 16 H -0.269 1.269 17 H -0.273 1.273 18 H -0.258 1.258 19 C -0.292 4.292 20 C 0.173 3.827 21 H 0.063 0.937 22 H 0.056 0.944 23 H 0.064 0.936 24 H 0.091 0.909 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.167 0.833 29 H 0.095 0.905 30 H 0.122 0.878 31 H 0.285 0.715 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.264 3.298 -1.059 5.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.071 3.929 3 C -0.215 4.215 4 N -0.212 5.212 5 N -0.130 5.130 6 C -0.120 4.120 7 C -0.283 4.283 8 C -0.076 4.076 9 C -0.176 4.176 10 C 0.147 3.853 11 C -0.477 4.477 12 H 0.100 0.900 13 C -0.144 4.144 14 N -0.404 5.404 15 Si 0.735 3.265 16 H -0.194 1.194 17 H -0.198 1.198 18 H -0.182 1.182 19 C -0.317 4.317 20 C 0.061 3.939 21 H 0.082 0.918 22 H 0.075 0.925 23 H 0.083 0.917 24 H 0.109 0.891 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.184 0.816 29 H 0.113 0.887 30 H 0.139 0.861 31 H 0.096 0.904 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.849 4.395 -1.131 6.641 hybrid contribution 0.900 -1.307 -0.411 1.639 sum -3.950 3.088 -1.542 5.245 Atomic orbital electron populations 1.22113 0.94902 1.02347 1.02118 1.20818 0.94158 0.92933 0.85029 1.22117 1.01672 0.95654 1.02100 1.48188 1.45646 1.24282 1.03130 1.76379 1.24724 1.24311 0.87545 1.23393 0.96733 0.93339 0.98502 1.18472 1.13587 1.04180 0.92027 1.19966 0.96326 0.93663 0.97682 1.21001 1.02691 1.01372 0.92583 1.17378 0.87294 0.88176 0.92477 1.19634 1.07789 1.21155 0.99110 0.89961 1.26016 0.95548 0.97363 0.95452 1.69833 1.11016 1.34786 1.24811 0.86247 0.79606 0.80365 0.80310 1.19373 1.19803 1.18205 1.19662 1.15962 1.01147 0.94949 1.18715 0.91915 0.87660 0.95630 0.91839 0.92454 0.91733 0.89089 0.92403 0.91843 0.91738 0.81599 0.88693 0.86063 0.90443 0.89072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.45 37.16 0.35 -1.95 16 2 C 0.17 2.99 3.71 -67.93 -0.25 2.73 16 3 C -0.16 -2.35 9.45 37.16 0.35 -2.00 16 4 N -0.42 -9.08 3.35 -52.25 -0.17 -9.26 16 5 N -0.32 -6.76 12.30 30.82 0.38 -6.38 16 6 C 0.07 1.53 12.03 -17.06 -0.21 1.32 16 7 C -0.27 -6.49 6.17 -106.73 -0.66 -7.15 16 8 C -0.06 -1.30 10.03 -39.58 -0.40 -1.70 16 9 C -0.16 -3.96 8.59 -39.36 -0.34 -4.30 16 10 C 0.15 3.99 5.57 -106.82 -0.59 3.39 16 11 C -0.45 -11.42 9.02 -37.86 -0.34 -11.77 16 12 H 0.08 2.01 7.91 -52.49 -0.42 1.60 16 13 C 0.08 1.82 5.12 -17.34 -0.09 1.73 16 14 N -0.78 -19.18 10.98 55.55 0.61 -18.57 16 15 Si 0.91 17.66 29.60 -169.99 -5.03 12.63 16 16 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 17 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 18 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 19 C -0.29 -7.36 9.59 -38.66 -0.37 -7.73 16 20 C 0.17 4.21 6.87 -84.14 -0.58 3.63 16 21 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 24 H 0.09 1.54 7.47 -51.93 -0.39 1.15 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 28 H 0.17 2.79 8.06 -52.49 -0.42 2.37 16 29 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 30 H 0.12 3.08 6.17 -52.49 -0.32 2.76 16 31 H 0.28 6.29 8.30 -40.82 -0.34 5.95 16 32 H 0.09 2.18 7.65 -52.49 -0.40 1.78 16 LS Contribution 275.59 15.07 4.15 4.15 Total: -1.00 -28.21 275.59 -7.23 -35.44 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -4.04 Total: 5.76 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: -3.12 Total: -23.78 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.81 Total: -34.21 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.03 Total: 12.63 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.21 -7.23 -35.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261196549.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.612 kcal (2) G-P(sol) polarization free energy of solvation -28.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds