Wall clock time and date at job start Mon Mar 30 2020 02:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47358 * 2 1 4 4 N 1.46504 * 109.47480 * 120.00819 * 2 1 3 5 5 N 1.40020 * 126.00699 * 300.03676 * 4 2 1 6 6 C 1.30386 * 109.79060 * 179.69991 * 5 4 2 7 7 C 1.41155 * 108.81615 * 0.41496 * 6 5 4 8 8 C 1.40751 * 133.20335 * 179.87166 * 7 6 5 9 9 C 1.35578 * 120.18981 * 179.62263 * 8 7 6 10 10 C 1.41321 * 120.45421 * 0.06830 * 9 8 7 11 11 C 1.41079 * 119.98488 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00239 * 154.84696 * 11 10 9 13 13 C 1.39962 * 119.99740 * 334.84565 * 11 10 9 14 14 N 1.30823 * 120.00307 * 342.06008 * 13 11 10 15 15 Si 1.86797 * 120.00089 * 162.06514 * 13 11 10 16 16 H 1.48504 * 109.47634 * 94.63694 * 15 13 11 17 17 H 1.48501 * 109.47345 * 214.64241 * 15 13 11 18 18 H 1.48499 * 109.46956 * 334.63983 * 15 13 11 19 19 C 1.40447 * 120.03382 * 359.96321 * 10 9 8 20 20 C 1.37448 * 126.01377 * 119.99172 * 4 2 1 21 21 H 1.09001 * 109.47208 * 59.99210 * 1 2 3 22 22 H 1.08995 * 109.47632 * 179.97438 * 1 2 3 23 23 H 1.09010 * 109.46512 * 299.99544 * 1 2 3 24 24 H 1.09004 * 109.46812 * 240.00144 * 2 1 3 25 25 H 1.08997 * 109.47304 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.47605 * 300.00546 * 3 2 1 27 27 H 1.09010 * 109.46937 * 60.00717 * 3 2 1 28 28 H 1.07998 * 125.58718 * 180.02562 * 6 5 4 29 29 H 1.07992 * 119.90269 * 359.66665 * 8 7 6 30 30 H 1.07998 * 119.77514 * 180.02562 * 9 8 7 31 31 H 0.97001 * 120.00502 * 180.02562 * 14 13 11 32 32 H 1.08002 * 120.24127 * 179.97438 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6908 1.1961 5 7 1.7583 -0.3243 2.5222 6 6 2.3423 -1.1609 3.3340 7 6 3.0332 -2.1276 2.5721 8 6 3.8211 -3.2422 2.9156 9 6 4.3673 -4.0160 1.9455 10 6 4.1537 -3.7124 0.5819 11 6 4.7272 -4.5240 -0.4194 12 1 4.2757 -4.5729 -1.3992 13 6 5.8815 -5.2657 -0.1430 14 7 6.6255 -4.9580 0.8881 15 14 6.3598 -6.6951 -1.2464 16 1 7.3256 -6.2267 -2.2726 17 1 6.9865 -7.7640 -0.4280 18 1 5.1473 -7.2309 -1.9158 19 6 3.3704 -2.6032 0.2231 20 6 2.8118 -1.8130 1.2138 21 1 -0.3634 0.5140 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.6768 1.9563 0.8901 28 1 2.3085 -1.1173 4.4126 29 1 3.9904 -3.4821 3.9548 30 1 4.9704 -4.8699 2.2166 31 1 7.4257 -5.4718 1.0795 32 1 3.2053 -2.3678 -0.8180 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261196549.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:32 Heat of formation + Delta-G solvation = 52.365138 kcal Electronic energy + Delta-G solvation = -15461.867620 eV Core-core repulsion = 13001.307572 eV Total energy + Delta-G solvation = -2460.560048 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.74424 -38.12153 -36.36301 -34.97232 -32.25606 -30.96246 -29.33112 -28.17316 -27.13723 -23.68942 -23.05765 -22.41853 -20.34707 -19.24811 -17.45049 -17.18796 -16.96099 -15.76832 -15.45517 -15.28208 -15.21302 -14.34443 -14.19000 -13.92900 -13.54802 -13.13936 -13.11449 -12.89396 -12.77582 -12.53388 -12.38452 -12.16758 -12.00931 -11.82047 -11.36036 -11.23365 -10.94970 -10.59627 -9.18213 -8.78491 -8.41891 -6.41287 0.51751 1.22911 1.40438 1.45838 1.55890 1.82815 1.98999 2.19881 2.73539 3.63053 3.69010 4.06161 4.06615 4.21175 4.30405 4.51328 4.66332 4.67632 4.80677 4.81200 4.89320 5.00846 5.04850 5.13131 5.23154 5.24661 5.36392 5.63383 5.87106 6.01592 6.03193 6.27263 6.52428 6.59722 6.85485 6.93477 7.14189 8.23091 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.036330 B = 0.007139 C = 0.006311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.526912 B = 3921.160583 C = 4435.722875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.156 3.844 3 C -0.147 4.147 4 N -0.423 5.423 5 N -0.315 5.315 6 C 0.077 3.923 7 C -0.295 4.295 8 C -0.049 4.049 9 C -0.181 4.181 10 C 0.126 3.874 11 C -0.482 4.482 12 H 0.080 0.920 13 C 0.040 3.960 14 N -0.809 5.809 15 Si 0.986 3.014 16 H -0.261 1.261 17 H -0.261 1.261 18 H -0.258 1.258 19 C -0.312 4.312 20 C 0.154 3.846 21 H 0.101 0.899 22 H 0.042 0.958 23 H 0.059 0.941 24 H 0.087 0.913 25 H 0.039 0.961 26 H 0.101 0.899 27 H 0.060 0.940 28 H 0.209 0.791 29 H 0.126 0.874 30 H 0.114 0.886 31 H 0.295 0.705 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.733 3.699 -1.077 6.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.054 3.946 3 C -0.205 4.205 4 N -0.213 5.213 5 N -0.129 5.129 6 C -0.116 4.116 7 C -0.303 4.303 8 C -0.070 4.070 9 C -0.201 4.201 10 C 0.121 3.879 11 C -0.510 4.510 12 H 0.098 0.902 13 C -0.178 4.178 14 N -0.433 5.433 15 Si 0.806 3.194 16 H -0.186 1.186 17 H -0.185 1.185 18 H -0.182 1.182 19 C -0.337 4.337 20 C 0.040 3.960 21 H 0.119 0.881 22 H 0.061 0.939 23 H 0.079 0.921 24 H 0.106 0.894 25 H 0.058 0.942 26 H 0.120 0.880 27 H 0.079 0.921 28 H 0.225 0.775 29 H 0.143 0.857 30 H 0.131 0.869 31 H 0.106 0.894 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.336 4.829 -1.155 7.289 hybrid contribution 0.986 -1.309 -0.360 1.678 sum -4.350 3.519 -1.515 5.797 Atomic orbital electron populations 1.22038 0.92678 1.01909 1.03755 1.21285 0.95977 0.93853 0.83459 1.22048 1.00472 0.94216 1.03772 1.48620 1.44868 1.23599 1.04227 1.76349 1.24522 1.24352 0.87683 1.23982 0.95408 0.91880 1.00348 1.18880 1.14084 1.04911 0.92458 1.20266 0.94985 0.92893 0.98844 1.21000 1.04159 1.02149 0.92831 1.17726 0.87989 0.88824 0.93373 1.19881 1.09115 1.22851 0.99204 0.90165 1.26856 0.94724 0.99342 0.96891 1.69860 1.11533 1.35810 1.26109 0.85131 0.79190 0.76751 0.78334 1.18612 1.18538 1.18175 1.19727 1.17008 1.01732 0.95264 1.18925 0.92465 0.88645 0.96000 0.88069 0.93904 0.92142 0.89444 0.94163 0.88035 0.92124 0.77452 0.85657 0.86851 0.89424 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.00 9.45 71.98 0.68 -3.32 16 2 C 0.16 5.19 3.71 44.99 0.17 5.36 16 3 C -0.15 -4.12 9.45 71.98 0.68 -3.44 16 4 N -0.42 -17.98 3.35 -319.21 -1.07 -19.05 16 5 N -0.32 -13.02 12.30 -56.40 -0.69 -13.71 16 6 C 0.08 3.07 12.03 85.62 1.03 4.10 16 7 C -0.29 -13.84 6.17 -21.23 -0.13 -13.97 16 8 C -0.05 -2.30 10.03 22.27 0.22 -2.08 16 9 C -0.18 -9.42 8.59 22.41 0.19 -9.23 16 10 C 0.13 6.85 5.57 -21.29 -0.12 6.73 16 11 C -0.48 -25.42 9.02 23.39 0.21 -25.21 16 12 H 0.08 4.09 7.91 -2.91 -0.02 4.06 16 13 C 0.04 1.91 5.12 85.26 0.44 2.34 16 14 N -0.81 -40.29 10.98 21.83 0.24 -40.05 16 15 Si 0.99 36.12 29.60 68.60 2.03 38.15 16 16 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 17 H -0.26 -8.99 7.11 99.48 0.71 -8.29 16 18 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 19 C -0.31 -16.31 9.59 22.87 0.22 -16.09 16 20 C 0.15 7.56 6.87 39.04 0.27 7.83 16 21 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 22 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 24 H 0.09 2.95 7.47 -2.38 -0.02 2.93 16 25 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 28 H 0.21 6.25 8.06 -2.91 -0.02 6.23 16 29 H 0.13 4.92 8.06 -2.91 -0.02 4.90 16 30 H 0.11 5.95 6.17 -2.91 -0.02 5.93 16 31 H 0.29 13.05 8.30 -92.71 -0.77 12.28 16 32 H 0.09 4.50 7.65 -2.91 -0.02 4.48 16 Total: -1.00 -61.83 275.59 5.47 -56.36 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: 1.11 Total: 25.28 kcal Atomic # 6 Polarization: -50.84 SS G_CDS: 3.86 Total: -46.98 kcal Atomic # 7 Polarization: -71.29 SS G_CDS: -1.52 Total: -72.81 kcal Atomic # 14 Polarization: 36.12 SS G_CDS: 2.03 Total: 38.15 kcal Total: -61.83 5.47 -56.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261196549.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.722 kcal (2) G-P(sol) polarization free energy of solvation -61.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds