Wall clock time and date at job start Mon Mar 30 2020 02:58:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52997 * 109.47358 * 2 1
4 4 N 1.46504 * 109.47480 * 120.00819 * 2 1 3
5 5 N 1.40020 * 126.00699 * 300.03676 * 4 2 1
6 6 C 1.30386 * 109.79060 * 179.69991 * 5 4 2
7 7 C 1.41155 * 108.81615 * 0.41496 * 6 5 4
8 8 C 1.40751 * 133.20335 * 179.87166 * 7 6 5
9 9 C 1.35578 * 120.18981 * 179.62263 * 8 7 6
10 10 C 1.41321 * 120.45421 * 0.06830 * 9 8 7
11 11 C 1.41079 * 119.98488 * 179.97438 * 10 9 8
12 12 H 1.07995 * 120.00239 * 154.84696 * 11 10 9
13 13 C 1.39962 * 119.99740 * 334.84565 * 11 10 9
14 14 N 1.30823 * 120.00307 * 342.06008 * 13 11 10
15 15 Si 1.86797 * 120.00089 * 162.06514 * 13 11 10
16 16 H 1.48504 * 109.47634 * 94.63694 * 15 13 11
17 17 H 1.48501 * 109.47345 * 214.64241 * 15 13 11
18 18 H 1.48499 * 109.46956 * 334.63983 * 15 13 11
19 19 C 1.40447 * 120.03382 * 359.96321 * 10 9 8
20 20 C 1.37448 * 126.01377 * 119.99172 * 4 2 1
21 21 H 1.09001 * 109.47208 * 59.99210 * 1 2 3
22 22 H 1.08995 * 109.47632 * 179.97438 * 1 2 3
23 23 H 1.09010 * 109.46512 * 299.99544 * 1 2 3
24 24 H 1.09004 * 109.46812 * 240.00144 * 2 1 3
25 25 H 1.08997 * 109.47304 * 180.02562 * 3 2 1
26 26 H 1.09001 * 109.47605 * 300.00546 * 3 2 1
27 27 H 1.09010 * 109.46937 * 60.00717 * 3 2 1
28 28 H 1.07998 * 125.58718 * 180.02562 * 6 5 4
29 29 H 1.07992 * 119.90269 * 359.66665 * 8 7 6
30 30 H 1.07998 * 119.77514 * 180.02562 * 9 8 7
31 31 H 0.97001 * 120.00502 * 180.02562 * 14 13 11
32 32 H 1.08002 * 120.24127 * 179.97438 * 19 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 7 2.0184 -0.6908 1.1961
5 7 1.7583 -0.3243 2.5222
6 6 2.3423 -1.1609 3.3340
7 6 3.0332 -2.1276 2.5721
8 6 3.8211 -3.2422 2.9156
9 6 4.3673 -4.0160 1.9455
10 6 4.1537 -3.7124 0.5819
11 6 4.7272 -4.5240 -0.4194
12 1 4.2757 -4.5729 -1.3992
13 6 5.8815 -5.2657 -0.1430
14 7 6.6255 -4.9580 0.8881
15 14 6.3598 -6.6951 -1.2464
16 1 7.3256 -6.2267 -2.2726
17 1 6.9865 -7.7640 -0.4280
18 1 5.1473 -7.2309 -1.9158
19 6 3.3704 -2.6032 0.2231
20 6 2.8118 -1.8130 1.2138
21 1 -0.3634 0.5140 -0.8899
22 1 -0.3634 -1.0276 -0.0005
23 1 -0.3633 0.5138 0.8901
24 1 1.8933 -0.5138 -0.8900
25 1 3.1300 1.4424 -0.0005
26 1 1.6767 1.9564 -0.8899
27 1 1.6768 1.9563 0.8901
28 1 2.3085 -1.1173 4.4126
29 1 3.9904 -3.4821 3.9548
30 1 4.9704 -4.8699 2.2166
31 1 7.4257 -5.4718 1.0795
32 1 3.2053 -2.3678 -0.8180
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261196549.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:58:32
Heat of formation + Delta-G solvation = 52.365138 kcal
Electronic energy + Delta-G solvation = -15461.867620 eV
Core-core repulsion = 13001.307572 eV
Total energy + Delta-G solvation = -2460.560048 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 230.111 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-41.74424 -38.12153 -36.36301 -34.97232 -32.25606 -30.96246 -29.33112 -28.17316
-27.13723 -23.68942 -23.05765 -22.41853 -20.34707 -19.24811 -17.45049 -17.18796
-16.96099 -15.76832 -15.45517 -15.28208 -15.21302 -14.34443 -14.19000 -13.92900
-13.54802 -13.13936 -13.11449 -12.89396 -12.77582 -12.53388 -12.38452 -12.16758
-12.00931 -11.82047 -11.36036 -11.23365 -10.94970 -10.59627 -9.18213 -8.78491
-8.41891 -6.41287 0.51751 1.22911 1.40438 1.45838 1.55890 1.82815
1.98999 2.19881 2.73539 3.63053 3.69010 4.06161 4.06615 4.21175
4.30405 4.51328 4.66332 4.67632 4.80677 4.81200 4.89320 5.00846
5.04850 5.13131 5.23154 5.24661 5.36392 5.63383 5.87106 6.01592
6.03193 6.27263 6.52428 6.59722 6.85485 6.93477 7.14189 8.23091
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.036330 B = 0.007139 C = 0.006311
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 770.526912 B = 3921.160583 C = 4435.722875
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.156 3.844
3 C -0.147 4.147
4 N -0.423 5.423
5 N -0.315 5.315
6 C 0.077 3.923
7 C -0.295 4.295
8 C -0.049 4.049
9 C -0.181 4.181
10 C 0.126 3.874
11 C -0.482 4.482
12 H 0.080 0.920
13 C 0.040 3.960
14 N -0.809 5.809
15 Si 0.986 3.014
16 H -0.261 1.261
17 H -0.261 1.261
18 H -0.258 1.258
19 C -0.312 4.312
20 C 0.154 3.846
21 H 0.101 0.899
22 H 0.042 0.958
23 H 0.059 0.941
24 H 0.087 0.913
25 H 0.039 0.961
26 H 0.101 0.899
27 H 0.060 0.940
28 H 0.209 0.791
29 H 0.126 0.874
30 H 0.114 0.886
31 H 0.295 0.705
32 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.733 3.699 -1.077 6.103
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C 0.054 3.946
3 C -0.205 4.205
4 N -0.213 5.213
5 N -0.129 5.129
6 C -0.116 4.116
7 C -0.303 4.303
8 C -0.070 4.070
9 C -0.201 4.201
10 C 0.121 3.879
11 C -0.510 4.510
12 H 0.098 0.902
13 C -0.178 4.178
14 N -0.433 5.433
15 Si 0.806 3.194
16 H -0.186 1.186
17 H -0.185 1.185
18 H -0.182 1.182
19 C -0.337 4.337
20 C 0.040 3.960
21 H 0.119 0.881
22 H 0.061 0.939
23 H 0.079 0.921
24 H 0.106 0.894
25 H 0.058 0.942
26 H 0.120 0.880
27 H 0.079 0.921
28 H 0.225 0.775
29 H 0.143 0.857
30 H 0.131 0.869
31 H 0.106 0.894
32 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges -5.336 4.829 -1.155 7.289
hybrid contribution 0.986 -1.309 -0.360 1.678
sum -4.350 3.519 -1.515 5.797
Atomic orbital electron populations
1.22038 0.92678 1.01909 1.03755 1.21285 0.95977 0.93853 0.83459
1.22048 1.00472 0.94216 1.03772 1.48620 1.44868 1.23599 1.04227
1.76349 1.24522 1.24352 0.87683 1.23982 0.95408 0.91880 1.00348
1.18880 1.14084 1.04911 0.92458 1.20266 0.94985 0.92893 0.98844
1.21000 1.04159 1.02149 0.92831 1.17726 0.87989 0.88824 0.93373
1.19881 1.09115 1.22851 0.99204 0.90165 1.26856 0.94724 0.99342
0.96891 1.69860 1.11533 1.35810 1.26109 0.85131 0.79190 0.76751
0.78334 1.18612 1.18538 1.18175 1.19727 1.17008 1.01732 0.95264
1.18925 0.92465 0.88645 0.96000 0.88069 0.93904 0.92142 0.89444
0.94163 0.88035 0.92124 0.77452 0.85657 0.86851 0.89424 0.89224
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.00 9.45 71.98 0.68 -3.32 16
2 C 0.16 5.19 3.71 44.99 0.17 5.36 16
3 C -0.15 -4.12 9.45 71.98 0.68 -3.44 16
4 N -0.42 -17.98 3.35 -319.21 -1.07 -19.05 16
5 N -0.32 -13.02 12.30 -56.40 -0.69 -13.71 16
6 C 0.08 3.07 12.03 85.62 1.03 4.10 16
7 C -0.29 -13.84 6.17 -21.23 -0.13 -13.97 16
8 C -0.05 -2.30 10.03 22.27 0.22 -2.08 16
9 C -0.18 -9.42 8.59 22.41 0.19 -9.23 16
10 C 0.13 6.85 5.57 -21.29 -0.12 6.73 16
11 C -0.48 -25.42 9.02 23.39 0.21 -25.21 16
12 H 0.08 4.09 7.91 -2.91 -0.02 4.06 16
13 C 0.04 1.91 5.12 85.26 0.44 2.34 16
14 N -0.81 -40.29 10.98 21.83 0.24 -40.05 16
15 Si 0.99 36.12 29.60 68.60 2.03 38.15 16
16 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16
17 H -0.26 -8.99 7.11 99.48 0.71 -8.29 16
18 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16
19 C -0.31 -16.31 9.59 22.87 0.22 -16.09 16
20 C 0.15 7.56 6.87 39.04 0.27 7.83 16
21 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16
22 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16
23 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16
24 H 0.09 2.95 7.47 -2.38 -0.02 2.93 16
25 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16
26 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16
27 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16
28 H 0.21 6.25 8.06 -2.91 -0.02 6.23 16
29 H 0.13 4.92 8.06 -2.91 -0.02 4.90 16
30 H 0.11 5.95 6.17 -2.91 -0.02 5.93 16
31 H 0.29 13.05 8.30 -92.71 -0.77 12.28 16
32 H 0.09 4.50 7.65 -2.91 -0.02 4.48 16
Total: -1.00 -61.83 275.59 5.47 -56.36
By element:
Atomic # 1 Polarization: 24.17 SS G_CDS: 1.11 Total: 25.28 kcal
Atomic # 6 Polarization: -50.84 SS G_CDS: 3.86 Total: -46.98 kcal
Atomic # 7 Polarization: -71.29 SS G_CDS: -1.52 Total: -72.81 kcal
Atomic # 14 Polarization: 36.12 SS G_CDS: 2.03 Total: 38.15 kcal
Total: -61.83 5.47 -56.36 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261196549.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 108.722 kcal
(2) G-P(sol) polarization free energy of solvation -61.830 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.892 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.473 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.356 kcal
(6) G-S(sol) free energy of system = (1) + (5) 52.365 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds