Wall clock time and date at job start Mon Mar 30 2020 03:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46502 * 109.46916 * 2 1 4 4 N 1.28474 * 123.98366 * 90.02616 * 3 2 1 5 5 C 1.32414 * 110.69585 * 179.97438 * 4 3 2 6 6 C 1.40087 * 135.16878 * 179.97438 * 5 4 3 7 7 C 1.39796 * 119.86681 * 180.02562 * 6 5 4 8 8 C 1.40968 * 119.42036 * 180.02562 * 7 6 5 9 9 H 1.07995 * 120.00186 * 334.43273 * 8 7 6 10 10 C 1.39855 * 119.99745 * 154.43303 * 8 7 6 11 11 N 1.30885 * 120.00363 * 342.33490 * 10 8 7 12 12 Si 1.86808 * 119.99791 * 162.33448 * 10 8 7 13 13 H 1.48501 * 109.47012 * 60.00246 * 12 10 8 14 14 H 1.48503 * 109.47142 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47229 * 300.00224 * 12 10 8 16 16 C 1.45984 * 121.15720 * 0.02765 * 7 6 5 17 17 C 1.35186 * 120.80345 * 359.95814 * 16 7 6 18 18 C 1.45558 * 119.44070 * 0.02984 * 17 16 7 19 19 C 1.34540 * 123.98109 * 270.02010 * 3 2 1 20 20 C 1.50704 * 126.52146 * 359.96985 * 19 3 2 21 21 H 1.09000 * 109.47344 * 300.00023 * 1 2 3 22 22 H 1.08995 * 109.47193 * 60.00147 * 1 2 3 23 23 H 1.08996 * 109.47152 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47344 * 239.99976 * 2 1 3 25 25 H 1.09005 * 109.47498 * 119.99402 * 2 1 3 26 26 H 1.07995 * 120.05994 * 0.02562 * 6 5 4 27 27 H 0.97004 * 120.00007 * 179.97438 * 11 10 8 28 28 H 1.08003 * 119.59793 * 179.97438 * 16 7 6 29 29 H 1.07994 * 120.27671 * 180.02562 * 17 16 7 30 30 H 1.08997 * 109.46877 * 270.04368 * 20 19 3 31 31 H 1.09001 * 109.47005 * 30.03671 * 20 19 3 32 32 H 1.08991 * 109.47374 * 150.04010 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.2580 2.0581 1.0653 5 6 2.6879 3.2730 0.7610 6 6 3.0860 4.3986 1.4938 7 6 3.4951 5.5559 0.8248 8 6 3.8942 6.6829 1.5717 9 1 3.5179 6.8278 2.5735 10 6 4.7776 7.6135 1.0151 11 7 5.4980 7.2891 -0.0284 12 14 4.9293 9.3194 1.7611 13 1 5.3725 9.2043 3.1737 14 1 5.9254 10.1088 0.9930 15 1 3.6110 10.0010 1.7100 16 6 3.5161 5.6178 -0.6335 17 6 3.1399 4.5534 -1.3771 18 6 2.7087 3.3326 -0.7120 19 6 2.2685 2.0904 -1.1156 20 6 2.1010 1.6161 -2.5363 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5137 0.8901 26 1 3.0768 4.3722 2.5734 27 1 6.1104 7.9347 -0.4146 28 1 3.8363 6.5250 -1.1244 29 1 3.1592 4.6084 -2.4555 30 1 3.0294 1.1590 -2.8785 31 1 1.2964 0.8822 -2.5818 32 1 1.8560 2.4639 -3.1759 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261200511.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:56 Heat of formation + Delta-G solvation = 77.073223 kcal Electronic energy + Delta-G solvation = -15354.379890 eV Core-core repulsion = 12894.891265 eV Total energy + Delta-G solvation = -2459.488625 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.12079 -36.19641 -33.96181 -32.67117 -31.81781 -29.26122 -28.72353 -25.84400 -25.69466 -23.18157 -21.04732 -20.62870 -18.44186 -17.22195 -15.99528 -15.66676 -15.14648 -14.92858 -13.99551 -13.85339 -13.09998 -12.75030 -12.64055 -12.46989 -12.29545 -12.12402 -11.80365 -11.41359 -11.24046 -11.11356 -10.81045 -10.70353 -10.30697 -9.96036 -9.79774 -9.15185 -8.76302 -8.59580 -7.21040 -6.90126 -6.40850 -4.29717 2.13046 2.92564 3.06248 3.10057 3.37917 3.40910 3.82518 3.91485 4.59675 4.83826 5.13008 5.25180 5.35321 5.46718 5.62857 5.66134 5.69741 5.85712 6.00841 6.06416 6.18453 6.28273 6.69864 6.81034 6.92413 7.03864 7.16531 7.57623 7.76928 7.92110 8.02988 8.19784 8.24292 8.51610 8.88467 8.97204 9.44921 10.12186 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.054566 B = 0.006251 C = 0.005780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.016582 B = 4478.468872 C = 4843.403172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.122 3.878 3 N -0.283 5.283 4 N -0.375 5.375 5 C 0.132 3.868 6 C -0.288 4.288 7 C 0.133 3.867 8 C -0.447 4.447 9 H 0.082 0.918 10 C 0.075 3.925 11 N -0.793 5.793 12 Si 0.912 3.088 13 H -0.264 1.264 14 H -0.278 1.278 15 H -0.262 1.262 16 C -0.087 4.087 17 C -0.106 4.106 18 C -0.202 4.202 19 C 0.000 4.000 20 C -0.070 4.070 21 H 0.065 0.935 22 H 0.060 0.940 23 H 0.071 0.929 24 H 0.086 0.914 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.283 0.717 28 H 0.125 0.875 29 H 0.097 0.903 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.871 -7.192 -4.951 9.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.000 4.000 3 N -0.065 5.065 4 N -0.208 5.208 5 C -0.013 4.013 6 C -0.313 4.313 7 C 0.127 3.873 8 C -0.477 4.477 9 H 0.101 0.899 10 C -0.143 4.143 11 N -0.418 5.418 12 Si 0.736 3.264 13 H -0.189 1.189 14 H -0.203 1.203 15 H -0.187 1.187 16 C -0.107 4.107 17 C -0.127 4.127 18 C -0.212 4.212 19 C -0.131 4.131 20 C -0.128 4.128 21 H 0.085 0.915 22 H 0.079 0.921 23 H 0.089 0.911 24 H 0.104 0.896 25 H 0.109 0.891 26 H 0.111 0.889 27 H 0.094 0.906 28 H 0.142 0.858 29 H 0.115 0.885 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.005 -8.037 -4.164 10.343 hybrid contribution 0.383 1.189 -0.370 1.303 sum -4.622 -6.848 -4.535 9.424 Atomic orbital electron populations 1.22150 0.94681 1.02344 1.03345 1.21600 0.95128 0.79475 1.03798 1.44813 1.47647 1.11334 1.02659 1.73527 1.29836 1.07117 1.10319 1.20443 0.97569 0.91449 0.91877 1.19368 1.24279 0.91169 0.96512 1.18216 0.87520 0.90928 0.90645 1.19550 1.22568 1.04095 1.01529 0.89944 1.25989 0.93706 1.00405 0.94203 1.69843 1.16897 1.35775 1.19294 0.86303 0.79016 0.81025 0.80057 1.18850 1.20300 1.18698 1.22211 0.96688 0.97565 0.94225 1.20708 1.03471 0.91740 0.96741 1.20173 1.12085 0.94206 0.94710 1.20841 1.09225 0.93311 0.89698 1.20142 1.01177 1.01219 0.90298 0.91547 0.92124 0.91055 0.89552 0.89070 0.88902 0.90588 0.85773 0.88509 0.91647 0.92411 0.90594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 10.24 37.15 0.38 -1.59 16 2 C 0.12 1.69 6.51 -4.04 -0.03 1.66 16 3 N -0.28 -5.69 3.26 -56.59 -0.18 -5.88 16 4 N -0.38 -9.16 11.93 33.17 0.40 -8.76 16 5 C 0.13 3.52 7.50 -83.18 -0.62 2.90 16 6 C -0.29 -7.99 9.80 -38.31 -0.38 -8.36 16 7 C 0.13 3.67 5.67 -105.18 -0.60 3.07 16 8 C -0.45 -11.93 8.98 -37.94 -0.34 -12.27 16 9 H 0.08 2.13 7.90 -52.49 -0.41 1.71 16 10 C 0.08 1.86 5.12 -17.35 -0.09 1.77 16 11 N -0.79 -19.99 10.94 55.54 0.61 -19.38 16 12 Si 0.91 18.33 29.59 -169.99 -5.03 13.30 16 13 H -0.26 -5.29 7.11 56.52 0.40 -4.88 16 14 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 15 H -0.26 -5.23 7.11 56.52 0.40 -4.82 16 16 C -0.09 -2.25 8.69 -37.57 -0.33 -2.58 16 17 C -0.11 -2.53 10.26 -37.75 -0.39 -2.91 16 18 C -0.20 -4.91 6.54 -103.38 -0.68 -5.58 16 19 C 0.00 -0.01 6.98 -81.55 -0.57 -0.58 16 20 C -0.07 -1.00 9.82 36.01 0.35 -0.65 16 21 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.09 0.95 7.45 -51.93 -0.39 0.56 16 25 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 26 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 27 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 28 H 0.12 3.16 6.22 -52.48 -0.33 2.83 16 29 H 0.10 1.98 8.06 -52.49 -0.42 1.55 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.67 7.57 -51.93 -0.39 0.27 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 275.57 15.07 4.15 4.15 Total: -1.00 -31.06 275.57 -7.37 -38.43 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -4.04 Total: 3.26 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: -3.28 Total: -25.13 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.82 Total: -34.02 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.06 -7.37 -38.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261200511.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.504 kcal (2) G-P(sol) polarization free energy of solvation -31.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds