Wall clock time and date at job start Mon Mar 30 2020 03:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46502 * 109.46916 * 2 1 4 4 N 1.28474 * 123.98366 * 90.02616 * 3 2 1 5 5 C 1.32414 * 110.69585 * 179.97438 * 4 3 2 6 6 C 1.40087 * 135.16878 * 179.97438 * 5 4 3 7 7 C 1.39796 * 119.86681 * 180.02562 * 6 5 4 8 8 C 1.40968 * 119.42036 * 180.02562 * 7 6 5 9 9 H 1.07995 * 120.00186 * 334.43273 * 8 7 6 10 10 C 1.39855 * 119.99745 * 154.43303 * 8 7 6 11 11 N 1.30885 * 120.00363 * 342.33490 * 10 8 7 12 12 Si 1.86808 * 119.99791 * 162.33448 * 10 8 7 13 13 H 1.48501 * 109.47012 * 60.00246 * 12 10 8 14 14 H 1.48503 * 109.47142 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47229 * 300.00224 * 12 10 8 16 16 C 1.45984 * 121.15720 * 0.02765 * 7 6 5 17 17 C 1.35186 * 120.80345 * 359.95814 * 16 7 6 18 18 C 1.45558 * 119.44070 * 0.02984 * 17 16 7 19 19 C 1.34540 * 123.98109 * 270.02010 * 3 2 1 20 20 C 1.50704 * 126.52146 * 359.96985 * 19 3 2 21 21 H 1.09000 * 109.47344 * 300.00023 * 1 2 3 22 22 H 1.08995 * 109.47193 * 60.00147 * 1 2 3 23 23 H 1.08996 * 109.47152 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47344 * 239.99976 * 2 1 3 25 25 H 1.09005 * 109.47498 * 119.99402 * 2 1 3 26 26 H 1.07995 * 120.05994 * 0.02562 * 6 5 4 27 27 H 0.97004 * 120.00007 * 179.97438 * 11 10 8 28 28 H 1.08003 * 119.59793 * 179.97438 * 16 7 6 29 29 H 1.07994 * 120.27671 * 180.02562 * 17 16 7 30 30 H 1.08997 * 109.46877 * 270.04368 * 20 19 3 31 31 H 1.09001 * 109.47005 * 30.03671 * 20 19 3 32 32 H 1.08991 * 109.47374 * 150.04010 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.2580 2.0581 1.0653 5 6 2.6879 3.2730 0.7610 6 6 3.0860 4.3986 1.4938 7 6 3.4951 5.5559 0.8248 8 6 3.8942 6.6829 1.5717 9 1 3.5179 6.8278 2.5735 10 6 4.7776 7.6135 1.0151 11 7 5.4980 7.2891 -0.0284 12 14 4.9293 9.3194 1.7611 13 1 5.3725 9.2043 3.1737 14 1 5.9254 10.1088 0.9930 15 1 3.6110 10.0010 1.7100 16 6 3.5161 5.6178 -0.6335 17 6 3.1399 4.5534 -1.3771 18 6 2.7087 3.3326 -0.7120 19 6 2.2685 2.0904 -1.1156 20 6 2.1010 1.6161 -2.5363 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5137 0.8901 26 1 3.0768 4.3722 2.5734 27 1 6.1104 7.9347 -0.4146 28 1 3.8363 6.5250 -1.1244 29 1 3.1592 4.6084 -2.4555 30 1 3.0294 1.1590 -2.8785 31 1 1.2964 0.8822 -2.5818 32 1 1.8560 2.4639 -3.1759 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261200511.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:56 Heat of formation + Delta-G solvation = 58.423297 kcal Electronic energy + Delta-G solvation = -15355.188612 eV Core-core repulsion = 12894.891265 eV Total energy + Delta-G solvation = -2460.297347 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.81646 -38.04388 -35.58716 -34.30120 -33.34289 -31.06839 -30.34203 -27.49868 -27.33612 -24.63701 -22.83735 -22.32510 -20.22506 -19.00376 -17.60720 -17.41270 -16.89151 -16.49283 -15.54049 -15.17351 -14.79558 -14.25266 -14.22014 -13.85860 -13.62229 -13.48930 -13.11858 -12.88988 -12.79420 -12.71303 -12.35891 -12.25836 -12.01726 -11.75656 -11.65251 -10.99916 -10.62639 -10.39265 -9.08164 -8.77305 -8.26281 -6.31928 0.36162 1.20391 1.40895 1.52976 1.63150 1.97422 2.01665 2.22097 2.68943 3.65373 3.70302 3.87961 4.09454 4.18925 4.29759 4.34244 4.45869 4.74580 4.81362 4.84509 4.92545 4.97177 5.02741 5.13114 5.19379 5.21733 5.25389 5.70214 5.85123 5.98758 6.16238 6.27826 6.48993 6.53074 6.90830 6.99331 7.64797 8.26849 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.054566 B = 0.006251 C = 0.005780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.016582 B = 4478.468872 C = 4843.403172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.105 3.895 3 N -0.276 5.276 4 N -0.403 5.403 5 C 0.096 3.904 6 C -0.326 4.326 7 C 0.113 3.887 8 C -0.486 4.486 9 H 0.074 0.926 10 C 0.041 3.959 11 N -0.814 5.814 12 Si 0.989 3.011 13 H -0.263 1.263 14 H -0.260 1.260 15 H -0.258 1.258 16 C -0.125 4.125 17 C -0.083 4.083 18 C -0.252 4.252 19 C 0.031 3.969 20 C -0.070 4.070 21 H 0.037 0.963 22 H 0.064 0.936 23 H 0.113 0.887 24 H 0.129 0.871 25 H 0.094 0.906 26 H 0.070 0.930 27 H 0.295 0.705 28 H 0.121 0.879 29 H 0.134 0.866 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.380 -8.535 -7.396 12.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.014 4.014 3 N -0.057 5.057 4 N -0.237 5.237 5 C -0.049 4.049 6 C -0.352 4.352 7 C 0.107 3.893 8 C -0.515 4.515 9 H 0.092 0.908 10 C -0.176 4.176 11 N -0.439 5.439 12 Si 0.809 3.191 13 H -0.187 1.187 14 H -0.183 1.183 15 H -0.182 1.182 16 C -0.145 4.145 17 C -0.103 4.103 18 C -0.261 4.261 19 C -0.102 4.102 20 C -0.128 4.128 21 H 0.056 0.944 22 H 0.083 0.917 23 H 0.131 0.869 24 H 0.147 0.853 25 H 0.113 0.887 26 H 0.088 0.912 27 H 0.106 0.894 28 H 0.139 0.861 29 H 0.152 0.848 30 H 0.107 0.893 31 H 0.114 0.886 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.521 -9.413 -6.602 12.754 hybrid contribution 0.480 1.336 0.324 1.457 sum -5.040 -8.076 -6.278 11.404 Atomic orbital electron populations 1.22119 0.92797 1.04692 1.02122 1.22246 0.96653 0.76338 1.06170 1.45499 1.45432 1.12963 1.01789 1.73447 1.30798 1.06879 1.12567 1.20579 0.98686 0.91954 0.93676 1.19388 1.27189 0.92912 0.95666 1.18567 0.87492 0.91053 0.92139 1.19775 1.24404 1.05612 1.01734 0.90825 1.26834 0.92354 1.03951 0.94478 1.69868 1.16756 1.37394 1.19915 0.85160 0.79429 0.75412 0.79141 1.18723 1.18340 1.18229 1.22120 1.00270 0.98667 0.93423 1.21072 1.00148 0.90745 0.98330 1.20538 1.15416 0.96504 0.93664 1.21723 1.04786 0.91494 0.92243 1.20416 1.03834 1.02753 0.85806 0.94391 0.91716 0.86892 0.85255 0.88741 0.91187 0.89396 0.86089 0.84818 0.89257 0.88636 0.89526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.19 10.24 71.98 0.74 -2.46 16 2 C 0.10 2.53 6.51 86.38 0.56 3.09 16 3 N -0.28 -10.62 3.26 -332.97 -1.09 -11.71 16 4 N -0.40 -20.11 11.93 -48.98 -0.58 -20.69 16 5 C 0.10 5.36 7.50 41.93 0.31 5.68 16 6 C -0.33 -19.62 9.80 23.10 0.23 -19.40 16 7 C 0.11 6.68 5.67 -20.23 -0.11 6.57 16 8 C -0.49 -27.59 8.98 23.33 0.21 -27.38 16 9 H 0.07 4.12 7.90 -2.91 -0.02 4.10 16 10 C 0.04 2.06 5.12 85.23 0.44 2.49 16 11 N -0.81 -41.86 10.94 21.81 0.24 -41.62 16 12 Si 0.99 38.01 29.59 68.60 2.03 40.04 16 13 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 14 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 15 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 16 C -0.13 -6.73 8.69 23.57 0.20 -6.53 16 17 C -0.08 -3.95 10.26 23.45 0.24 -3.71 16 18 C -0.25 -12.26 6.54 -19.06 -0.12 -12.38 16 19 C 0.03 1.18 6.98 42.05 0.29 1.48 16 20 C -0.07 -1.63 9.82 71.24 0.70 -0.93 16 21 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 22 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.13 2.07 7.45 -2.39 -0.02 2.05 16 25 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 26 H 0.07 4.28 8.06 -2.91 -0.02 4.25 16 27 H 0.30 13.44 8.30 -92.71 -0.77 12.67 16 28 H 0.12 6.39 6.22 -2.91 -0.02 6.38 16 29 H 0.13 5.18 8.06 -2.91 -0.02 5.16 16 30 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.09 1.55 7.57 -2.39 -0.02 1.54 16 32 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -73.98 275.57 5.39 -68.59 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 1.11 Total: 18.87 kcal Atomic # 6 Polarization: -57.16 SS G_CDS: 3.69 Total: -53.47 kcal Atomic # 7 Polarization: -72.59 SS G_CDS: -1.43 Total: -74.02 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 2.03 Total: 40.04 kcal Total: -73.98 5.39 -68.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261200511.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.012 kcal (2) G-P(sol) polarization free energy of solvation -73.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds