Wall clock time and date at job start Mon Mar 30 2020 02:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47083 * 2 1 4 4 N 1.46496 * 109.46931 * 120.00088 * 2 1 3 5 5 C 1.34598 * 125.11454 * 274.71875 * 4 2 1 6 6 C 1.37140 * 107.96427 * 179.84028 * 5 4 2 7 7 C 1.47063 * 106.75078 * 0.40971 * 6 5 4 8 8 C 1.40983 * 118.77045 * 179.72193 * 7 6 5 9 9 C 1.37482 * 120.71789 * 0.02562 * 8 7 6 10 10 C 1.38125 * 122.60397 * 0.02562 * 9 8 7 11 11 C 1.40489 * 121.10669 * 359.97438 * 10 9 8 12 12 C 1.40135 * 120.76978 * 180.02562 * 11 10 9 13 13 H 1.08004 * 120.00524 * 204.53681 * 12 11 10 14 14 C 1.40078 * 120.00012 * 24.53685 * 12 11 10 15 15 N 1.30788 * 119.99746 * 17.81845 * 14 12 11 16 16 Si 1.86799 * 119.99956 * 197.82336 * 14 12 11 17 17 H 1.48500 * 109.47254 * 94.69332 * 16 14 12 18 18 H 1.48503 * 109.46762 * 214.69098 * 16 14 12 19 19 H 1.48496 * 109.47428 * 334.69205 * 16 14 12 20 20 N 1.32228 * 106.70022 * 359.75382 * 7 6 5 21 21 H 1.09003 * 109.46818 * 60.00249 * 1 2 3 22 22 H 1.08997 * 109.47560 * 300.00159 * 1 2 3 23 23 H 1.09003 * 109.47351 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46858 * 239.99978 * 2 1 3 25 25 H 1.08998 * 109.47523 * 59.99762 * 3 2 1 26 26 H 1.09009 * 109.47263 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47271 * 300.00105 * 3 2 1 28 28 H 1.08003 * 126.01545 * 0.02562 * 5 4 2 29 29 H 1.08000 * 119.64062 * 180.02562 * 8 7 6 30 30 H 1.08007 * 118.69823 * 179.97438 * 9 8 7 31 31 H 1.07992 * 119.45193 * 179.97438 * 10 9 8 32 32 H 0.96994 * 119.99822 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1909 -0.1204 2.4031 6 6 2.6556 -1.0825 3.2628 7 6 2.7735 -2.3249 2.4848 8 6 3.2411 -3.4879 3.1302 9 6 3.5806 -3.4636 4.4623 10 6 3.4858 -2.3218 5.2337 11 6 3.0310 -1.1109 4.6853 12 6 2.9381 0.0434 5.4743 13 1 2.2506 0.8304 5.2013 14 6 3.7369 0.1767 6.6173 15 7 4.7949 -0.5774 6.7671 16 14 3.2909 1.4313 7.9274 17 1 2.4884 0.7736 8.9898 18 1 4.5323 1.9911 8.5197 19 1 2.4974 2.5266 7.3143 20 7 2.3813 -2.0414 1.2543 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.6766 1.9563 0.8899 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.9949 0.9122 2.6515 29 1 3.3336 -4.4079 2.5722 30 1 3.9347 -4.3735 4.9239 31 1 3.7659 -2.3603 6.2760 32 1 5.3483 -0.4848 7.5584 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261200571.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:42 Heat of formation + Delta-G solvation = 76.833408 kcal Electronic energy + Delta-G solvation = -15464.156304 eV Core-core repulsion = 13004.657280 eV Total energy + Delta-G solvation = -2459.499024 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.88682 -36.33271 -34.62655 -33.17646 -30.49861 -28.65887 -27.75270 -27.08838 -25.20754 -23.15369 -20.41529 -20.11504 -19.10884 -16.91818 -16.39683 -15.46071 -15.11814 -14.56823 -14.12487 -13.80636 -13.11143 -12.96695 -12.61268 -12.26987 -12.12959 -11.82030 -11.57180 -11.35208 -11.31710 -11.08944 -10.95549 -10.58317 -10.23455 -9.93449 -9.64441 -9.36027 -8.92492 -8.60288 -7.27076 -6.96719 -6.46431 -4.34504 2.04914 2.89782 2.96880 2.99216 3.31573 3.52342 3.71250 3.76853 4.61660 4.76881 5.06450 5.21060 5.46850 5.52114 5.66935 5.70095 5.74405 5.84627 5.94349 6.21881 6.23624 6.57203 6.63593 6.82780 6.88154 7.07707 7.23565 7.54471 7.78296 7.99620 8.04499 8.26984 8.33432 8.57126 8.74553 8.85312 9.14547 9.91895 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.025784 B = 0.008517 C = 0.006744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.684757 B = 3286.649834 C = 4150.820468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.158 3.842 3 C -0.164 4.164 4 N -0.364 5.364 5 C 0.069 3.931 6 C -0.222 4.222 7 C 0.151 3.849 8 C -0.296 4.296 9 C -0.006 4.006 10 C -0.284 4.284 11 C 0.175 3.825 12 C -0.423 4.423 13 H 0.082 0.918 14 C 0.072 3.928 15 N -0.754 5.754 16 Si 0.913 3.087 17 H -0.264 1.264 18 H -0.274 1.274 19 H -0.259 1.259 20 N -0.372 5.372 21 H 0.068 0.932 22 H 0.060 0.940 23 H 0.063 0.937 24 H 0.094 0.906 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.161 0.839 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.114 0.886 32 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.388 5.815 -4.825 8.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.055 3.945 3 C -0.222 4.222 4 N -0.142 5.142 5 C -0.081 4.081 6 C -0.233 4.233 7 C -0.001 4.001 8 C -0.320 4.320 9 C -0.028 4.028 10 C -0.306 4.306 11 C 0.169 3.831 12 C -0.451 4.451 13 H 0.100 0.900 14 C -0.151 4.151 15 N -0.376 5.376 16 Si 0.737 3.263 17 H -0.189 1.189 18 H -0.199 1.199 19 H -0.183 1.183 20 N -0.199 5.199 21 H 0.087 0.913 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.112 0.888 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.178 0.822 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.132 0.868 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.426 5.386 -6.048 9.229 hybrid contribution 0.085 0.888 1.380 1.643 sum -4.341 6.274 -4.669 8.944 Atomic orbital electron populations 1.22222 0.94473 1.03012 1.02310 1.20999 0.94263 0.92374 0.86896 1.22190 1.02340 0.94636 1.03021 1.48447 1.50429 1.07961 1.07354 1.21957 1.01844 0.98357 0.85937 1.20906 1.13492 0.93004 0.95883 1.20739 0.94831 0.94780 0.89731 1.18980 1.23189 0.94623 0.95233 1.20272 0.93179 0.96553 0.92803 1.20567 1.18716 0.91564 0.99710 1.17895 0.86200 0.92763 0.86213 1.19590 1.17439 1.02664 1.05380 0.89958 1.26093 0.93440 0.96798 0.98730 1.69872 1.09041 1.32624 1.26025 0.86206 0.79263 0.80517 0.80346 1.18918 1.19936 1.18279 1.77526 1.31966 0.91141 1.19270 0.91279 0.92063 0.91781 0.88798 0.91539 0.91596 0.90725 0.82159 0.89485 0.89632 0.86835 0.90244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.52 37.16 0.35 -1.70 16 2 C 0.16 2.34 3.88 -67.94 -0.26 2.08 16 3 C -0.16 -1.94 8.80 37.15 0.33 -1.61 16 4 N -0.36 -7.49 3.49 -54.48 -0.19 -7.68 16 5 C 0.07 1.49 10.51 -16.74 -0.18 1.31 16 6 C -0.22 -5.72 6.32 -103.11 -0.65 -6.37 16 7 C 0.15 3.99 7.48 -83.08 -0.62 3.36 16 8 C -0.30 -7.63 10.09 -38.82 -0.39 -8.02 16 9 C -0.01 -0.15 9.86 -39.90 -0.39 -0.54 16 10 C -0.28 -7.60 8.67 -38.78 -0.34 -7.94 16 11 C 0.17 4.68 5.72 -104.73 -0.60 4.08 16 12 C -0.42 -10.62 9.01 -38.18 -0.34 -10.96 16 13 H 0.08 1.93 7.91 -52.48 -0.42 1.51 16 14 C 0.07 1.71 5.14 -17.31 -0.09 1.62 16 15 N -0.75 -18.56 10.97 55.56 0.61 -17.96 16 16 Si 0.91 17.29 29.60 -169.99 -5.03 12.25 16 17 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 18 H -0.27 -5.08 7.11 56.52 0.40 -4.67 16 19 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 20 N -0.37 -9.17 12.56 33.23 0.42 -8.75 16 21 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 25 H 0.07 0.77 7.06 -51.93 -0.37 0.40 16 26 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.16 2.93 7.15 -52.48 -0.38 2.55 16 29 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 30 H 0.09 1.90 8.06 -52.48 -0.42 1.47 16 31 H 0.11 3.07 6.14 -52.49 -0.32 2.74 16 32 H 0.29 6.30 8.29 -40.82 -0.34 5.96 16 LS Contribution 274.46 15.07 4.14 4.14 Total: -1.00 -30.09 274.46 -7.24 -37.33 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -4.00 Total: 5.35 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: -3.19 Total: -24.69 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.84 Total: -34.38 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.03 Total: 12.25 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.09 -7.24 -37.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261200571.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.165 kcal (2) G-P(sol) polarization free energy of solvation -30.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds