Wall clock time and date at job start Mon Mar 30 2020 02:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47083 * 2 1 4 4 N 1.46496 * 109.46931 * 120.00088 * 2 1 3 5 5 C 1.34598 * 125.11454 * 274.71875 * 4 2 1 6 6 C 1.37140 * 107.96427 * 179.84028 * 5 4 2 7 7 C 1.47063 * 106.75078 * 0.40971 * 6 5 4 8 8 C 1.40983 * 118.77045 * 179.72193 * 7 6 5 9 9 C 1.37482 * 120.71789 * 0.02562 * 8 7 6 10 10 C 1.38125 * 122.60397 * 0.02562 * 9 8 7 11 11 C 1.40489 * 121.10669 * 359.97438 * 10 9 8 12 12 C 1.40135 * 120.76978 * 180.02562 * 11 10 9 13 13 H 1.08004 * 120.00524 * 204.53681 * 12 11 10 14 14 C 1.40078 * 120.00012 * 24.53685 * 12 11 10 15 15 N 1.30788 * 119.99746 * 17.81845 * 14 12 11 16 16 Si 1.86799 * 119.99956 * 197.82336 * 14 12 11 17 17 H 1.48500 * 109.47254 * 94.69332 * 16 14 12 18 18 H 1.48503 * 109.46762 * 214.69098 * 16 14 12 19 19 H 1.48496 * 109.47428 * 334.69205 * 16 14 12 20 20 N 1.32228 * 106.70022 * 359.75382 * 7 6 5 21 21 H 1.09003 * 109.46818 * 60.00249 * 1 2 3 22 22 H 1.08997 * 109.47560 * 300.00159 * 1 2 3 23 23 H 1.09003 * 109.47351 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46858 * 239.99978 * 2 1 3 25 25 H 1.08998 * 109.47523 * 59.99762 * 3 2 1 26 26 H 1.09009 * 109.47263 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47271 * 300.00105 * 3 2 1 28 28 H 1.08003 * 126.01545 * 0.02562 * 5 4 2 29 29 H 1.08000 * 119.64062 * 180.02562 * 8 7 6 30 30 H 1.08007 * 118.69823 * 179.97438 * 9 8 7 31 31 H 1.07992 * 119.45193 * 179.97438 * 10 9 8 32 32 H 0.96994 * 119.99822 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1909 -0.1204 2.4031 6 6 2.6556 -1.0825 3.2628 7 6 2.7735 -2.3249 2.4848 8 6 3.2411 -3.4879 3.1302 9 6 3.5806 -3.4636 4.4623 10 6 3.4858 -2.3218 5.2337 11 6 3.0310 -1.1109 4.6853 12 6 2.9381 0.0434 5.4743 13 1 2.2506 0.8304 5.2013 14 6 3.7369 0.1767 6.6173 15 7 4.7949 -0.5774 6.7671 16 14 3.2909 1.4313 7.9274 17 1 2.4884 0.7736 8.9898 18 1 4.5323 1.9911 8.5197 19 1 2.4974 2.5266 7.3143 20 7 2.3813 -2.0414 1.2543 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.6766 1.9563 0.8899 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.9949 0.9122 2.6515 29 1 3.3336 -4.4079 2.5722 30 1 3.9347 -4.3735 4.9239 31 1 3.7659 -2.3603 6.2760 32 1 5.3483 -0.4848 7.5584 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261200571.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:41 Heat of formation + Delta-G solvation = 59.662491 kcal Electronic energy + Delta-G solvation = -15464.900891 eV Core-core repulsion = 13004.657280 eV Total energy + Delta-G solvation = -2460.243611 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.62651 -38.02682 -36.19835 -34.90808 -32.36592 -30.36297 -29.48064 -28.15515 -27.09435 -24.78328 -22.23741 -21.80165 -20.73767 -18.78643 -17.95867 -17.25196 -16.73638 -16.02021 -15.86432 -15.14236 -14.80456 -14.61768 -13.93321 -13.77430 -13.39332 -13.23597 -13.05794 -12.92203 -12.86494 -12.43898 -12.31164 -12.09676 -11.88551 -11.69800 -11.50814 -11.16325 -10.79894 -10.47398 -9.11829 -8.76449 -8.36466 -6.28885 0.24621 1.37652 1.43378 1.57391 1.59863 1.81792 1.90583 2.17500 2.75937 3.56768 3.72696 3.94308 3.97123 4.12855 4.17053 4.60696 4.65521 4.70835 4.80450 4.80930 4.86831 5.02037 5.04945 5.14152 5.22939 5.25271 5.34194 5.63837 5.85302 6.10115 6.28734 6.35572 6.49204 6.64465 6.81952 6.93343 7.25822 8.16336 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.025784 B = 0.008517 C = 0.006744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.684757 B = 3286.649834 C = 4150.820468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.140 3.860 3 C -0.157 4.157 4 N -0.350 5.350 5 C 0.090 3.910 6 C -0.269 4.269 7 C 0.121 3.879 8 C -0.319 4.319 9 C -0.012 4.012 10 C -0.313 4.313 11 C 0.153 3.847 12 C -0.441 4.441 13 H 0.097 0.903 14 C 0.032 3.968 15 N -0.785 5.785 16 Si 0.993 3.007 17 H -0.262 1.262 18 H -0.265 1.265 19 H -0.247 1.247 20 N -0.396 5.396 21 H 0.110 0.890 22 H 0.061 0.939 23 H 0.041 0.959 24 H 0.096 0.904 25 H 0.072 0.928 26 H 0.052 0.948 27 H 0.114 0.886 28 H 0.199 0.801 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.472 8.736 -5.181 11.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.040 3.960 3 C -0.215 4.215 4 N -0.127 5.127 5 C -0.062 4.062 6 C -0.279 4.279 7 C -0.029 4.029 8 C -0.343 4.343 9 C -0.034 4.034 10 C -0.335 4.335 11 C 0.147 3.853 12 C -0.468 4.468 13 H 0.115 0.885 14 C -0.188 4.188 15 N -0.408 5.408 16 Si 0.812 3.188 17 H -0.187 1.187 18 H -0.190 1.190 19 H -0.169 1.169 20 N -0.224 5.224 21 H 0.129 0.871 22 H 0.080 0.920 23 H 0.060 0.940 24 H 0.115 0.885 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.132 0.868 28 H 0.215 0.785 29 H 0.110 0.890 30 H 0.124 0.876 31 H 0.120 0.880 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.512 8.285 -6.451 11.860 hybrid contribution 0.407 0.050 1.369 1.429 sum -5.105 8.335 -5.082 11.017 Atomic orbital electron populations 1.22188 0.92342 1.02268 1.04424 1.21649 0.95942 0.93784 0.84644 1.22202 1.01543 0.92382 1.05335 1.48970 1.48198 1.06754 1.08776 1.22393 0.99321 0.99115 0.85394 1.21191 1.16499 0.94097 0.96161 1.21002 0.95769 0.95536 0.90638 1.19171 1.24354 0.95154 0.95670 1.20455 0.93060 0.97108 0.92797 1.20607 1.20793 0.92632 0.99459 1.18276 0.86297 0.93401 0.87280 1.19960 1.17979 1.02586 1.06301 0.88510 1.27101 0.92627 0.98756 1.00342 1.69923 1.09904 1.33847 1.27076 0.85020 0.79243 0.77737 0.76805 1.18703 1.18978 1.16945 1.77405 1.32526 0.93726 1.18724 0.87113 0.91969 0.93962 0.88549 0.90878 0.92851 0.86771 0.78454 0.88968 0.87578 0.87978 0.89174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 9.52 71.98 0.69 -2.75 16 2 C 0.14 3.80 3.88 44.99 0.17 3.97 16 3 C -0.16 -3.09 8.80 71.98 0.63 -2.46 16 4 N -0.35 -14.03 3.49 -326.27 -1.14 -15.16 16 5 C 0.09 3.81 10.51 84.01 0.88 4.69 16 6 C -0.27 -14.07 6.32 -18.88 -0.12 -14.19 16 7 C 0.12 6.62 7.48 42.07 0.31 6.93 16 8 C -0.32 -17.20 10.09 22.76 0.23 -16.97 16 9 C -0.01 -0.65 9.86 22.06 0.22 -0.43 16 10 C -0.31 -17.50 8.67 22.79 0.20 -17.30 16 11 C 0.15 8.40 5.72 -19.93 -0.11 8.28 16 12 C -0.44 -22.12 9.01 23.18 0.21 -21.91 16 13 H 0.10 4.40 7.91 -2.91 -0.02 4.38 16 14 C 0.03 1.51 5.14 85.29 0.44 1.94 16 15 N -0.79 -39.01 10.97 21.85 0.24 -38.77 16 16 Si 0.99 34.13 29.60 68.60 2.03 36.16 16 17 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 18 H -0.27 -8.68 7.11 99.48 0.71 -7.98 16 19 H -0.25 -7.93 7.11 99.48 0.71 -7.22 16 20 N -0.40 -19.75 12.56 -48.78 -0.61 -20.36 16 21 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 22 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.04 1.12 8.14 -2.39 -0.02 1.11 16 24 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 25 H 0.07 1.37 7.06 -2.39 -0.02 1.35 16 26 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.11 1.40 8.14 -2.39 -0.02 1.39 16 28 H 0.20 6.64 7.15 -2.91 -0.02 6.62 16 29 H 0.09 4.66 8.06 -2.91 -0.02 4.64 16 30 H 0.11 4.91 8.06 -2.91 -0.02 4.88 16 31 H 0.10 5.77 6.14 -2.91 -0.02 5.76 16 32 H 0.30 13.05 8.29 -92.71 -0.77 12.28 16 Total: -1.00 -68.02 274.46 5.38 -62.65 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 1.11 Total: 25.68 kcal Atomic # 6 Polarization: -53.93 SS G_CDS: 3.75 Total: -50.18 kcal Atomic # 7 Polarization: -72.78 SS G_CDS: -1.51 Total: -74.30 kcal Atomic # 14 Polarization: 34.13 SS G_CDS: 2.03 Total: 36.16 kcal Total: -68.02 5.38 -62.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261200571.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.308 kcal (2) G-P(sol) polarization free energy of solvation -68.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds