Wall clock time and date at job start Mon Mar 30 2020 03:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.47035 * 2 1 4 4 C 1.33987 * 125.01932 * 124.72562 * 3 2 1 5 5 C 1.38239 * 107.90614 * 179.87728 * 4 3 2 6 6 C 1.41133 * 134.81610 * 180.02562 * 5 4 3 7 7 C 1.35650 * 119.53668 * 180.32495 * 6 5 4 8 8 C 1.50700 * 119.13778 * 180.02562 * 7 6 5 9 9 C 1.50694 * 109.47178 * 270.01443 * 8 7 6 10 10 H 1.07997 * 120.00098 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99898 * 179.97438 * 9 8 7 12 12 N 1.31521 * 119.99892 * 180.02562 * 11 9 8 13 13 Si 1.86794 * 120.00236 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.47205 * 89.99749 * 13 11 9 15 15 H 1.48500 * 109.47216 * 209.99847 * 13 11 9 16 16 H 1.48504 * 109.47196 * 329.99807 * 13 11 9 17 17 C 1.39690 * 121.72801 * 0.03115 * 7 6 5 18 18 C 1.35638 * 121.81193 * 359.97438 * 17 7 6 19 19 C 1.41150 * 119.59904 * 359.97438 * 18 17 7 20 20 N 1.32063 * 134.68215 * 179.97438 * 19 18 17 21 21 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46930 * 299.99770 * 1 2 3 23 23 H 1.09004 * 109.47059 * 59.99372 * 1 2 3 24 24 H 1.09004 * 109.46930 * 240.00230 * 2 1 3 25 25 H 1.09000 * 109.47312 * 120.00174 * 2 1 3 26 26 H 1.08004 * 126.04349 * 0.02562 * 4 3 2 27 27 H 1.08004 * 120.23027 * 0.31140 * 6 5 4 28 28 H 1.09002 * 109.46934 * 30.01617 * 8 7 6 29 29 H 1.09006 * 109.47134 * 150.01067 * 8 7 6 30 30 H 0.96991 * 119.99860 * 180.02562 * 12 11 9 31 31 H 1.07995 * 119.09010 * 179.97438 * 17 7 6 32 32 H 1.08005 * 120.19671 * 180.02562 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8640 1.8978 0.9019 5 6 3.0881 3.2199 0.5659 6 6 3.8612 4.2674 1.1107 7 6 3.8497 5.4864 0.5157 8 6 4.6791 6.5983 1.1047 9 6 3.8579 7.3560 2.1159 10 1 2.8377 7.0616 2.3128 11 6 4.4096 8.4244 2.7906 12 7 3.6931 9.0854 3.6735 13 14 6.1744 8.9333 2.4506 14 1 6.1986 9.9332 1.3530 15 1 6.7625 9.5299 3.6768 16 1 6.9652 7.7413 2.0518 17 6 3.0891 5.7382 -0.6286 18 6 2.3236 4.7775 -1.2040 19 6 2.2874 3.4841 -0.6399 20 7 1.6676 2.3572 -0.9398 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 3.2961 1.3733 1.7413 27 1 4.4578 4.0997 1.9953 28 1 5.5579 6.1767 1.5926 29 1 4.9941 7.2761 0.3112 30 1 4.0810 9.8372 4.1478 31 1 3.1111 6.7248 -1.0672 32 1 1.7460 5.0007 -2.0889 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261201111.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:51 Heat of formation + Delta-G solvation = 86.477897 kcal Electronic energy + Delta-G solvation = -14961.232416 eV Core-core repulsion = 12502.151608 eV Total energy + Delta-G solvation = -2459.080808 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.88137 -37.33482 -34.15109 -32.71548 -31.58573 -30.06799 -29.22001 -26.80774 -24.54982 -22.64442 -21.61442 -20.20133 -20.08900 -16.82227 -16.71451 -16.41259 -15.35196 -14.91461 -14.22595 -13.97534 -13.91316 -13.27608 -12.91392 -12.62970 -12.46014 -12.28743 -11.75532 -11.68933 -11.56799 -10.97448 -10.90726 -10.41702 -10.18002 -10.03341 -9.71514 -9.56056 -9.24036 -8.53299 -8.06511 -6.91441 -6.02279 -4.00636 1.09709 2.42834 2.53313 2.91152 3.32299 3.39968 3.43181 4.30806 4.46094 4.49353 4.70673 4.77972 4.93931 5.04984 5.29295 5.31057 5.52078 5.53285 5.73557 5.81729 5.92546 6.05668 6.16475 6.42063 6.62136 6.99174 7.00852 7.09178 7.13140 7.15331 7.53329 7.70720 7.76616 8.02975 8.56627 9.04607 9.58585 11.10890 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.050387 B = 0.005398 C = 0.005287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.566927 B = 5185.726089 C = 5294.713450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.124 3.876 3 N -0.332 5.332 4 C 0.054 3.946 5 C -0.187 4.187 6 C -0.067 4.067 7 C -0.067 4.067 8 C 0.018 3.982 9 C -0.511 4.511 10 H 0.074 0.926 11 C 0.068 3.932 12 N -0.902 5.902 13 Si 0.877 3.123 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.264 1.264 17 C -0.051 4.051 18 C -0.125 4.125 19 C 0.097 3.903 20 N -0.319 5.319 21 H 0.073 0.927 22 H 0.062 0.938 23 H 0.072 0.928 24 H 0.086 0.914 25 H 0.096 0.904 26 H 0.178 0.822 27 H 0.120 0.880 28 H 0.026 0.974 29 H 0.022 0.978 30 H 0.263 0.737 31 H 0.125 0.875 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.711 -16.870 -6.731 18.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.003 3.997 3 N -0.109 5.109 4 C -0.100 4.100 5 C -0.197 4.197 6 C -0.087 4.087 7 C -0.068 4.068 8 C -0.019 4.019 9 C -0.549 4.549 10 H 0.092 0.908 11 C -0.133 4.133 12 N -0.541 5.541 13 Si 0.705 3.295 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.189 1.189 17 C -0.074 4.074 18 C -0.146 4.146 19 C -0.056 4.056 20 N -0.147 5.147 21 H 0.092 0.908 22 H 0.081 0.919 23 H 0.091 0.909 24 H 0.104 0.896 25 H 0.115 0.885 26 H 0.195 0.805 27 H 0.137 0.863 28 H 0.044 0.956 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.143 0.857 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.595 -17.488 -7.441 19.182 hybrid contribution 1.346 0.716 0.641 1.654 sum -1.250 -16.772 -6.800 18.141 Atomic orbital electron populations 1.22046 0.93561 1.02698 1.03954 1.21766 0.96398 0.77675 1.03826 1.48520 1.32574 1.10210 1.19556 1.22473 0.96709 0.94515 0.96327 1.19676 1.06103 0.93834 1.00050 1.20027 0.98667 0.91070 0.98973 1.19639 0.98019 0.94920 0.94231 1.18778 0.94968 0.92109 0.96056 1.21009 1.00452 1.13068 1.20337 0.90834 1.25011 0.97606 0.95994 0.94735 1.69909 1.36872 1.21008 1.26326 0.86812 0.85660 0.79251 0.77823 1.20196 1.21385 1.18893 1.20751 0.93847 0.98250 0.94548 1.19760 1.03633 0.89457 1.01776 1.20927 0.95753 0.93595 0.95285 1.77523 1.26470 0.97155 1.13568 0.90781 0.91922 0.90897 0.89552 0.88549 0.80490 0.86252 0.95572 0.95961 0.92703 0.85706 0.86205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 10.07 37.16 0.37 -1.02 16 2 C 0.12 1.09 7.17 -4.04 -0.03 1.06 16 3 N -0.33 -4.67 3.63 -60.81 -0.22 -4.89 16 4 C 0.05 0.77 11.45 -16.61 -0.19 0.58 16 5 C -0.19 -3.42 6.33 -105.19 -0.67 -4.09 16 6 C -0.07 -1.33 9.66 -39.41 -0.38 -1.71 16 7 C -0.07 -1.43 5.03 -105.01 -0.53 -1.96 16 8 C 0.02 0.43 4.12 -29.04 -0.12 0.31 16 9 C -0.51 -14.53 9.65 -34.44 -0.33 -14.86 16 10 H 0.07 2.30 7.98 -52.49 -0.42 1.88 16 11 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 12 N -0.90 -27.78 13.96 55.43 0.77 -27.00 16 13 Si 0.88 21.37 27.47 -169.99 -4.67 16.71 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 17 C -0.05 -1.00 9.51 -39.97 -0.38 -1.38 16 18 C -0.13 -2.29 10.08 -39.41 -0.40 -2.69 16 19 C 0.10 1.84 7.49 -83.06 -0.62 1.22 16 20 N -0.32 -5.61 12.34 33.25 0.41 -5.20 16 21 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 24 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.10 0.56 8.04 -51.93 -0.42 0.14 16 26 H 0.18 1.78 8.06 -52.48 -0.42 1.36 16 27 H 0.12 2.22 8.06 -52.48 -0.42 1.80 16 28 H 0.03 0.62 7.12 -51.93 -0.37 0.25 16 29 H 0.02 0.52 7.50 -51.93 -0.39 0.13 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.13 2.25 8.06 -52.49 -0.42 1.82 16 32 H 0.12 1.90 8.06 -52.48 -0.42 1.48 16 LS Contribution 277.91 15.07 4.19 4.19 Total: -1.00 -33.58 277.91 -7.03 -40.61 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -4.14 Total: -1.74 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: -3.37 Total: -22.68 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.96 Total: -37.09 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.71 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -33.58 -7.03 -40.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261201111.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.090 kcal (2) G-P(sol) polarization free energy of solvation -33.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds