Wall clock time and date at job start Mon Mar 30 2020 02:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47403 * 2 1 4 4 N 1.46499 * 109.47228 * 120.00450 * 2 1 3 5 5 C 1.36020 * 126.30514 * 293.71725 * 4 2 1 6 6 N 1.30136 * 109.97406 * 180.02562 * 5 4 2 7 7 C 1.35823 * 109.48959 * 0.02562 * 6 5 4 8 8 C 1.40045 * 133.42130 * 179.97438 * 7 6 5 9 9 C 1.38195 * 120.31187 * 180.02562 * 8 7 6 10 10 C 1.37941 * 120.82767 * 359.71740 * 9 8 7 11 11 C 1.40657 * 120.15295 * 0.56458 * 10 9 8 12 12 C 1.40997 * 120.34117 * 179.71689 * 11 10 9 13 13 H 1.07998 * 120.00027 * 142.14260 * 12 11 10 14 14 C 1.39978 * 119.99806 * 322.41739 * 12 11 10 15 15 N 1.30836 * 119.99980 * 169.98731 * 14 12 11 16 16 Si 1.86796 * 120.00207 * 349.99195 * 14 12 11 17 17 H 1.48500 * 109.47613 * 86.29244 * 16 14 12 18 18 H 1.48498 * 109.47464 * 206.29763 * 16 14 12 19 19 H 1.48508 * 109.47035 * 326.29496 * 16 14 12 20 20 C 1.37356 * 126.30782 * 113.73965 * 4 2 1 21 21 H 1.09002 * 109.47074 * 299.99574 * 1 2 3 22 22 H 1.08995 * 109.47328 * 59.99934 * 1 2 3 23 23 H 1.09008 * 109.47510 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47049 * 239.99646 * 2 1 3 25 25 H 1.08995 * 109.47409 * 180.02562 * 3 2 1 26 26 H 1.08997 * 109.47426 * 300.00136 * 3 2 1 27 27 H 1.09002 * 109.46658 * 60.00171 * 3 2 1 28 28 H 1.08005 * 125.01401 * 359.97438 * 5 4 2 29 29 H 1.07991 * 119.84515 * 0.04962 * 8 7 6 30 30 H 1.07998 * 119.58098 * 179.97438 * 9 8 7 31 31 H 1.07995 * 119.91934 * 180.27995 * 10 9 8 32 32 H 0.97001 * 120.00427 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.8711 -0.2748 2.4828 6 7 2.4266 -1.1289 3.2923 7 6 2.9667 -2.1480 2.5750 8 6 3.6673 -3.3081 2.9280 9 6 4.1050 -4.1828 1.9517 10 6 3.8567 -3.9349 0.6176 11 6 3.1607 -2.7750 0.2322 12 6 2.9100 -2.5146 -1.1307 13 1 1.9709 -2.0748 -1.4326 14 6 3.8759 -2.8315 -2.0930 15 7 3.5750 -2.7754 -3.3650 16 14 5.5944 -3.3346 -1.5610 17 1 5.6231 -4.7957 -1.2971 18 1 6.5620 -3.0071 -2.6388 19 1 5.9643 -2.6009 -0.3240 20 6 2.7096 -1.8773 1.2248 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 3.1299 1.4424 -0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9562 0.8900 28 1 1.3681 0.6311 2.7875 29 1 3.8662 -3.5204 3.9680 30 1 4.6446 -5.0737 2.2371 31 1 4.2016 -4.6307 -0.1328 32 1 4.2442 -2.9953 -4.0319 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261218292.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:47 Heat of formation + Delta-G solvation = 58.893709 kcal Electronic energy + Delta-G solvation = -16059.542709 eV Core-core repulsion = 13599.265761 eV Total energy + Delta-G solvation = -2460.276948 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.14010 -36.43660 -35.37961 -33.31263 -31.07420 -29.24291 -28.19370 -27.04350 -25.06223 -22.47235 -21.52645 -21.17138 -18.71965 -17.40074 -16.46514 -15.74802 -15.17072 -14.63004 -14.21737 -14.02206 -13.40621 -13.18307 -12.73970 -12.50017 -12.11586 -12.07406 -11.91262 -11.41652 -11.30575 -11.14362 -10.92935 -10.53375 -10.22719 -9.99045 -9.86480 -9.33287 -9.11109 -8.84498 -7.29612 -7.05170 -6.94184 -4.53112 2.14002 2.72052 3.10326 3.19660 3.29470 3.52417 3.73692 3.97659 4.59415 5.03414 5.13242 5.22686 5.34539 5.41569 5.60920 5.69607 5.89242 5.92935 6.11399 6.18668 6.23195 6.38475 6.41159 6.58991 6.71114 6.89524 6.98166 7.27567 7.46742 7.76337 7.79343 7.97410 8.17030 8.20560 8.43655 8.67923 8.91366 10.05050 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.021762 B = 0.013514 C = 0.009296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.309041 B = 2071.364911 C = 3011.448017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.114 3.886 3 C -0.157 4.157 4 N -0.462 5.462 5 C 0.218 3.782 6 N -0.517 5.517 7 C 0.069 3.931 8 C -0.193 4.193 9 C -0.072 4.072 10 C -0.258 4.258 11 C 0.116 3.884 12 C -0.460 4.460 13 H 0.093 0.907 14 C 0.086 3.914 15 N -0.818 5.818 16 Si 0.914 3.086 17 H -0.266 1.266 18 H -0.294 1.294 19 H -0.248 1.248 20 C -0.001 4.001 21 H 0.054 0.946 22 H 0.069 0.931 23 H 0.061 0.939 24 H 0.131 0.869 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.193 0.807 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.110 5.064 2.595 6.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.011 3.989 3 C -0.215 4.215 4 N -0.152 5.152 5 C -0.066 4.066 6 N -0.238 5.238 7 C -0.050 4.050 8 C -0.215 4.215 9 C -0.092 4.092 10 C -0.279 4.279 11 C 0.111 3.889 12 C -0.489 4.489 13 H 0.111 0.889 14 C -0.132 4.132 15 N -0.443 5.443 16 Si 0.741 3.259 17 H -0.191 1.191 18 H -0.222 1.222 19 H -0.172 1.172 20 C -0.109 4.109 21 H 0.074 0.926 22 H 0.088 0.912 23 H 0.081 0.919 24 H 0.148 0.852 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.209 0.791 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.127 0.873 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.109 5.197 3.041 6.380 hybrid contribution 0.612 -0.189 -0.833 1.051 sum -1.496 5.008 2.208 5.674 Atomic orbital electron populations 1.22143 0.94626 1.02795 1.01999 1.21744 0.94322 0.93601 0.89198 1.22116 1.02187 0.95059 1.02112 1.45024 1.44902 1.18548 1.06691 1.24738 1.01887 1.00318 0.79655 1.70352 1.16760 1.04091 1.32599 1.18830 1.01581 0.95525 0.89034 1.19524 1.08678 0.95521 0.97770 1.20394 0.98400 0.97488 0.92948 1.20767 1.13136 0.98887 0.95142 1.16776 0.91252 0.89069 0.91769 1.19305 1.03528 1.36941 0.89129 0.88890 1.26045 1.01399 0.91477 0.94231 1.69625 1.36512 1.36607 1.01538 0.86268 0.80399 0.80338 0.78939 1.19141 1.22167 1.17155 1.19238 1.05262 0.89681 0.96709 0.92646 0.91181 0.91945 0.85152 0.91904 0.91088 0.92599 0.79057 0.88142 0.88122 0.87258 0.90423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.33 37.16 0.35 -1.90 16 2 C 0.11 1.95 3.44 -67.94 -0.23 1.72 16 3 C -0.16 -2.17 9.16 37.15 0.34 -1.83 16 4 N -0.46 -9.38 2.65 -108.31 -0.29 -9.66 16 5 C 0.22 4.14 11.55 -89.78 -1.04 3.10 16 6 N -0.52 -11.53 11.29 -12.07 -0.14 -11.67 16 7 C 0.07 1.67 7.22 -84.73 -0.61 1.06 16 8 C -0.19 -4.43 10.10 -38.92 -0.39 -4.83 16 9 C -0.07 -1.61 9.98 -39.71 -0.40 -2.00 16 10 C -0.26 -6.23 7.18 -38.78 -0.28 -6.51 16 11 C 0.12 2.92 4.98 -106.80 -0.53 2.39 16 12 C -0.46 -11.81 8.23 -37.89 -0.31 -12.12 16 13 H 0.09 2.44 6.15 -52.49 -0.32 2.11 16 14 C 0.09 2.18 5.47 -17.32 -0.09 2.09 16 15 N -0.82 -20.98 13.93 55.55 0.77 -20.20 16 16 Si 0.91 20.74 24.59 -169.99 -4.18 16.56 16 17 H -0.27 -5.85 6.47 56.52 0.37 -5.48 16 18 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.25 -5.90 7.03 56.52 0.40 -5.50 16 20 C 0.00 -0.02 6.81 -83.56 -0.57 -0.58 16 21 H 0.05 0.69 8.06 -51.93 -0.42 0.27 16 22 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 23 H 0.06 1.00 8.14 -51.92 -0.42 0.57 16 24 H 0.13 2.63 4.60 -51.93 -0.24 2.39 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.66 7.70 -51.93 -0.40 0.26 16 28 H 0.19 2.69 7.89 -52.48 -0.41 2.27 16 29 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 30 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 31 H 0.11 2.60 4.95 -52.49 -0.26 2.34 16 32 H 0.29 6.72 8.30 -40.82 -0.34 6.38 16 LS Contribution 262.84 15.07 3.96 3.96 Total: -1.00 -28.91 262.84 -7.40 -36.32 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -3.76 Total: 4.12 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -3.77 Total: -19.43 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.35 Total: -41.54 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.18 Total: 16.56 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -28.91 -7.40 -36.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261218292.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.213 kcal (2) G-P(sol) polarization free energy of solvation -28.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds