Wall clock time and date at job start Mon Mar 30 2020 02:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47403 * 2 1 4 4 N 1.46499 * 109.47228 * 120.00450 * 2 1 3 5 5 C 1.36020 * 126.30514 * 293.71725 * 4 2 1 6 6 N 1.30136 * 109.97406 * 180.02562 * 5 4 2 7 7 C 1.35823 * 109.48959 * 0.02562 * 6 5 4 8 8 C 1.40045 * 133.42130 * 179.97438 * 7 6 5 9 9 C 1.38195 * 120.31187 * 180.02562 * 8 7 6 10 10 C 1.37941 * 120.82767 * 359.71740 * 9 8 7 11 11 C 1.40657 * 120.15295 * 0.56458 * 10 9 8 12 12 C 1.40997 * 120.34117 * 179.71689 * 11 10 9 13 13 H 1.07998 * 120.00027 * 142.14260 * 12 11 10 14 14 C 1.39978 * 119.99806 * 322.41739 * 12 11 10 15 15 N 1.30836 * 119.99980 * 169.98731 * 14 12 11 16 16 Si 1.86796 * 120.00207 * 349.99195 * 14 12 11 17 17 H 1.48500 * 109.47613 * 86.29244 * 16 14 12 18 18 H 1.48498 * 109.47464 * 206.29763 * 16 14 12 19 19 H 1.48508 * 109.47035 * 326.29496 * 16 14 12 20 20 C 1.37356 * 126.30782 * 113.73965 * 4 2 1 21 21 H 1.09002 * 109.47074 * 299.99574 * 1 2 3 22 22 H 1.08995 * 109.47328 * 59.99934 * 1 2 3 23 23 H 1.09008 * 109.47510 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47049 * 239.99646 * 2 1 3 25 25 H 1.08995 * 109.47409 * 180.02562 * 3 2 1 26 26 H 1.08997 * 109.47426 * 300.00136 * 3 2 1 27 27 H 1.09002 * 109.46658 * 60.00171 * 3 2 1 28 28 H 1.08005 * 125.01401 * 359.97438 * 5 4 2 29 29 H 1.07991 * 119.84515 * 0.04962 * 8 7 6 30 30 H 1.07998 * 119.58098 * 179.97438 * 9 8 7 31 31 H 1.07995 * 119.91934 * 180.27995 * 10 9 8 32 32 H 0.97001 * 120.00427 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.8711 -0.2748 2.4828 6 7 2.4266 -1.1289 3.2923 7 6 2.9667 -2.1480 2.5750 8 6 3.6673 -3.3081 2.9280 9 6 4.1050 -4.1828 1.9517 10 6 3.8567 -3.9349 0.6176 11 6 3.1607 -2.7750 0.2322 12 6 2.9100 -2.5146 -1.1307 13 1 1.9709 -2.0748 -1.4326 14 6 3.8759 -2.8315 -2.0930 15 7 3.5750 -2.7754 -3.3650 16 14 5.5944 -3.3346 -1.5610 17 1 5.6231 -4.7957 -1.2971 18 1 6.5620 -3.0071 -2.6388 19 1 5.9643 -2.6009 -0.3240 20 6 2.7096 -1.8773 1.2248 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 3.1299 1.4424 -0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9562 0.8900 28 1 1.3681 0.6311 2.7875 29 1 3.8662 -3.5204 3.9680 30 1 4.6446 -5.0737 2.2371 31 1 4.2016 -4.6307 -0.1328 32 1 4.2442 -2.9953 -4.0319 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261218292.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:47 Heat of formation + Delta-G solvation = 42.782545 kcal Electronic energy + Delta-G solvation = -16060.241342 eV Core-core repulsion = 13599.265761 eV Total energy + Delta-G solvation = -2460.975581 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.78744 -38.15486 -36.89842 -35.13344 -32.74227 -30.92557 -29.91821 -28.16524 -26.90203 -23.99283 -23.19087 -22.91173 -20.36380 -19.20969 -18.07580 -17.39918 -16.92001 -16.20329 -15.95088 -15.50725 -14.95850 -14.86298 -14.18444 -14.05844 -13.78521 -13.49958 -13.20965 -13.09844 -12.93447 -12.63307 -12.42581 -12.07423 -11.95248 -11.73764 -11.64908 -11.09514 -10.82553 -10.57454 -9.04936 -8.89052 -8.79864 -6.46447 0.39073 0.92615 1.27416 1.37085 1.46540 2.02531 2.03939 2.14141 2.73044 3.41947 3.65040 3.79208 3.94795 4.07629 4.31938 4.41113 4.57566 4.66839 4.67805 4.81871 4.83117 4.91729 4.95002 5.07079 5.15962 5.25907 5.28803 5.53990 5.65540 5.91775 6.00599 6.15600 6.33292 6.53718 6.65452 6.77885 7.21786 8.19218 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.021762 B = 0.013514 C = 0.009296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.309041 B = 2071.364911 C = 3011.448017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.107 3.893 3 C -0.148 4.148 4 N -0.465 5.465 5 C 0.242 3.758 6 N -0.544 5.544 7 C 0.046 3.954 8 C -0.195 4.195 9 C -0.076 4.076 10 C -0.269 4.269 11 C 0.095 3.905 12 C -0.476 4.476 13 H 0.074 0.926 14 C 0.056 3.944 15 N -0.850 5.850 16 Si 0.958 3.042 17 H -0.254 1.254 18 H -0.281 1.281 19 H -0.267 1.267 20 C -0.029 4.029 21 H 0.082 0.918 22 H 0.093 0.907 23 H 0.035 0.965 24 H 0.092 0.908 25 H 0.041 0.959 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.247 0.753 29 H 0.120 0.880 30 H 0.136 0.864 31 H 0.109 0.891 32 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.335 6.230 3.925 7.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.005 3.995 3 C -0.206 4.206 4 N -0.153 5.153 5 C -0.043 4.043 6 N -0.265 5.265 7 C -0.073 4.073 8 C -0.216 4.216 9 C -0.096 4.096 10 C -0.291 4.291 11 C 0.091 3.909 12 C -0.506 4.506 13 H 0.091 0.909 14 C -0.158 4.158 15 N -0.477 5.477 16 Si 0.783 3.217 17 H -0.179 1.179 18 H -0.208 1.208 19 H -0.192 1.192 20 C -0.138 4.138 21 H 0.101 0.899 22 H 0.112 0.888 23 H 0.054 0.946 24 H 0.110 0.890 25 H 0.060 0.940 26 H 0.112 0.888 27 H 0.104 0.896 28 H 0.263 0.737 29 H 0.138 0.862 30 H 0.154 0.846 31 H 0.127 0.873 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.342 6.361 4.349 8.053 hybrid contribution 0.587 -0.473 -1.113 1.344 sum -1.755 5.888 3.235 6.944 Atomic orbital electron populations 1.22092 0.92189 1.01856 1.04507 1.21903 0.96198 0.94719 0.86693 1.22083 1.00850 0.92937 1.04739 1.45319 1.44230 1.17615 1.08170 1.25766 0.99369 1.00548 0.78579 1.70371 1.18316 1.04580 1.33263 1.19262 1.02095 0.96531 0.89407 1.19919 1.07631 0.95133 0.98946 1.20731 0.98269 0.98614 0.91982 1.20954 1.13198 0.98717 0.96223 1.16977 0.92136 0.89960 0.91851 1.19270 1.03331 1.38122 0.89883 0.90862 1.26547 1.03568 0.91506 0.94190 1.69643 1.37629 1.38283 1.02135 0.85603 0.77720 0.80418 0.77982 1.17867 1.20781 1.19161 1.19428 1.06430 0.91262 0.96664 0.89907 0.88847 0.94583 0.89007 0.93956 0.88794 0.89623 0.73733 0.86181 0.84637 0.87314 0.89702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.94 9.33 71.98 0.67 -3.27 16 2 C 0.11 3.55 3.44 44.99 0.15 3.71 16 3 C -0.15 -3.74 9.16 71.98 0.66 -3.08 16 4 N -0.46 -18.38 2.65 -496.58 -1.31 -19.69 16 5 C 0.24 8.46 11.55 180.05 2.08 10.54 16 6 N -0.54 -23.21 11.29 -192.09 -2.17 -25.38 16 7 C 0.05 2.19 7.22 39.41 0.28 2.47 16 8 C -0.20 -8.69 10.10 22.70 0.23 -8.46 16 9 C -0.08 -3.30 9.98 22.19 0.22 -3.08 16 10 C -0.27 -13.05 7.18 22.79 0.16 -12.89 16 11 C 0.09 4.89 4.98 -21.28 -0.11 4.79 16 12 C -0.48 -25.43 8.23 23.37 0.19 -25.24 16 13 H 0.07 4.08 6.15 -2.91 -0.02 4.06 16 14 C 0.06 2.92 5.47 85.26 0.47 3.38 16 15 N -0.85 -44.76 13.93 21.83 0.30 -44.45 16 16 Si 0.96 43.03 24.59 68.60 1.69 44.72 16 17 H -0.25 -10.78 6.47 99.48 0.64 -10.14 16 18 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 19 H -0.27 -12.71 7.03 99.48 0.70 -12.01 16 20 C -0.03 -1.39 6.81 39.46 0.27 -1.13 16 21 H 0.08 1.73 8.06 -2.39 -0.02 1.71 16 22 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 23 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 24 H 0.09 3.84 4.60 -2.38 -0.01 3.83 16 25 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.08 1.64 7.70 -2.39 -0.02 1.62 16 28 H 0.25 5.54 7.89 -2.91 -0.02 5.52 16 29 H 0.12 4.77 8.06 -2.92 -0.02 4.74 16 30 H 0.14 4.81 8.06 -2.91 -0.02 4.78 16 31 H 0.11 5.17 4.95 -2.91 -0.01 5.16 16 32 H 0.29 14.03 8.30 -92.71 -0.77 13.26 16 Total: -1.00 -64.27 262.84 4.85 -59.42 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 1.05 Total: 17.63 kcal Atomic # 6 Polarization: -37.52 SS G_CDS: 5.28 Total: -32.24 kcal Atomic # 7 Polarization: -86.35 SS G_CDS: -3.18 Total: -89.53 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.69 Total: 44.72 kcal Total: -64.27 4.85 -59.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261218292.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.203 kcal (2) G-P(sol) polarization free energy of solvation -64.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds