Wall clock time and date at job start Mon Mar 30 2020 02:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53012 * 109.47163 * 2 1 4 4 C 1.50694 * 109.47643 * 239.99661 * 2 1 3 5 5 N 1.30141 * 125.01284 * 264.70208 * 4 2 1 6 6 C 1.35827 * 109.48717 * 179.82858 * 5 4 2 7 7 C 1.40045 * 133.42292 * 180.09674 * 6 5 4 8 8 C 1.38185 * 120.31682 * 180.33347 * 7 6 5 9 9 C 1.37942 * 120.83003 * 0.02562 * 8 7 6 10 10 C 1.40663 * 120.14969 * 0.02562 * 9 8 7 11 11 C 1.40996 * 120.33841 * 179.97438 * 10 9 8 12 12 H 1.07994 * 120.00068 * 154.73593 * 11 10 9 13 13 C 1.39971 * 120.00072 * 334.72340 * 11 10 9 14 14 N 1.30846 * 120.00085 * 342.87620 * 13 11 10 15 15 Si 1.86804 * 120.00072 * 162.86879 * 13 11 10 16 16 H 1.48494 * 109.46980 * 60.00366 * 15 13 11 17 17 H 1.48500 * 109.47172 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47116 * 300.00556 * 15 13 11 19 19 C 1.40089 * 106.92145 * 0.41874 * 6 5 4 20 20 N 1.36018 * 125.01625 * 84.99362 * 4 2 1 21 21 H 0.97004 * 126.30415 * 0.03471 * 20 4 2 22 22 H 1.09005 * 109.47041 * 60.00298 * 1 2 3 23 23 H 1.09002 * 109.47174 * 300.00614 * 1 2 3 24 24 H 1.08990 * 109.47321 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46755 * 119.99243 * 2 1 3 26 26 H 1.08994 * 109.46969 * 59.99746 * 3 2 1 27 27 H 1.08998 * 109.46980 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46228 * 299.99559 * 3 2 1 29 29 H 1.07996 * 119.84326 * 0.30896 * 7 6 5 30 30 H 1.08006 * 119.58452 * 180.02562 * 8 7 6 31 31 H 1.07998 * 119.92734 * 180.02562 * 9 8 7 32 32 H 0.97000 * 119.99803 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2303 5 7 2.3742 -1.9651 -1.2808 6 6 2.7753 -2.2752 -2.5409 7 6 3.2350 -3.4534 -3.1424 8 6 3.5849 -3.4636 -4.4791 9 6 3.4894 -2.3194 -5.2437 10 6 3.0320 -1.1206 -4.6671 11 6 2.9334 0.0514 -5.4448 12 1 2.2366 0.8277 -5.1653 13 6 3.7386 0.2087 -6.5788 14 7 4.7978 -0.5428 -6.7385 15 14 3.3011 1.4915 -7.8643 16 1 3.2961 2.8380 -7.2383 17 1 4.3042 1.4576 -8.9588 18 1 1.9548 1.1981 -8.4182 19 6 2.6716 -1.1034 -3.3017 20 7 2.2010 -0.1336 -2.4505 21 1 2.0223 0.7924 -2.6777 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5137 0.8901 26 1 1.6767 1.9564 0.8899 27 1 3.1300 1.4426 -0.0005 28 1 1.6767 1.9563 -0.8901 29 1 3.3168 -4.3583 -2.5586 30 1 3.9376 -4.3790 -4.9310 31 1 3.7664 -2.3440 -6.2872 32 1 5.3556 -0.4339 -7.5245 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261219606.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:22 Heat of formation + Delta-G solvation = 40.499790 kcal Electronic energy + Delta-G solvation = -15529.099049 eV Core-core repulsion = 13068.024480 eV Total energy + Delta-G solvation = -2461.074568 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.93362 -36.43269 -34.63656 -33.42484 -31.77861 -29.09664 -27.56341 -27.07663 -25.20357 -22.88701 -20.80883 -20.39961 -19.28029 -17.37940 -16.60116 -15.46439 -15.01605 -14.75491 -14.31565 -13.88269 -13.08998 -13.06769 -12.75410 -12.72355 -12.15937 -11.70645 -11.39015 -11.26525 -11.18860 -11.02836 -10.89581 -10.64509 -10.23866 -10.12991 -9.86507 -9.53563 -8.99901 -8.84265 -7.14150 -6.85970 -6.80555 -4.36079 2.36946 2.92242 3.00024 3.02211 3.13604 3.83123 3.90904 3.98408 4.66040 4.72234 5.03552 5.25364 5.50208 5.61724 5.63565 5.82184 5.89308 5.92946 6.06591 6.26905 6.33737 6.51342 6.61503 6.81830 6.97041 7.05522 7.12907 7.38093 7.69927 7.94547 8.14537 8.18668 8.46691 8.50628 8.74516 8.75800 9.11199 10.10165 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.025794 B = 0.008687 C = 0.006849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.264773 B = 3222.390401 C = 4087.126235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.010 4.010 3 C -0.150 4.150 4 C 0.243 3.757 5 N -0.511 5.511 6 C 0.069 3.931 7 C -0.210 4.210 8 C -0.083 4.083 9 C -0.192 4.192 10 C 0.129 3.871 11 C -0.464 4.464 12 H 0.071 0.929 13 C 0.078 3.922 14 N -0.784 5.784 15 Si 0.908 3.092 16 H -0.267 1.267 17 H -0.276 1.276 18 H -0.263 1.263 19 C -0.017 4.017 20 N -0.581 5.581 21 H 0.409 0.591 22 H 0.053 0.947 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.097 0.903 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.123 0.877 32 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.529 4.502 5.674 8.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.030 4.030 3 C -0.208 4.208 4 C -0.024 4.024 5 N -0.234 5.234 6 C -0.049 4.049 7 C -0.232 4.232 8 C -0.103 4.103 9 C -0.214 4.214 10 C 0.125 3.875 11 C -0.494 4.494 12 H 0.089 0.911 13 C -0.141 4.141 14 N -0.408 5.408 15 Si 0.732 3.268 16 H -0.191 1.191 17 H -0.201 1.201 18 H -0.188 1.188 19 C -0.125 4.125 20 N -0.191 5.191 21 H 0.246 0.754 22 H 0.073 0.927 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.115 0.885 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.141 0.859 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.302 3.821 6.156 8.427 hybrid contribution -0.073 1.600 -1.478 2.179 sum -4.376 5.421 4.678 8.392 Atomic orbital electron populations 1.21820 0.93922 1.02598 1.01660 1.19550 0.95740 0.94703 0.93041 1.21878 1.01781 0.95101 1.02055 1.22986 1.02113 0.90117 0.87134 1.70229 1.20601 1.11557 1.21061 1.18740 1.03263 0.94143 0.88704 1.19431 1.13945 0.94854 0.94955 1.20479 0.99236 0.97322 0.93276 1.20883 1.10195 0.90620 0.99750 1.16634 0.90892 0.93867 0.86102 1.19305 1.19260 1.02713 1.08106 0.91114 1.25840 0.93316 0.96703 0.98272 1.69829 1.09705 1.34886 1.26429 0.86372 0.79555 0.80876 0.79968 1.19145 1.20133 1.18773 1.19257 1.10531 0.89099 0.93629 1.42460 1.55885 1.11708 1.09041 0.75435 0.92744 0.92036 0.91930 0.88493 0.91634 0.92060 0.92711 0.88835 0.88714 0.85931 0.90632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.18 37.16 0.34 -1.40 16 2 C -0.01 -0.14 3.39 -91.77 -0.31 -0.45 16 3 C -0.15 -1.77 8.93 37.16 0.33 -1.44 16 4 C 0.24 4.84 6.82 -154.82 -1.06 3.78 16 5 N -0.51 -12.08 11.29 -8.25 -0.09 -12.17 16 6 C 0.07 1.78 7.22 -84.73 -0.61 1.17 16 7 C -0.21 -5.21 10.10 -38.92 -0.39 -5.60 16 8 C -0.08 -2.02 9.98 -39.71 -0.40 -2.42 16 9 C -0.19 -5.06 8.69 -38.78 -0.34 -5.39 16 10 C 0.13 3.45 5.57 -106.80 -0.59 2.86 16 11 C -0.46 -11.95 9.04 -37.89 -0.34 -12.29 16 12 H 0.07 1.72 7.90 -52.49 -0.41 1.30 16 13 C 0.08 1.90 5.15 -17.32 -0.09 1.81 16 14 N -0.78 -19.88 10.97 55.55 0.61 -19.27 16 15 Si 0.91 18.13 29.59 -169.99 -5.03 13.10 16 16 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 17 H -0.28 -5.39 7.11 56.52 0.40 -4.98 16 18 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 19 C -0.02 -0.43 7.03 -83.56 -0.59 -1.02 16 20 N -0.58 -12.25 5.94 -7.68 -0.05 -12.29 16 21 H 0.41 7.49 8.10 -40.82 -0.33 7.16 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.63 7.37 -51.93 -0.38 0.24 16 29 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 30 H 0.09 2.01 8.06 -52.48 -0.42 1.59 16 31 H 0.12 3.26 6.18 -52.49 -0.32 2.94 16 32 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 LS Contribution 273.01 15.07 4.11 4.11 Total: -1.00 -29.73 273.01 -8.46 -38.19 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -3.97 Total: 8.75 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: -4.05 Total: -20.41 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: 0.47 Total: -43.74 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.73 -8.46 -38.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261219606.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.689 kcal (2) G-P(sol) polarization free energy of solvation -29.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds