Wall clock time and date at job start Mon Mar 30 2020 02:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53012 * 109.47163 * 2 1 4 4 C 1.50694 * 109.47643 * 239.99661 * 2 1 3 5 5 N 1.30141 * 125.01284 * 264.70208 * 4 2 1 6 6 C 1.35827 * 109.48717 * 179.82858 * 5 4 2 7 7 C 1.40045 * 133.42292 * 180.09674 * 6 5 4 8 8 C 1.38185 * 120.31682 * 180.33347 * 7 6 5 9 9 C 1.37942 * 120.83003 * 0.02562 * 8 7 6 10 10 C 1.40663 * 120.14969 * 0.02562 * 9 8 7 11 11 C 1.40996 * 120.33841 * 179.97438 * 10 9 8 12 12 H 1.07994 * 120.00068 * 154.73593 * 11 10 9 13 13 C 1.39971 * 120.00072 * 334.72340 * 11 10 9 14 14 N 1.30846 * 120.00085 * 342.87620 * 13 11 10 15 15 Si 1.86804 * 120.00072 * 162.86879 * 13 11 10 16 16 H 1.48494 * 109.46980 * 60.00366 * 15 13 11 17 17 H 1.48500 * 109.47172 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47116 * 300.00556 * 15 13 11 19 19 C 1.40089 * 106.92145 * 0.41874 * 6 5 4 20 20 N 1.36018 * 125.01625 * 84.99362 * 4 2 1 21 21 H 0.97004 * 126.30415 * 0.03471 * 20 4 2 22 22 H 1.09005 * 109.47041 * 60.00298 * 1 2 3 23 23 H 1.09002 * 109.47174 * 300.00614 * 1 2 3 24 24 H 1.08990 * 109.47321 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46755 * 119.99243 * 2 1 3 26 26 H 1.08994 * 109.46969 * 59.99746 * 3 2 1 27 27 H 1.08998 * 109.46980 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46228 * 299.99559 * 3 2 1 29 29 H 1.07996 * 119.84326 * 0.30896 * 7 6 5 30 30 H 1.08006 * 119.58452 * 180.02562 * 8 7 6 31 31 H 1.07998 * 119.92734 * 180.02562 * 9 8 7 32 32 H 0.97000 * 119.99803 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2303 5 7 2.3742 -1.9651 -1.2808 6 6 2.7753 -2.2752 -2.5409 7 6 3.2350 -3.4534 -3.1424 8 6 3.5849 -3.4636 -4.4791 9 6 3.4894 -2.3194 -5.2437 10 6 3.0320 -1.1206 -4.6671 11 6 2.9334 0.0514 -5.4448 12 1 2.2366 0.8277 -5.1653 13 6 3.7386 0.2087 -6.5788 14 7 4.7978 -0.5428 -6.7385 15 14 3.3011 1.4915 -7.8643 16 1 3.2961 2.8380 -7.2383 17 1 4.3042 1.4576 -8.9588 18 1 1.9548 1.1981 -8.4182 19 6 2.6716 -1.1034 -3.3017 20 7 2.2010 -0.1336 -2.4505 21 1 2.0223 0.7924 -2.6777 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5137 0.8901 26 1 1.6767 1.9564 0.8899 27 1 3.1300 1.4426 -0.0005 28 1 1.6767 1.9563 -0.8901 29 1 3.3168 -4.3583 -2.5586 30 1 3.9376 -4.3790 -4.9310 31 1 3.7664 -2.3440 -6.2872 32 1 5.3556 -0.4339 -7.5245 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261219606.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:22 Heat of formation + Delta-G solvation = 23.300681 kcal Electronic energy + Delta-G solvation = -15529.844858 eV Core-core repulsion = 13068.024480 eV Total energy + Delta-G solvation = -2461.820378 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.68830 -38.17374 -36.05856 -35.17463 -33.59004 -30.98246 -29.34474 -28.03896 -27.11364 -24.34944 -22.67461 -22.23617 -20.75467 -19.21708 -18.36588 -17.28399 -16.66262 -16.25018 -15.91891 -15.18010 -14.87624 -14.66549 -14.50346 -13.91245 -13.47099 -13.21954 -13.01597 -12.88821 -12.42222 -12.29036 -12.24565 -12.15755 -11.88051 -11.83668 -11.73089 -11.35632 -10.83540 -10.68092 -9.03833 -8.75859 -8.65731 -6.32250 0.56032 1.12255 1.36397 1.44437 1.49602 2.11038 2.18347 2.35276 2.79240 3.33414 3.66180 3.93567 4.16557 4.21103 4.42982 4.64232 4.74477 4.77018 4.89036 4.93343 4.94085 5.07986 5.12806 5.20612 5.25988 5.30835 5.35659 5.48883 5.78883 6.03345 6.19048 6.27289 6.58311 6.73863 6.84291 6.89126 7.30148 8.27946 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.025794 B = 0.008687 C = 0.006849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.264773 B = 3222.390401 C = 4087.126235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.011 4.011 3 C -0.146 4.146 4 C 0.265 3.735 5 N -0.545 5.545 6 C 0.047 3.953 7 C -0.227 4.227 8 C -0.083 4.083 9 C -0.220 4.220 10 C 0.107 3.893 11 C -0.490 4.490 12 H 0.078 0.922 13 C 0.037 3.963 14 N -0.814 5.814 15 Si 0.984 3.016 16 H -0.257 1.257 17 H -0.267 1.267 18 H -0.261 1.261 19 C -0.045 4.045 20 N -0.575 5.575 21 H 0.421 0.579 22 H 0.052 0.948 23 H 0.099 0.901 24 H 0.046 0.954 25 H 0.106 0.894 26 H 0.101 0.899 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.107 0.893 30 H 0.121 0.879 31 H 0.112 0.888 32 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.428 6.449 6.364 10.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.031 4.031 3 C -0.204 4.204 4 C -0.002 4.002 5 N -0.268 5.268 6 C -0.071 4.071 7 C -0.249 4.249 8 C -0.103 4.103 9 C -0.242 4.242 10 C 0.102 3.898 11 C -0.519 4.519 12 H 0.096 0.904 13 C -0.180 4.180 14 N -0.439 5.439 15 Si 0.805 3.195 16 H -0.181 1.181 17 H -0.191 1.191 18 H -0.185 1.185 19 C -0.154 4.154 20 N -0.185 5.185 21 H 0.260 0.740 22 H 0.071 0.929 23 H 0.118 0.882 24 H 0.065 0.935 25 H 0.124 0.876 26 H 0.120 0.880 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.125 0.875 30 H 0.139 0.861 31 H 0.130 0.870 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.201 5.772 6.854 10.361 hybrid contribution 0.199 0.996 -1.580 1.878 sum -5.002 6.768 5.274 9.932 Atomic orbital electron populations 1.21803 0.91953 1.02207 1.03494 1.19900 0.97191 0.95746 0.90260 1.21885 1.01070 0.93392 1.04029 1.24201 0.98540 0.89333 0.88135 1.70263 1.22756 1.13580 1.20235 1.19157 1.03433 0.94673 0.89843 1.19696 1.14369 0.95435 0.95357 1.20713 0.98570 0.97828 0.93184 1.20917 1.12077 0.91607 0.99590 1.16986 0.91200 0.94508 0.87072 1.19595 1.20092 1.02850 1.09344 0.90426 1.26758 0.92610 0.98831 0.99751 1.69889 1.10467 1.36266 1.27285 0.85217 0.79260 0.78078 0.76983 1.18124 1.19143 1.18543 1.19350 1.11909 0.90355 0.93784 1.42448 1.55422 1.11851 1.08817 0.73990 0.92912 0.88219 0.93469 0.87612 0.88039 0.93211 0.92412 0.87529 0.86116 0.87043 0.89812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.18 71.98 0.66 -2.28 16 2 C -0.01 -0.28 3.39 -11.54 -0.04 -0.32 16 3 C -0.15 -2.96 8.93 71.99 0.64 -2.32 16 4 C 0.26 10.35 6.82 137.92 0.94 11.29 16 5 N -0.54 -25.82 11.29 -180.02 -2.03 -27.86 16 6 C 0.05 2.45 7.22 39.41 0.28 2.73 16 7 C -0.23 -11.50 10.10 22.70 0.23 -11.28 16 8 C -0.08 -4.14 9.98 22.19 0.22 -3.92 16 9 C -0.22 -11.96 8.69 22.79 0.20 -11.76 16 10 C 0.11 5.86 5.57 -21.28 -0.12 5.74 16 11 C -0.49 -25.57 9.04 23.37 0.21 -25.35 16 12 H 0.08 3.78 7.90 -2.91 -0.02 3.76 16 13 C 0.04 1.81 5.15 85.26 0.44 2.25 16 14 N -0.81 -41.83 10.97 21.83 0.24 -41.59 16 15 Si 0.98 36.60 29.59 68.60 2.03 38.63 16 16 H -0.26 -9.11 7.11 99.48 0.71 -8.41 16 17 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 18 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 19 C -0.05 -2.35 7.03 39.46 0.28 -2.08 16 20 N -0.57 -24.11 5.94 -178.21 -1.06 -25.17 16 21 H 0.42 15.13 8.10 -92.71 -0.75 14.38 16 22 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 23 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 26 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 1.14 7.37 -2.39 -0.02 1.12 16 29 H 0.11 4.96 8.06 -2.91 -0.02 4.93 16 30 H 0.12 5.18 8.06 -2.91 -0.02 5.16 16 31 H 0.11 6.18 6.18 -2.91 -0.02 6.16 16 32 H 0.29 13.46 8.30 -92.71 -0.77 12.69 16 Total: -1.00 -65.81 273.01 3.51 -62.30 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: 0.38 Total: 30.98 kcal Atomic # 6 Polarization: -41.25 SS G_CDS: 3.95 Total: -37.31 kcal Atomic # 7 Polarization: -91.76 SS G_CDS: -2.85 Total: -94.61 kcal Atomic # 14 Polarization: 36.60 SS G_CDS: 2.03 Total: 38.63 kcal Total: -65.81 3.51 -62.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261219606.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.603 kcal (2) G-P(sol) polarization free energy of solvation -65.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds