Wall clock time and date at job start Mon Mar 30 2020 02:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46980 * 2 1 4 4 C 1.53005 * 109.47007 * 119.99643 * 2 1 3 5 5 H 1.08992 * 109.47402 * 179.97438 * 4 2 1 6 6 C 1.50693 * 109.47106 * 59.96037 * 4 2 1 7 7 H 1.08008 * 120.00122 * 243.76303 * 6 4 2 8 8 C 1.37881 * 120.00232 * 63.76085 * 6 4 2 9 9 N 1.31510 * 119.99467 * 6.51491 * 8 6 4 10 10 Si 1.86798 * 120.00296 * 186.50766 * 8 6 4 11 11 H 1.48506 * 109.46767 * 90.00381 * 10 8 6 12 12 H 1.48502 * 109.47059 * 209.99956 * 10 8 6 13 13 H 1.48501 * 109.47170 * 330.00532 * 10 8 6 14 14 C 1.50701 * 109.46774 * 299.96199 * 4 2 1 15 15 C 1.38539 * 120.47492 * 67.93193 * 14 4 2 16 16 C 1.38655 * 118.50911 * 179.97438 * 15 14 4 17 17 C 1.38508 * 119.37892 * 0.02562 * 16 15 14 18 18 N 1.31568 * 120.91320 * 359.73362 * 17 16 15 19 19 C 1.32817 * 121.61725 * 0.53308 * 18 17 16 20 20 C 1.43203 * 119.73279 * 179.74985 * 19 18 17 21 21 N 4.43474 * 140.09066 * 75.86003 * 2 1 3 22 22 H 1.09009 * 109.46826 * 71.00319 * 1 2 3 23 23 H 1.08999 * 109.46913 * 191.00127 * 1 2 3 24 24 H 1.08994 * 109.47093 * 311.00364 * 1 2 3 25 25 H 1.08998 * 109.47448 * 239.99305 * 2 1 3 26 26 H 1.09000 * 109.46994 * 184.28003 * 3 2 1 27 27 H 1.09000 * 109.47005 * 304.27512 * 3 2 1 28 28 H 1.08999 * 109.47426 * 64.28234 * 3 2 1 29 29 H 0.97003 * 119.99954 * 179.97438 * 9 8 6 30 30 H 1.07997 * 120.74548 * 359.95517 * 15 14 4 31 31 H 1.07996 * 120.31290 * 179.97438 * 16 15 14 32 32 H 1.08003 * 119.54823 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1299 -0.7216 1.2492 6 6 1.5369 -2.1417 1.2499 7 1 0.8668 -2.4769 2.0278 8 6 1.9319 -3.0134 0.2573 9 7 2.8450 -2.6463 -0.6150 10 14 1.1702 -4.7158 0.1518 11 1 -0.0345 -4.6661 -0.7151 12 1 2.1565 -5.6644 -0.4251 13 1 0.7832 -5.1701 1.5116 14 6 1.5384 -0.0101 2.4797 15 6 0.1893 -0.0178 2.7947 16 6 -0.2274 0.6491 3.9367 17 6 0.7087 1.2994 4.7236 18 7 1.9851 1.2876 4.4046 19 6 2.4252 0.6652 3.3170 20 6 3.8228 0.6826 3.0054 21 7 4.9317 0.6951 2.7590 22 1 -0.3633 0.3346 -0.9718 23 1 -0.3633 -1.0088 0.1961 24 1 -0.3633 0.6742 0.7755 25 1 1.8934 -0.5139 -0.8899 26 1 3.1273 1.4434 -0.0767 27 1 1.6154 1.9779 -0.8492 28 1 1.7407 1.9337 0.9258 29 1 3.1232 -3.2596 -1.3131 30 1 -0.5218 -0.5315 2.1648 31 1 -1.2723 0.6621 4.2096 32 1 0.3870 1.8201 5.6135 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261231072.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:18 Heat of formation + Delta-G solvation = 52.518355 kcal Electronic energy + Delta-G solvation = -15961.713057 eV Core-core repulsion = 13501.159653 eV Total energy + Delta-G solvation = -2460.553404 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.13976 -36.38359 -35.88771 -32.29115 -31.84351 -31.07106 -27.39666 -26.51150 -24.09722 -23.87799 -21.70248 -19.31478 -18.37250 -16.59082 -16.09889 -15.15753 -14.75582 -14.35345 -14.00018 -13.52717 -12.99566 -12.78390 -12.65636 -12.54123 -12.27193 -12.15052 -11.85502 -11.31245 -11.20860 -11.00677 -10.84007 -10.30132 -10.10300 -9.94833 -9.77078 -9.29546 -9.16620 -8.92489 -8.49862 -8.27457 -6.16577 -4.21800 1.09401 1.73568 3.16402 3.21857 3.30422 3.31646 3.38490 4.09539 4.29608 4.44280 5.08551 5.15410 5.31353 5.39369 5.55428 5.74270 5.95084 6.02731 6.12699 6.22966 6.35285 6.53013 6.56610 6.63693 6.71133 6.78470 7.00326 7.23884 7.25132 7.55087 7.63829 7.83026 7.97850 8.14190 8.18491 8.78527 9.41888 10.91242 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.023777 B = 0.010135 C = 0.009510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.330763 B = 2761.909732 C = 2943.623792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.082 4.082 3 C -0.147 4.147 4 C 0.077 3.923 5 H 0.047 0.953 6 C -0.516 4.516 7 H 0.061 0.939 8 C 0.069 3.931 9 N -0.880 5.880 10 Si 0.890 3.110 11 H -0.278 1.278 12 H -0.286 1.286 13 H -0.273 1.273 14 C -0.021 4.021 15 C -0.074 4.074 16 C -0.154 4.154 17 C 0.075 3.925 18 N -0.459 5.459 19 C 0.159 3.841 20 C 0.284 3.716 21 N -0.411 5.411 22 H 0.030 0.970 23 H 0.070 0.930 24 H 0.040 0.960 25 H 0.095 0.905 26 H 0.044 0.956 27 H 0.040 0.960 28 H 0.037 0.963 29 H 0.264 0.736 30 H 0.153 0.847 31 H 0.134 0.866 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.107 5.520 4.681 10.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.101 4.101 3 C -0.205 4.205 4 C 0.058 3.942 5 H 0.065 0.935 6 C -0.553 4.553 7 H 0.080 0.920 8 C -0.134 4.134 9 N -0.517 5.517 10 Si 0.718 3.282 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.198 1.198 14 C -0.025 4.025 15 C -0.099 4.099 16 C -0.175 4.175 17 C -0.086 4.086 18 N -0.169 5.169 19 C 0.022 3.978 20 C -0.033 4.033 21 N -0.088 5.088 22 H 0.049 0.951 23 H 0.089 0.911 24 H 0.058 0.942 25 H 0.113 0.887 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.170 0.830 31 H 0.151 0.849 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -5.665 5.907 4.680 9.428 hybrid contribution -1.415 -1.377 -0.515 2.040 sum -7.080 4.531 4.165 9.381 Atomic orbital electron populations 1.22040 0.97176 1.01778 0.98823 1.21076 0.94388 0.92843 1.01826 1.21952 1.00467 0.98373 0.99676 1.18079 0.97311 0.93268 0.85591 0.93543 1.20951 1.29440 0.93875 1.11079 0.92050 1.24927 0.94463 0.98274 0.95737 1.69929 1.28592 1.36466 1.16746 0.86613 0.79167 0.84009 0.78446 1.20421 1.21208 1.19773 1.21601 0.92996 0.91098 0.96840 1.21828 0.95963 0.96600 0.95551 1.22357 1.01048 0.98291 0.95785 1.22464 0.87487 0.98928 0.99713 1.67366 1.17964 1.16442 1.15099 1.16405 0.86614 1.00654 0.94077 1.24875 0.91765 0.93463 0.93151 1.81125 1.11582 1.08046 1.08073 0.95079 0.91140 0.94157 0.88666 0.93677 0.94100 0.94367 0.92633 0.82993 0.84857 0.82703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 7.53 37.16 0.28 -2.29 16 2 C -0.08 -1.74 2.58 -90.62 -0.23 -1.97 16 3 C -0.15 -2.80 9.00 37.16 0.33 -2.46 16 4 C 0.08 1.74 1.63 -92.92 -0.15 1.59 16 5 H 0.05 1.22 6.51 -51.93 -0.34 0.88 16 6 C -0.52 -12.66 6.63 -34.44 -0.23 -12.88 16 7 H 0.06 1.47 7.33 -52.48 -0.38 1.09 16 8 C 0.07 1.77 5.24 -17.82 -0.09 1.68 16 9 N -0.88 -23.80 11.90 55.43 0.66 -23.14 16 10 Si 0.89 19.92 29.54 -169.99 -5.02 14.90 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 12 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 14 C -0.02 -0.41 3.48 -104.07 -0.36 -0.77 16 15 C -0.07 -1.20 6.88 -39.32 -0.27 -1.47 16 16 C -0.15 -2.02 10.11 -39.33 -0.40 -2.42 16 17 C 0.07 1.03 11.18 -17.57 -0.20 0.83 16 18 N -0.46 -7.99 10.28 -11.16 -0.11 -8.11 16 19 C 0.16 3.09 6.40 -85.08 -0.54 2.55 16 20 C 0.28 6.01 13.76 -22.47 -0.31 5.70 16 21 N -0.41 -9.12 18.54 41.84 0.78 -8.34 16 22 H 0.03 0.52 8.14 -51.92 -0.42 0.10 16 23 H 0.07 1.35 6.36 -51.93 -0.33 1.02 16 24 H 0.04 0.65 5.73 -51.93 -0.30 0.35 16 25 H 0.10 2.31 6.64 -51.93 -0.34 1.96 16 26 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.04 0.69 6.92 -51.93 -0.36 0.33 16 29 H 0.26 6.86 8.31 -40.82 -0.34 6.53 16 30 H 0.15 2.39 5.68 -52.49 -0.30 2.09 16 31 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.16 1.54 8.06 -52.48 -0.42 1.11 16 LS Contribution 270.02 15.07 4.07 4.07 Total: -1.00 -27.60 270.02 -5.41 -33.00 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -3.60 Total: -0.47 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -2.17 Total: -11.91 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 1.32 Total: -39.59 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.60 -5.41 -33.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261231072.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.521 kcal (2) G-P(sol) polarization free energy of solvation -27.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds