Wall clock time and date at job start Mon Mar 30 2020 02:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46980 * 2 1 4 4 C 1.53005 * 109.47007 * 119.99643 * 2 1 3 5 5 H 1.08992 * 109.47402 * 179.97438 * 4 2 1 6 6 C 1.50693 * 109.47106 * 59.96037 * 4 2 1 7 7 H 1.08008 * 120.00122 * 243.76303 * 6 4 2 8 8 C 1.37881 * 120.00232 * 63.76085 * 6 4 2 9 9 N 1.31510 * 119.99467 * 6.51491 * 8 6 4 10 10 Si 1.86798 * 120.00296 * 186.50766 * 8 6 4 11 11 H 1.48506 * 109.46767 * 90.00381 * 10 8 6 12 12 H 1.48502 * 109.47059 * 209.99956 * 10 8 6 13 13 H 1.48501 * 109.47170 * 330.00532 * 10 8 6 14 14 C 1.50701 * 109.46774 * 299.96199 * 4 2 1 15 15 C 1.38539 * 120.47492 * 67.93193 * 14 4 2 16 16 C 1.38655 * 118.50911 * 179.97438 * 15 14 4 17 17 C 1.38508 * 119.37892 * 0.02562 * 16 15 14 18 18 N 1.31568 * 120.91320 * 359.73362 * 17 16 15 19 19 C 1.32817 * 121.61725 * 0.53308 * 18 17 16 20 20 C 1.43203 * 119.73279 * 179.74985 * 19 18 17 21 21 N 4.43474 * 140.09066 * 75.86003 * 2 1 3 22 22 H 1.09009 * 109.46826 * 71.00319 * 1 2 3 23 23 H 1.08999 * 109.46913 * 191.00127 * 1 2 3 24 24 H 1.08994 * 109.47093 * 311.00364 * 1 2 3 25 25 H 1.08998 * 109.47448 * 239.99305 * 2 1 3 26 26 H 1.09000 * 109.46994 * 184.28003 * 3 2 1 27 27 H 1.09000 * 109.47005 * 304.27512 * 3 2 1 28 28 H 1.08999 * 109.47426 * 64.28234 * 3 2 1 29 29 H 0.97003 * 119.99954 * 179.97438 * 9 8 6 30 30 H 1.07997 * 120.74548 * 359.95517 * 15 14 4 31 31 H 1.07996 * 120.31290 * 179.97438 * 16 15 14 32 32 H 1.08003 * 119.54823 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1299 -0.7216 1.2492 6 6 1.5369 -2.1417 1.2499 7 1 0.8668 -2.4769 2.0278 8 6 1.9319 -3.0134 0.2573 9 7 2.8450 -2.6463 -0.6150 10 14 1.1702 -4.7158 0.1518 11 1 -0.0345 -4.6661 -0.7151 12 1 2.1565 -5.6644 -0.4251 13 1 0.7832 -5.1701 1.5116 14 6 1.5384 -0.0101 2.4797 15 6 0.1893 -0.0178 2.7947 16 6 -0.2274 0.6491 3.9367 17 6 0.7087 1.2994 4.7236 18 7 1.9851 1.2876 4.4046 19 6 2.4252 0.6652 3.3170 20 6 3.8228 0.6826 3.0054 21 7 4.9317 0.6951 2.7590 22 1 -0.3633 0.3346 -0.9718 23 1 -0.3633 -1.0088 0.1961 24 1 -0.3633 0.6742 0.7755 25 1 1.8934 -0.5139 -0.8899 26 1 3.1273 1.4434 -0.0767 27 1 1.6154 1.9779 -0.8492 28 1 1.7407 1.9337 0.9258 29 1 3.1232 -3.2596 -1.3131 30 1 -0.5218 -0.5315 2.1648 31 1 -1.2723 0.6621 4.2096 32 1 0.3870 1.8201 5.6135 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261231072.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:18 Heat of formation + Delta-G solvation = 36.618940 kcal Electronic energy + Delta-G solvation = -15962.402508 eV Core-core repulsion = 13501.159653 eV Total energy + Delta-G solvation = -2461.242855 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.47839 -37.94292 -37.53201 -34.15458 -33.15052 -32.46953 -29.11924 -27.98806 -25.63332 -25.37581 -23.14769 -20.86751 -19.84115 -18.31566 -17.53667 -16.75448 -16.15181 -15.87662 -15.52300 -15.02338 -14.52623 -14.46773 -14.17892 -14.04721 -13.74826 -13.71179 -13.44274 -12.94377 -12.75576 -12.69808 -12.48627 -11.92757 -11.82756 -11.57377 -11.32255 -10.97922 -10.51763 -10.37793 -10.30348 -9.69762 -8.10638 -6.20640 -0.23384 0.48729 1.43779 1.46343 1.54130 1.56952 1.90900 2.44399 2.66883 3.06280 3.21721 3.86368 4.12586 4.19794 4.27677 4.40747 4.47485 4.55978 4.62348 4.83360 4.93405 5.07053 5.13236 5.22542 5.29089 5.34670 5.58375 5.67784 5.73816 5.77371 5.90394 6.04644 6.28591 6.38694 6.86638 6.94132 7.45939 8.96794 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.023777 B = 0.010135 C = 0.009510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.330763 B = 2761.909732 C = 2943.623792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.083 4.083 3 C -0.137 4.137 4 C 0.079 3.921 5 H -0.003 1.003 6 C -0.514 4.514 7 H 0.067 0.933 8 C 0.019 3.981 9 N -0.918 5.918 10 Si 0.947 3.053 11 H -0.268 1.268 12 H -0.296 1.296 13 H -0.265 1.265 14 C -0.038 4.038 15 C -0.083 4.083 16 C -0.122 4.122 17 C 0.086 3.914 18 N -0.474 5.474 19 C 0.133 3.867 20 C 0.290 3.710 21 N -0.453 5.453 22 H 0.043 0.957 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.054 0.946 26 H 0.020 0.980 27 H 0.062 0.938 28 H 0.048 0.952 29 H 0.259 0.741 30 H 0.160 0.840 31 H 0.187 0.813 32 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.712 6.347 6.600 14.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.102 4.102 3 C -0.194 4.194 4 C 0.059 3.941 5 H 0.016 0.984 6 C -0.551 4.551 7 H 0.086 0.914 8 C -0.180 4.180 9 N -0.557 5.557 10 Si 0.773 3.227 11 H -0.193 1.193 12 H -0.223 1.223 13 H -0.189 1.189 14 C -0.043 4.043 15 C -0.108 4.108 16 C -0.142 4.142 17 C -0.076 4.076 18 N -0.185 5.185 19 C -0.002 4.002 20 C -0.025 4.025 21 N -0.130 5.130 22 H 0.062 0.938 23 H 0.078 0.922 24 H 0.085 0.915 25 H 0.073 0.927 26 H 0.039 0.961 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.177 0.823 31 H 0.204 0.796 32 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -9.272 6.735 6.603 13.226 hybrid contribution -0.379 -1.575 -0.991 1.899 sum -9.651 5.161 5.612 12.299 Atomic orbital electron populations 1.21924 0.94467 1.01850 1.00525 1.20953 0.96638 0.93263 0.99335 1.21828 0.98945 0.97504 1.01108 1.17850 0.94460 0.93425 0.88335 0.98446 1.21299 1.28499 0.94934 1.10410 0.91439 1.25663 0.94948 1.01646 0.95765 1.70092 1.30425 1.37496 1.17669 0.85711 0.78332 0.79953 0.78677 1.19330 1.22302 1.18921 1.21288 0.94726 0.92321 0.95963 1.21981 0.94273 0.97371 0.97188 1.22871 1.03469 0.94742 0.93083 1.23392 0.86056 0.97536 1.00601 1.67416 1.20233 1.16594 1.14215 1.16306 0.85454 1.02809 0.95612 1.25497 0.92507 0.92361 0.92162 1.81083 1.12886 1.09673 1.09390 0.93823 0.92246 0.91509 0.92724 0.96084 0.91940 0.93256 0.93186 0.82304 0.79564 0.77936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 7.53 71.98 0.54 -3.99 16 2 C -0.08 -3.55 2.58 -10.79 -0.03 -3.58 16 3 C -0.14 -5.22 9.00 71.98 0.65 -4.57 16 4 C 0.08 3.66 1.63 -12.29 -0.02 3.64 16 5 H 0.00 -0.14 6.51 -2.39 -0.02 -0.16 16 6 C -0.51 -25.49 6.63 25.60 0.17 -25.32 16 7 H 0.07 3.18 7.33 -2.91 -0.02 3.16 16 8 C 0.02 1.00 5.24 84.66 0.44 1.44 16 9 N -0.92 -52.01 11.90 21.45 0.26 -51.75 16 10 Si 0.95 41.24 29.54 68.60 2.03 43.27 16 11 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 12 H -0.30 -13.31 7.11 99.48 0.71 -12.60 16 13 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 14 C -0.04 -1.45 3.48 -19.51 -0.07 -1.52 16 15 C -0.08 -2.39 6.88 22.44 0.15 -2.24 16 16 C -0.12 -2.44 10.11 22.43 0.23 -2.22 16 17 C 0.09 1.89 11.18 84.80 0.95 2.83 16 18 N -0.47 -15.29 10.28 -189.21 -1.94 -17.23 16 19 C 0.13 5.11 6.40 40.52 0.26 5.37 16 20 C 0.29 12.79 13.76 88.33 1.22 14.01 16 21 N -0.45 -21.24 18.54 19.00 0.35 -20.89 16 22 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 23 H 0.06 2.18 6.36 -2.39 -0.02 2.17 16 24 H 0.07 1.94 5.73 -2.39 -0.01 1.92 16 25 H 0.05 2.78 6.64 -2.39 -0.02 2.76 16 26 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.05 1.75 6.92 -2.39 -0.02 1.74 16 29 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 30 H 0.16 4.38 5.68 -2.91 -0.02 4.36 16 31 H 0.19 1.88 8.06 -2.91 -0.02 1.86 16 32 H 0.20 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -64.47 270.02 6.31 -58.16 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: 1.13 Total: 4.59 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: 4.49 Total: -16.15 kcal Atomic # 7 Polarization: -88.54 SS G_CDS: -1.34 Total: -89.88 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -64.47 6.31 -58.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261231072.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.779 kcal (2) G-P(sol) polarization free energy of solvation -64.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds