Wall clock time and date at job start Mon Mar 30 2020 03:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36039 * 126.34886 * 2 1 4 4 N 1.30110 * 110.09997 * 179.81385 * 3 2 1 5 5 C 1.35788 * 109.63926 * 0.44710 * 4 3 2 6 6 C 1.39743 * 133.59812 * 179.72436 * 5 4 3 7 7 C 1.36607 * 119.88751 * 180.02562 * 6 5 4 8 8 C 1.38776 * 120.66415 * 0.02562 * 7 6 5 9 9 C 1.37856 * 120.45411 * 359.97426 * 8 7 6 10 10 C 1.50701 * 120.15309 * 180.02562 * 9 8 7 11 11 C 1.53000 * 109.47163 * 264.97407 * 10 9 8 12 12 C 1.50696 * 109.46773 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00591 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99971 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99890 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00090 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47116 * 60.00509 * 16 14 12 18 18 H 1.48504 * 109.47242 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47597 * 300.00369 * 16 14 12 20 20 C 1.38051 * 126.34991 * 180.30318 * 2 1 3 21 21 H 1.09002 * 109.47391 * 269.69437 * 1 2 3 22 22 H 1.09001 * 109.46813 * 149.69493 * 1 2 3 23 23 H 1.09004 * 109.47041 * 29.69620 * 1 2 3 24 24 H 1.07997 * 124.95142 * 359.97027 * 3 2 1 25 25 H 1.08005 * 120.06097 * 0.02562 * 6 5 4 26 26 H 1.07999 * 119.66511 * 179.97438 * 7 6 5 27 27 H 1.08001 * 119.77200 * 179.97438 * 8 7 6 28 28 H 1.08998 * 109.47185 * 24.97807 * 10 9 8 29 29 H 1.08995 * 109.46812 * 144.97349 * 10 9 8 30 30 H 1.08994 * 109.47032 * 299.99927 * 11 10 9 31 31 H 1.08995 * 109.47304 * 60.00244 * 11 10 9 32 32 H 0.97000 * 120.00327 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2713 1.0957 0.0000 4 7 3.5204 0.7316 0.0040 5 6 3.6007 -0.6239 -0.0032 6 6 4.6680 -1.5259 -0.0080 7 6 4.4233 -2.8699 -0.0156 8 6 3.1221 -3.3524 -0.0192 9 6 2.0538 -2.4811 -0.0146 10 6 0.6436 -3.0124 -0.0180 11 6 0.1222 -3.0659 -1.4554 12 6 -1.2882 -3.5967 -1.4587 13 1 -1.7649 -3.8691 -0.5286 14 6 -1.9702 -3.7346 -2.6491 15 7 -1.3896 -3.4035 -3.7817 16 14 -3.7182 -4.3932 -2.6532 17 1 -4.5857 -3.4997 -1.8443 18 1 -4.2244 -4.4451 -4.0483 19 1 -3.7341 -5.7589 -2.0703 20 6 2.2832 -1.1119 -0.0059 21 1 -0.3634 -0.0055 1.0276 22 1 -0.3633 -0.8873 -0.5186 23 1 -0.3633 0.8927 -0.5091 24 1 1.9250 2.1187 -0.0005 25 1 5.6846 -1.1613 -0.0056 26 1 5.2508 -3.5638 -0.0197 27 1 2.9452 -4.4178 -0.0257 28 1 0.6319 -4.0147 0.4103 29 1 0.0068 -2.3564 0.5753 30 1 0.1339 -2.0637 -1.8836 31 1 0.7590 -3.7220 -2.0488 32 1 -1.8691 -3.5008 -4.6192 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261236945.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:51 Heat of formation + Delta-G solvation = 59.398513 kcal Electronic energy + Delta-G solvation = -15528.550003 eV Core-core repulsion = 13068.294945 eV Total energy + Delta-G solvation = -2460.255058 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.77952 -37.21467 -34.94034 -33.15840 -31.63737 -29.20249 -28.88311 -26.56664 -24.85907 -22.64630 -21.81851 -21.21025 -19.25210 -16.84329 -16.58906 -16.25243 -15.41138 -15.26480 -14.54758 -14.29812 -13.37319 -13.13727 -13.06277 -12.89697 -12.39880 -11.91722 -11.59833 -11.34915 -11.29782 -10.96099 -10.87256 -10.67556 -10.07295 -9.96181 -9.64823 -9.45870 -9.14763 -8.45134 -7.97316 -7.48477 -6.09134 -4.14111 1.38015 1.94485 3.01551 3.15798 3.25810 3.31686 3.33241 4.27284 4.37923 4.57813 4.90545 5.11732 5.25836 5.36928 5.40243 5.48338 5.75631 5.78022 5.87640 6.02940 6.12571 6.22949 6.49140 6.59580 6.83111 6.89361 6.91966 7.04276 7.30296 7.47289 7.57208 7.67799 7.89958 8.18444 8.28416 8.93136 9.51066 11.01207 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.033585 B = 0.007149 C = 0.006359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.507019 B = 3915.696350 C = 4402.465903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.483 5.483 3 C 0.248 3.752 4 N -0.506 5.506 5 C 0.042 3.958 6 C -0.088 4.088 7 C -0.122 4.122 8 C -0.117 4.117 9 C -0.046 4.046 10 C -0.085 4.085 11 C 0.031 3.969 12 C -0.528 4.528 13 H 0.056 0.944 14 C 0.060 3.940 15 N -0.891 5.891 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.052 3.948 21 H 0.069 0.931 22 H 0.117 0.883 23 H 0.082 0.918 24 H 0.208 0.792 25 H 0.121 0.879 26 H 0.123 0.877 27 H 0.127 0.873 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.015 0.985 31 H 0.020 0.980 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.576 5.236 7.741 10.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.172 5.172 3 C -0.038 4.038 4 N -0.226 5.226 5 C -0.077 4.077 6 C -0.107 4.107 7 C -0.142 4.142 8 C -0.137 4.137 9 C -0.049 4.049 10 C -0.122 4.122 11 C -0.006 4.006 12 C -0.566 4.566 13 H 0.074 0.926 14 C -0.142 4.142 15 N -0.530 5.530 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.057 4.057 21 H 0.088 0.912 22 H 0.136 0.864 23 H 0.101 0.899 24 H 0.225 0.775 25 H 0.139 0.861 26 H 0.141 0.859 27 H 0.145 0.855 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.033 0.967 31 H 0.039 0.961 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.082 5.785 7.551 11.290 hybrid contribution -1.794 -0.730 -0.212 1.948 sum 4.288 5.055 7.339 9.890 Atomic orbital electron populations 1.22438 0.75652 1.06703 1.03373 1.45230 1.07561 1.05340 1.59105 1.25193 0.85454 0.93350 0.99787 1.70381 1.18270 1.11191 1.22790 1.19021 0.92319 0.90083 1.06249 1.19820 0.96806 0.91587 1.02528 1.20566 0.96775 0.94652 1.02189 1.20788 0.91400 0.99257 1.02213 1.19310 0.97702 0.88763 0.99124 1.20926 0.89527 0.99998 1.01747 1.19108 0.95596 0.97233 0.88697 1.21195 0.98740 1.43806 0.92874 0.92580 1.25026 0.98167 0.95401 0.95618 1.69961 1.37402 1.47835 0.97799 0.86662 0.84687 0.79643 0.77043 1.20221 1.21242 1.20150 1.18771 0.90721 0.89177 1.06999 0.91195 0.86449 0.89905 0.77545 0.86138 0.85924 0.85535 0.91687 0.92489 0.96686 0.96123 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.86 10.00 59.85 0.60 1.46 16 2 N -0.48 -8.03 3.21 -123.19 -0.39 -8.42 16 3 C 0.25 3.71 12.50 -89.78 -1.12 2.59 16 4 N -0.51 -9.03 11.27 -12.05 -0.14 -9.16 16 5 C 0.04 0.78 7.23 -84.70 -0.61 0.16 16 6 C -0.09 -1.44 10.05 -39.61 -0.40 -1.84 16 7 C -0.12 -1.86 9.96 -39.97 -0.40 -2.26 16 8 C -0.12 -1.99 9.67 -39.52 -0.38 -2.38 16 9 C -0.05 -0.89 5.14 -104.54 -0.54 -1.43 16 10 C -0.08 -1.71 4.59 -27.88 -0.13 -1.84 16 11 C 0.03 0.76 4.32 -27.88 -0.12 0.64 16 12 C -0.53 -14.19 9.11 -34.44 -0.31 -14.50 16 13 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 16 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 C 0.05 1.00 6.77 -83.99 -0.57 0.43 16 21 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 22 H 0.12 2.10 4.11 -51.93 -0.21 1.89 16 23 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.21 2.03 8.06 -52.49 -0.42 1.61 16 25 H 0.12 1.71 8.06 -52.48 -0.42 1.29 16 26 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 27 H 0.13 1.95 8.06 -52.49 -0.42 1.53 16 28 H 0.06 1.27 8.05 -51.93 -0.42 0.85 16 29 H 0.06 1.09 6.08 -51.93 -0.32 0.78 16 30 H 0.01 0.40 6.81 -51.93 -0.35 0.04 16 31 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 271.18 15.07 4.09 4.09 Total: -1.00 -31.86 271.18 -8.61 -40.47 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -3.80 Total: -0.05 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -4.08 Total: -17.41 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: 0.21 Total: -42.94 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.86 -8.61 -40.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261236945.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.867 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds